Korea University · Biochemistry, Genetics and Molecular Biology
Professor Jae-Jin Kim's research lab specializes in fungal ecology and environmental microbiology, focusing on the roles of wood-inhabiting and sapstain fungi in forest ecosystems and their interactions with insect vectors. The lab investigates fungal diversity, community dynamics, and functional contributions to nutrient cycling and pollutant degradation, particularly in disturbed environments such as oil-spill-affected coastal sediments and abandoned salterns. A key emphasis is placed on understanding microbial recovery and resilience in marine and terrestrial ecosystems using molecular and high-throughput sequencing techniques.
Figures are computed from collected data and may differ slightly.
The mountain pine beetle (MPB) is a major concern for lodgepole pine (Pinus contorta var. latifolia Engelm.) forests in British Columbia, Canada. MPB and the ophiostomatoid staining fungi for which they serve as vector have a close, mutualistic relationship. In this work, we determined which fungi colonized MPB-killed standing trees with green, red, and grey crowns and quantified how rapidly the fungi stained and reduced the moisture content of sapwood. Green trees were mainly colonized by Ophio
Polyporoid and corticioid fungi are among the most important wood-decay fungi. Not only do they contribute to nutrient cycling by decomposing wood debris, but they are also valuable sources for natural products. Polyporoid and corticioid wood-inhabiting fungi were investigated in Odaesan National Park. Fruit bodies were collected and identified based on morphological and molecular analyses using 28S and internal transcribed spacer regions of DNA sequences. As a result, a total of 149 species, 69
Two synonymous sapstain species, Ophiostoma montium and Ophiostoma ips, which are vectored by Dendroctonus ponderosae and various bark beetles, respectively, were differentiated into separate species using growth and molecular characteristics. Analysis of 32 isolates of the two species from different countries showed that O. ips was able to grow at 35 degrees C while O. montium was not. This growth-based differentiation was strongly supported by sequence data for the internal transcribed spacer
Over 10 years after the Hebei Spirit oil spill (HSOS), the concentrations of pollutants, such as TPH and PAHs, in spilled crude oil have recovered to background levels, but in some areas, the environment has not fully recovered. In particular, PAHs were more resistant to degradation, and their persistence could have deleterious impacts on the sediment ecosystem. This study aimed to evaluate the microbial recovery of coastal sediments from the HSOS by analyzing the structure and diversity of the
Intertidal flats, as transition zones where terrestrial and marine ecosystems meet, provide unique environments and play an important role in marine ecosystems. In particular, the environmental characteristics of tidal marshes show are different than those of bare flats, especially in the rhizosphere. However, unlike the rhizosphere in terrestrial ecosystems, the rhizosphere of plants in tidal marsh areas and the associated microbial community have been the focus of very little research. Thus, t
Intertidal zones are unique environments that are known to be ecological hot spots. In this study, sediments were collected from mudflats and decommissioned salterns on three islands in the Yellow Sea of South Korea. The diversity analysis targeted both isolates and unculturable fungi via Illumina sequencing, and the natural recovery of the abandoned salterns was assessed. The phylogeny and bioactivities of the fungal isolates were investigated. The community analysis showed that the abandoned s
The production of water-soluble pigments by fungal strains indigenous to South Korea was investigated to find those that are highly productive in submerged culture. Among 113 candidates, 34 strains that colored the inoculated potato dextrose agar medium were selected. They were cultured in potato dextrose broth and extracted with ethanol. The productivity, functionality (radical-scavenging activities), and color information (CIELAB values) of the pigment extracts were measured. Five species prod
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