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Chung Sub Kim

Sungkyunkwan University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Chung Sub Kim's research lab specializes in natural product chemistry, focusing on the isolation, structural elucidation, and biological evaluation of bioactive compounds from medicinal plants and microorganisms. The lab employs advanced spectroscopic techniques, including NMR and HRMS, alongside chemical and computational methods to determine complex structures, particularly of novel terpenoids, lignans, and bacterial metabolites. A key research direction involves linking natural compounds to neuroprotective, anti-inflammatory, and anticancer activities, with a strong emphasis on molecular mechanisms and signaling pathways.

natural productsstructural elucidationneuroprotectionanti-inflammatorybiosynthesis

Research Overview

Papers
148
Total Citations
2,513
Papers (5y)
44
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
44total
2022
2023
2024
2025
2026
Citations per year (5y)
262total
20222023202420252026

Selected Papers

15
1
Article|266 citations·2019
Structure elucidation of colibactin and its DNA cross-links
Mengzhao Xue, Chung Sub Kim, Alan R. Healy, Kevin M. Wernke, Zhixun Wang, Madeline C. Frischling, Emilee E. Shine, Weiwei Wang, Seth B. Herzon, Jason M. Crawford
SJR Q1Science

strains. The presence of colibactin-producing bacteria correlates with the frequency and severity of colorectal cancer in humans. However, because colibactin has not been isolated or structurally characterized, studying the physiological effects of colibactin-producing bacteria in the human gut has been difficult. We used a combination of genetics, isotope labeling, tandem mass spectrometry, and chemical synthesis to deduce the structure of colibactin. Our structural assignment accounts for all

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|140 citations·2020
Characterization of Autoinducer-3 Structure and Biosynthesis in E. coli
Chung Sub Kim, Alexandra Gatsios, Santiago Cuesta, Yick Chong Lam, Zheng Wei, Haiwei Chen, Regan M. Russell, Emilee E. Shine, Rurun Wang, Thomas P. Wyche, Grazia Piizzi, Richard A. Flavell
SJR Q1ACS Central ScienceOA

(EHEC). We demonstrate that novel AI-3 analogs are derived from threonine dehydrogenase (Tdh) products and "abortive" tRNA synthetase reactions, and they are distributed across a variety of Gram-negative and Gram-positive bacterial pathogens. In addition to regulating virulence genes in EHEC, we show that the metabolites exert diverse immunological effects on primary human tissues. The discovery of AI-3 metabolites and their biochemical origins now provides a molecular foundation for investigati

EndocrinologyBiochemistry, Genetics and Molecular Biology
3
Article|58 citations·2015
Salicin derivatives from Salix glandulosa and their biological activities
Chung Sub Kim, Lalita Subedi, Kyoung-Jin Park, Sun Yeou Kim, Sang Un Choi, Ki Hyun Kim, Kang Ro Lee
SJR Q2Fitoterapia
Plant ScienceAgricultural and Biological Sciences
4
Article|51 citations·2017
Anti-Neurodegenerative Biflavonoid Glycosides from Impatiens balsamina
Chung Sub Kim, Munhyung Bae, Joonseok Oh, Lalita Subedi, Won Se Suh, Sang Zin Choi, Mi Won Son, Sun Yeou Kim, Sang Un Choi, Dong‐Chan Oh, Kang Ro Lee
SJR Q1Journal of Natural Products

Four biflavonoid glycosides, balsamisides A–D ( 1 – 4 ), and nine known compounds ( 5 – 13 ) were obtained from the white petals of Impatiens balsamina . The 2D structures of the purified phytochemicals were established using conventional NMR techniques in addition to the new long-range HSQMBC NMR experiment. Acid hydrolysis followed by experimental and quantum-mechanics-based ECD data analysis permitted full configurational assignment of the purified metabolites. Compounds 1 – 13 were assessed

Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|46 citations·2016
Diterpenes from the Trunk of Abies holophylla and Their Potential Neuroprotective and Anti-inflammatory Activities
Chung Sub Kim, Lalita Subedi, Sun Yeou Kim, Sang Un Choi, Ki Hyun Kim, Kang Ro Lee
SJR Q1Journal of Natural Products

Eleven new abietane-type diterpenes, holophyllins D-N (1-11), and 17 known analogues (12-28), were isolated from a MeOH extract of the trunk of Abies holophylla. The chemical structures of 1-11 were determined through spectroscopic data analysis, including NMR ((1)H and (13)C NMR, DEPT, (1)H-(1)H COSY, HMQC, HMBC, and NOESY) and HRFABMS methods. All isolated compounds (1-28) were evaluated for their cytotoxicity against four human tumor cell lines (A549, SK-OV-3, SK-MEL-2, and HCT-116), for thei

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|44 citations·2017
Bioactive Triterpenoids from the Twigs of Chaenomeles sinensis
Chung Sub Kim, Lalita Subedi, Joonseok Oh, Sun Yeou Kim, Sang Un Choi, Kang Ro Lee
SJR Q1Journal of Natural Products

Chaenomeles sinensis has been consumed traditionally for the treatment of throat diseases, diarrhea, inflammatory diseases, and dry beriberi. Repeated chromatography of the CHCl 3 -soluble fraction from the 80% MeOH extract of C. sinensis twigs led to the isolation of three new triterpenoids, sinenic acid A ( 1 ), 3β- O - cis -feruloyl-2α,19α-dihydroxyurs-12-en-28-oic acid ( 2 ), and 3β- O - cis -caffeoylbetulin ( 3 ), together with 20 analogues. The chemical structures of 1 – 3 were determined

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|41 citations·2013
Bioactive Lignans from the Trunk of Abies holophylla
Chung Sub Kim, Oh Wook Kwon, Sun Yeou Kim, Kang Ro Lee
SJR Q1Journal of Natural Products

Six new lignans (1-6) were isolated from the trunk of Abies holophylla MAXIM, together with 11 known lignans (7-17). The structures of 1-7 were elucidated by spectroscopic methods, acid hydrolysis, and use of the modified Mosher's method. The effects of the isolates on nerve growth factor induction in a C6 rat glioma cell line were evaluated. Compounds 6, 7, and 13 showed significant induction of nerve growth factor secretion at concentrations of 10 μM. Compounds 1, 5, 6, and 16 showed moderate

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|38 citations·2015
Lignan Glycosides from the Twigs of Chaenomeles sinensis and Their Biological Activities
Chung Sub Kim, Lalita Subedi, Sun Yeou Kim, Sang Un Choi, Ki Hyun Kim, Kang Ro Lee
SJR Q1Journal of Natural Products

Phytochemical investigation of the twigs of Chaenomeles sinensis led to the isolation and identification of six new lignan glycosides, chaenomiside A-F (1-6), along with five known ones (7-11). Their chemical structures were determined by spectroscopic methods, including NMR, MS, ECD, and GC/MS analyses. All the isolated compounds (1-11) were tested for their inhibitory effects on nitric oxide (NO) production in lipopolysaccharide-activated murine microglial cells and the secretion of nerve grow

Plant ScienceAgricultural and Biological Sciences
9
Article|38 citations·2013
Chemical constituents from the roots of Cynanchum paniculatum and their cytotoxic activity
Chung Sub Kim, Ju Yeoun Oh, Sang Un Choi, Kang Ro Lee
SJR Q3Carbohydrate Research
BiomaterialsMaterials Science
10
Article|28 citations·2018
Structural Characterization of Terpenoids from Abies holophylla Using Computational and Statistical Methods and Their Biological Activities
Chung Sub Kim, Joonseok Oh, Lalita Subedi, Sun Yeou Kim, Sang Un Choi, Kang Ro Lee
SJR Q1Journal of Natural Products

Three new diterpenoids (1-3) and three new triterpenoids (4-6) were isolated from the trunk of Abies holophylla together with 19 known terpenoids. The chemical structures of 1-6 were determined through NMR and MS data analyses. Also, the structural assignments of some of these compounds were verified and elucidated utilizing computational methods coupled with a statistical procedure (CP3, DP4, and DP4+). All the isolated compounds were evaluated for their cytotoxicity against four human cancer c

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|28 citations·2014
Five New Oxylipins from Chaenomeles sinensis
Chung Sub Kim, Oh Wook Kwon, Sun Yeou Kim, Sang Un Choi, Ki Hyun Kim, Kang Ro Lee
SJR Q2Lipids

In the course of our continuing search for bioactive constituents of Korean medicinal plants, we isolated five new oxylipins, chaenomic acid A-E (1-5), and six known ones (6-11) from the twigs of Chaenomeles sinensis. The structures of the new compounds (1-5) were determined by spectroscopic methods, including 1D and 2D NMR ((1)H and (13)C NMR, (1)H-(1)H COSY, HMQC, HMBC, and NOESY), olefin cross-metathesis, and LC/MS analysis. The known compounds (6-11) were identified by comparison of their sp

Organic ChemistryChemistry
12
Article|27 citations·2014
Phenolic Glycosides from the Twigs of Salix glandulosa
Chung Sub Kim, Oh Wook Kwon, Sun Yeou Kim, Sang Un Choi, Jae Yoon Kim, Ji‐Young Han, Soo Im Choi, Jong Gil Choi, Ki Hyun Kim, Kang Ro Lee
SJR Q1Journal of Natural Products

As a part of an ongoing search for bioactive constituents from Korean medicinal plants, the phytochemical investigations of the twigs of Salix glandulosa afforded 12 new phenolic glycosides (1-12) and a known analogue (13). The structures of 1-13 were characterized by a combination of NMR methods ((1)H and (13)C NMR, (1)H-(1)H COSY, HMQC, and HMBC), chemical hydrolysis, and GC/MS. The absolute configuration of 13 [(1R,2S)-2-hydroxycyclohexyl-2'-O-trans-p-coumaroyl-β-d-glucopyranoside] was determ

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|26 citations·2023
Enhanced Expression of p53 and Suppression of PI3K/Akt/mTOR by Three Red Sea Algal Extracts: Insights on Their Composition by LC-MS-Based Metabolic Profiling and Molecular Networking
Nouran M. Fahmy, Mariam I. Gamal El‐Din, Maha M. Salem, Sarah H. Rashedy, Gyu Sung Lee, Yoon Seo Jang, Ki Hyun Kim, Chung Sub Kim, Mohamed El‐Shazly, Shaimaa Fayez
SJR Q1Marine DrugsOA

Brown algae comprise up to 2000 species with wide dissemination in temperate zones. A comprehensive untargeted metabolic profiling guided by molecular networking of three uninvestigated Red-Sea-derived brown algae, namely Sirophysalis trinodis, Polycladia myrica, and Turbinaria triquetra, led to the identification of over 115 metabolites categorized as glycerolipids, fatty acids, sterol lipids, sphingolipids, and phospholipids. The three algae exhibited low-to-moderate antioxidant capacity using

Renewable Energy, Sustainability and the EnvironmentEnergy
14
Article|26 citations·2012
Three New Diterpenoids from the Leaves ofThuja orientalis
Chung Sub Kim, Sang Choi, Kang Nyeong Lee
SJR Q2Planta Medica

Three new diterpenoids, 18-formyloxy-8 β-hydroxysandaracopimar-15-ene (1), 15(R)-N-butoxypinusolidic acid (2), and 15,16-dihydro-15,16-dimethoxylambertianic acid (3), along with twelve known compounds (4-15) were isolated from MeOH extracts of leaves of Thuja orientalis L. The structures of the three new compounds were elucidated on the basis of spectroscopic analyses, including extensive 2D-NMR data. The absolute stereochemistry of compound 2 was clarified by a CD spectroscopic study. The isola

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|26 citations·2015
Two new phenolic compounds from the white flower of Impatiens balsamina
Chung Sub Kim, Lalita Subedi, Sun Yeou Kim, Sang Un Choi, Sang Zin Choi, Mi Won Son, Ki Hyun Kim, Kang Ro Lee
SJR Q3Phytochemistry Letters
ToxicologyPharmacology, Toxicology and Pharmaceutics

Research Areas

Molecular BiologyPharmacologyPlant ScienceBiotechnologyEndocrinologyMicrobiology

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