Kyoto University · Environmental Science
Professor Takashi Yoshida's research lab specializes in aquatic virology, focusing on the ecology, genomics, and host interactions of cyanophages—viruses that infect cyanobacteria. The lab investigates the role of these phages in regulating harmful algal blooms, particularly those caused by toxic Microcystis aeruginosa, using a combination of virological, molecular, and environmental omics approaches. Key research directions include the isolation and characterization of novel freshwater cyanomyoviruses, understanding viral dynamics in natural aquatic systems, and exploring how phage-host interactions influence microbial community structure and toxin production. The lab also contributes to environmental viromics, linking viral activity to microbial function through metagenomic and metatranscriptomic analyses.
Figures are computed from collected data and may differ slightly.
We isolated a cyanophage (Ma-LMM01) that specifically infects a toxic strain of the bloom-forming cyanobacterium Microcystis aeruginosa. Transmission electron microscopy showed that the virion is composed of anisometric head and a tail complex consisting of a central tube and a contractile sheath with helical symmetry. The morphological features and the host specificity suggest that Ma-LMM01 is a member of the cyanomyovirus group. Using semi-one-step growth experiments, the latent period and bur
Cyanobacteria and their phages are significant microbial components of the freshwater and marine environments. We identified a lytic phage, Ma-LMM01, infecting Microcystis aeruginosa, a cyanobacterium that forms toxic blooms on the surfaces of freshwater lakes. Here, we describe the first sequenced freshwater cyanomyovirus genome of Ma-LMM01. The linear, circularly permuted, and terminally redundant genome has 162,109 bp and contains 184 predicted protein-coding genes and two tRNA genes. The gen
The abundance of potentially Microcystis aeruginosa-infectious cyanophages in freshwater was studied using g91 real-time PCR. A clear increase in cyanophage abundance was observed when M. aeruginosa numbers declined, showing that these factors were significantly negatively correlated. Furthermore, our data suggested that cyanophage dynamics may also affect shifts in microcystin-producing and non-microcystin-producing populations.
Viruses infecting microorganisms are ubiquitous and abundant in the ocean. However, it is unclear when and where the numerous viral particles we observe in the sea are produced and whether they are active. To address these questions, we performed time-series analyses of viral metagenomes and microbial metatranscriptomes collected over a period of 24 h at a Japanese coastal site. Through mapping the metatranscriptomic reads on three sets of viral genomes ((i) 878 contigs of Osaka Bay viromes (OBV
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