Kyushu University · Biochemistry, Genetics and Molecular Biology
Professor Tapas Chakraborty's research lab specializes in aquatic biotechnology, focusing on the molecular mechanisms underlying fish reproduction, stress resilience, and genetic regulation. The lab investigates sex determination pathways, oocyte physiology, and the application of advanced biotechnologies such as CRISPR/Cas9 and RNAi for sustainable aquaculture. It also develops biosensors for environmental monitoring and explores probiotic interventions to mitigate thermal stress in fish. The research integrates molecular biology, functional genomics, and environmental biotechnology to enhance fish health and aquaculture productivity.
Figures are computed from collected data and may differ slightly.
Probiotics play an important role in growth increment, immune enhancement and stress mitigation in fish. Increasing temperature is a major concern in present aquaculture practices as it markedly deteriorates the health condition and reduces the growth in fish. In order to explore the possibilities of using probiotics as a counter measure for temperature associated problems, a 30 days feeding trial was conducted to study the hemato-immunological and apoptosis response of Labeo rohita (8.3±0.4 g)
Abstract Despite identification of several sex-determining genes in non-mammalian vertebrates, their detailed molecular cascades of sex determination/differentiation are not known. Here, we used a novel RNAi to characterise the molecular mechanism of Dmy (the sex-determining gene of medaka)-mediated masculinity in XY fish. Dmy knockdown ( Dmy -KD) suppressed male pathway ( Gsdf, Sox9a2 , etc.) and favoured female cascade ( Rspo1 , etc.) in embryonic XY gonads, resulting in a fertile male-to-fema
Fisheries and aquaculture are the fastest-growing food-producing sector and rapidly becoming an important element for the global food security since they are the primary source of seafood and high animal protein in the human diet. Genome editing offers new possibilities such as the clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated protein (Cas9) technology, which has the potential to accelerate the sustainable genetic improvement in fisheries and aquaculture. The CRI
A bacterial biosensor is reported that responds to Pb 2+ in the range of 50-400 μM by expressing green fluorescence protein (GFP). The genetic element that senses Pb 2+ includes the regulatory protein gene (PbrR) along with operator/promoter (PbrO/P) of the lead resistance operon from plasmid pMOL30. PbrO/P also controls the gfp reporter gene expression. Escherichia coli DH5α is the host organism. GFP response to induction by Pb 2+ peaked at 250 pM. Decline in fluorescence beyond 250 μM was rela
Environmental stressors, gonadal degenerative diseases and tumour development can significantly alter the oocyte physiology, and species fertility and fitness. To expand the molecular understanding about oocyte degradation, we isolated several spliced variants of Japanese anchovy hatching enzymes (AcHEs; ovastacin homologue) 1 and 2, and analysed their potential in oocyte sustenance. Particularly, AcHE1b, an ovary-specific, steroid-regulated, methylation-dependent, stress-responsive isoform, was
In vertebrates, estrogen receptors are essential for estrogen-associated early gonadal sex development. Our previous studies revealed sexual dimorphic expression of estrogen receptor β2 (ERβ2) during embryogenesis of medaka, and here we investigated the functional importance of ERβ2 in female gonad development and maintenance using a transgenerational ERβ2-knockdown (ERβ2-KD) line and ERβ2-null mutants. We found that ERβ2 reduction favored male-biased gene transcription, suppressed female-respon
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