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Ara Ko

Pohang University of Science and Technology · Medicine

About the Lab

Professor Ara Ko's research lab focuses on the molecular mechanisms underlying age-related diseases, with a central emphasis on cellular signaling pathways such as mTOR and O-GlcNAc modification. The lab investigates how metabolic regulators—including enzymes like GAPDH and OGT/OGA—integrate nutrient signals to control cell growth, autophagy, and proteostasis. Key research directions include the role of natural compounds like resveratrol in modulating these pathways, the impact of gut microbiota metabolites on neurodegeneration, and the regulation of insulin signaling in muscle atrophy. The lab integrates molecular biology, metabolism, and translational models to uncover therapeutic targets for aging-related disorders such as cancer, diabetes, and Parkinson’s disease.

mTOR signalingO-GlcNAc modificationgut microbiomeautophagymetabolic regulation

Research Overview

Papers
70
Total Citations
9,176
Papers (5y)
18
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
18total
2022
2023
2024
2025
2026
Citations per year (5y)
94total
20222023202420252026

Selected Papers

15
1
Review|6,660 citations·2016
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
Ara Koh, Filipe De Vadder, Petia Kovatcheva‐Datchary, Fredrik Bäckhed
SJR Q1CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|820 citations·2018
Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1
Ara Koh, Antonio Molinaro, Marcus Ståhlman, Muhammad Tanweer Khan, Caroline Schmidt, Louise Mannerås-Holm, Hao Wu, Alba Carreras, Heeyoon Jeong, Louise E. Olofsson, Per-Olof Bergh, Victor E. A. Gerdes
SJR Q1CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Review|320 citations·2020
From Association to Causality: the Role of the Gut Microbiota and Its Functional Products on Host Metabolism
Ara Koh, Fredrik Bäckhed
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|279 citations·2016
Resveratrol induces autophagy by directly inhibiting mTOR through ATP competition
Dohyun Park, Heeyoon Jeong, Mi Nam Lee, Ara Koh, Ohman Kwon, Yong Ryoul Yang, Jungeun Noh, Pann‐Ghill Suh, Hwangseo Park, Sung Ho Ryu
SJR Q1Scientific ReportsOA

Resveratrol (RSV) is a natural polyphenol that has a beneficial effect on health, and resveratrol-induced autophagy has been suggested to be a key process in mediating many beneficial effects of resveratrol, such as reduction of inflammation and induction of cancer cell death. Although various resveratrol targets have been suggested, the molecule that mediates resveratrol-induced autophagy remains unknown. Here, we demonstrate that resveratrol induces autophagy by directly inhibiting the mTOR-UL

EpidemiologyMedicine
5
Article|230 citations·2012
O‐GlcNAcase is essential for embryonic development and maintenance of genomic stability
Yong Ryoul Yang, Minseok Song, Ho Lee, Yoon Jeon, Eun‐Jeong Choi, Hyun‐Jun Jang, Hyo Youl Moon, Hayoung Byun, Eung‐Kyun Kim, Dae Hyun Kim, Mi Nam Lee, Ara Koh
SJR Q1Aging Cell

Dysregulation of O-GlcNAc modification catalyzed by O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA) contributes to the etiology of chronic diseases of aging, including cancer, cardiovascular disease, type 2 diabetes, and Alzheimer's disease. Here we found that natural aging in wild-type mice was marked by a decrease in OGA and OGT protein levels and an increase in O-GlcNAcylation in various tissues. Genetic disruption of OGA resulted in constitutively elevated O-GlcNAcylation in embryos and led

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|183 citations·2009
Glycolytic Flux Signals to mTOR through Glyceraldehyde-3-Phosphate Dehydrogenase-Mediated Regulation of Rheb
Mi Nam Lee, Sang Hoon Ha, Jaeyoon Kim, Ara Koh, Chang Sup Lee, Jung Hwan Kim, Hyeona Jeon, Do‐Hyung Kim, Pann‐Ghill Suh, Sung Ho Ryu
SJR Q2Molecular and Cellular BiologyOA

The mammalian target of rapamycin (mTOR) interacts with raptor to form the protein complex mTORC1 (mTOR complex 1), which plays a central role in the regulation of cell growth in response to environmental cues. Given that glucose is a primary fuel source and a biosynthetic precursor, how mTORC1 signaling is coordinated with glucose metabolism has been an important question. Here, we found that the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH) binds Rheb and inhibits mTORC1 s

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|153 citations·2020
Microbial Imidazole Propionate Affects Responses to Metformin through p38γ-Dependent Inhibitory AMPK Phosphorylation
Ara Koh, Louise Mannerås-Holm, Na-Oh Yunn, Peter M. Nilsson, Sung Ho Ryu, Antonio Molinaro, Rosie Perkins, J. G. Smith, Fredrik Bäckhed
SJR Q1Cell MetabolismOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|38 citations·2013
C1-Ten Is a Protein Tyrosine Phosphatase of Insulin Receptor Substrate 1 (IRS-1), Regulating IRS-1 Stability and Muscle Atrophy
Ara Koh, Mi Nam Lee, Yong Ryoul Yang, Heeyoon Jeong, Jaewang Ghim, 노정은, Jaeyoon Kim, Dongryeol Ryu, Sehoon Park, Parkyong Song, Seung‐Hoi Koo, Nicholas R. Leslie
SJR Q2Molecular and Cellular BiologyOA

Muscle atrophy occurs under various catabolic conditions, including insulin deficiency, insulin resistance, or increased levels of glucocorticoids. This results from reduced levels of insulin receptor substrate 1 (IRS-1), leading to decreased phosphatidylinositol 3-kinase activity and thereby activation of FoxO transcription factors. However, the precise mechanism of reduced IRS-1 under a catabolic condition is unknown. Here, we report that C1-Ten is a novel protein tyrosine phosphatase (PTPase)

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|14 citations·2012
Single-port Laparoscopic Appendectomy During Pregnancy
Ara Koh, Jung Hun Lee, Joong Sub Choi, Jeong Min Eom, Jin Hwa Hong
SJR Q2Surgical Laparoscopy Endoscopy & Percutaneous Techniques

As a result of the increased demand for minimally invasive surgery, single-port laparoscopic surgery performed via a single incision was introduced and has been performed in various fields. Herein, we report our initial experience with single-port laparoscopic appendectomy (SP-LA) using Gelport access for the treatment of acute appendicitis in 2 pregnant women. SP-LA using Gelport access was performed successfully in these pregnant women without prolongation of operation time, and there was no n

SurgeryMedicine
10
Article|14 citations·2025
Gut microbial production of imidazole propionate drives Parkinson’s pathologies
Hyunji Park, Jiwon Cheon, Hyojung Kim, Jihye Kim, Jihyun Kim, Jeong‐Yong Shin, Hyojin Kim, Gaeun Ryu, In Young Chung, Ji Hun Kim, Doeun Kim, Zhidong Zhang
SJR Q1Nature CommunicationsOA

Parkinson’s disease (PD) is characterized by the selective degeneration of midbrain dopaminergic neurons and aggregation of α-synuclein. Emerging evidence implicates the gut microbiome in PD, with microbial metabolites proposed as potential pathological mediators. However, the specific microbes and metabolites involved, and whether gut-derived metabolites can reach the brain to directly induce neurodegeneration, remain unclear. Here we show that elevated levels of Streptococcus mutans (S. mutans

NeurologyMedicine
11
Article|13 citations·2024
The Microbiome Matters: Its Impact on Cancer Development and Therapeutic Responses
In-Young Chung, Ji Hyun Kim, Ara Koh
SJR Q2The Journal of Microbiology

In the evolving landscape of cancer research, the human microbiome emerges as a pivotal determinant reshaping our understanding of tumorigenesis and therapeutic responses. Advanced sequencing technologies have uncovered a vibrant microbial community not confined to the gut but thriving within tumor tissues. Comprising bacteria, viruses, and fungi, this diverse microbiota displays distinct signatures across various cancers, with most research primarily focusing on bacteria. The correlations betwe

Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Review|12 citations·2023
Scarring the early-life microbiome: its potential life-long effects on human health and diseases
Hyunji Park, N. Park, Ara Koh
SJR Q1BMB ReportsOA

The gut microbiome is widely recognized as a dynamic organ with a profound influence on human physiology and pathology. Extensive epidemiological and longitudinal cohort studies have provided compelling evidence that disruptions in the early-life microbiome can have long-lasting health implications. Various factors before, during, and after birth contribute to shaping the composition and function of the neonatal and infant microbiome. While these alterations can be partially restored over time,

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|7 citations·2018
Quantitative Modeling Analysis Demonstrates the Impact of CYP2C19 and CYP2D6 Genetic Polymorphisms on the Pharmacokinetics of Amitriptyline and Its Metabolite, Nortriptyline
Ara Koh, Kwan Cheol Pak, Hee Youn Choi, Sunae Ryu, Seung-Eun Choi, Ki Soon Kim, Kyun‐Seop Bae, Hyeong‐Seok Lim
SJR Q2The Journal of Clinical Pharmacology

Amitriptyline is a tricyclic antidepressant that is metabolized mainly by CYP2C19 and CYP2D6 enzymes. Higher plasma levels of amitriptyline and its active metabolite, nortriptyline, are associated with an increased risk of adverse events including anticholinergic effects. The aim of this study was to evaluate the effects of CYP2C19 and CYP2D6 genetic polymorphisms on amitriptyline and nortriptyline pharmacokinetics. Twenty-four Korean healthy adult male volunteers were enrolled in the study afte

PharmacologyPharmacology, Toxicology and Pharmaceutics
14
Article|6 citations·2014
Regulation of C1-Ten protein tyrosine phosphatase by p62/SQSTM1-mediated sequestration and degradation
Ara Koh, Dohyun Park, Heeyoon Jeong, Jiyoun Lee, Mi Nam Lee, Pann‐Ghill Suh, Sung Ho Ryu
SJR Q2Cellular Signalling
Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|5 citations·2025
Enrichment of gut-derived metabolites in a Parkinson’s disease subtype with REM sleep behavior disorder
Sunjae Lee, Ji‐Hyun Kim, Jae Woo Baek, Ki-Young Jung, Yunjong Lee, Ara Koh, Han‐Joon Kim
SJR Q1npj Parkinson s DiseaseOA

Recent reports indicate that Parkinson's disease (PD)-like changes in gut microbial signatures develop in idiopathic REM sleep behavior disorder (iRBD), a prodrome of α-synucleinopathies. However, <50% of PD cases exhibit RBD at onset, underscoring PD's heterogeneity. Using untargeted metabolomics, plasma samples from PD patients with and without RBD, iRBD subjects, and healthy controls were analyzed to characterize the metabolic differences in PD patients with and without RBD. Metabolomic analy

NeurologyMedicine

Research Areas

Molecular BiologyObstetrics and GynecologyReproductive MedicineEpidemiologyNeurologyPhysiology

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