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Jae Cheol Lee

Sungkyunkwan University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Jae Cheol Lee's research lab specializes in cardiovascular and neurovascular disease modeling using human induced pluripotent stem cells (iPSCs). The lab focuses on understanding cellular and molecular mechanisms underlying cardiomyopathy, drug-induced cardiotoxicity, and neurotropism of viral infections such as SARS-CoV-2 through advanced single-cell genomics and stem cell technologies. Key research directions include improving iPSC differentiation protocols, characterizing cellular heterogeneity, and applying genome editing tools like TALENs for disease modeling. The lab also investigates the pathophysiological responses of human-derived cardiomyocytes and endothelial cells to therapeutic agents and viral pathogens.

iPSC-derived cardiomyocytessingle-cell RNA-seqcardiotoxicitydisease modelinggenome editing

Research Overview

Papers
67
Total Citations
2,013
Papers (5y)
26
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
26total
2021
2022
2023
2024
2025
Citations per year (5y)
134total
20212022202320242025

Selected Papers

15
1
Article|226 citations·2018
Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis
Jared M. Churko, Priyanka Garg, Barbara Treutlein, Meenakshi Venkatasubramanian, Haodi Wu, Jaecheol Lee, Quinton N. Wessells, Shih-Yu Chen, Wen-Yi Chen, Kashish Chetal, Gary L. Mantalas, Norma Neff
SJR Q1Nature CommunicationsOA

Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) have become a powerful tool for human disease modeling and therapeutic testing. However, their use remains limited by their immaturity and heterogeneity. To characterize the source of this heterogeneity, we applied complementary single-cell RNA-seq and bulk RNA-seq technologies over time during hiPSC cardiac differentiation and in the adult heart. Using integrated transcriptomic and splicing analysis, more than half a dozen d

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|219 citations·2019
Activation of PDGF pathway links LMNA mutation to dilated cardiomyopathy
Jaecheol Lee, Vittavat Termglinchan, Sebastian Diecke, Ilanit Itzhaki, Chi Keung Lam, Priyanka Garg, Edward Lau, Matthew Greenhaw, Timon Seeger, Haodi Wu, Joe Z. Zhang, Xingqi Chen
SJR Q1Nature
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|198 citations·2019
Human-Induced Pluripotent Stem Cell Model of Trastuzumab-Induced Cardiac Dysfunction in Patients With Breast Cancer
Tomoya Kitani, Sang‐Ging Ong, Chi Keung Lam, June‐Wha Rhee, Joe Z. Zhang, Angelos Oikonomopoulos, Nan Ma, Lei Tian, Jaecheol Lee, Melinda L. Telli, Ronald Witteles, Arun Sharma
SJR Q1CirculationOA

BACKGROUND: Molecular targeted chemotherapies have been shown to significantly improve the outcomes of patients who have cancer, but they often cause cardiovascular side effects that limit their use and impair patients' quality of life. Cardiac dysfunction induced by these therapies, especially trastuzumab, shows a distinct cardiotoxic clinical phenotype in comparison to the cardiotoxicity induced by conventional chemotherapies. METHODS: We used the human induced pluripotent stem cell-derived ca

Cardiology and Cardiovascular MedicineMedicine
4
Article|174 citations·2015
Epigenetic Regulation of Phosphodiesterases 2A and 3A Underlies Compromised β-Adrenergic Signaling in an iPSC Model of Dilated Cardiomyopathy
Haodi Wu, Jaecheol Lee, Ludovic G. Vincent, Qingtong Wang, Mingxia Gu, Feng Lan, Jared M. Churko, Karim Sallam, Elena Matsa, Arun Sharma, Joseph Gold, Adam J. Engler
SJR Q1Cell stem cell
Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|148 citations·2018
Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial Cells
David T. Paik, Lei Tian, Jaecheol Lee, Nazish Sayed, Ian Y. Chen, Siyeon Rhee, June‐Wha Rhee, Youngkyun Kim, Robert Wirka, Jan W. Buikema, Sean M. Wu, Kristy Red‐Horse
SJR Q1Circulation ResearchOA

RATIONALE: Human-induced pluripotent stem cell-derived endothelial cells (iPSC-ECs) have risen as a useful tool in cardiovascular research, offering a wide gamut of translational and clinical applications. However, inefficiency of the currently available iPSC-EC differentiation protocol and underlying heterogeneity of derived iPSC-ECs remain as major limitations of iPSC-EC technology. OBJECTIVE: Here, we performed droplet-based single-cell RNA sequencing (scRNA-seq) of the human iPSCs after iPSC

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|88 citations·2016
S6K1 Phosphorylation of H2B Mediates EZH2 Trimethylation of H3: A Determinant of Early Adipogenesis
Sang Ah Yi, Sung Hee Um, Jaecheol Lee, Ji Hee Yoo, So‐Young Bang, Eunkyung Park, Min Gyu Lee, Ki Hong Nam, Ye Ji Jeon, Jong Woo Park, Jueng Soo You, Sang-Jin Lee
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Review|68 citations·2017
A Comprehensive TALEN-Based Knockout Library for Generating Human-Induced Pluripotent Stem Cell–Based Models for Cardiovascular Diseases
Ioannis Karakikes, Vittavat Termglinchan, Diana A. Cepeda, Jaecheol Lee, Sebastian Diecke, Ayal Hendel, Ilanit Itzhaki, Mohamed Ameen, Rajani Shrestha, Haodi Wu, Ning Ma, Ning‐Yi Shao
SJR Q1Circulation ResearchOA

Rationale: Targeted genetic engineering using programmable nucleases such as transcription activator–like effector nucleases (TALENs) is a valuable tool for precise, site-specific genetic modification in the human genome. Objective: The emergence of novel technologies such as human induced pluripotent stem cells (iPSCs) and nuclease-mediated genome editing represent a unique opportunity for studying cardiovascular diseases in vitro. Methods and Results: By incorporating extensive literature and

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|62 citations·2020
Infection of Brain Organoids and 2D Cortical Neurons with SARS-CoV-2 Pseudovirus
Sang Ah Yi, Ki Hong Nam, Jihye Yun, Dongmin Gim, Daeho Joe, Yong Ho Kim, Hanjoo Kim, Jeung‐Whan Han, Jaecheol Lee
SJR Q1VirusesOA

Since the global outbreak of SARS-CoV-2 (COVID-19), infections of diverse human organs along with multiple symptoms continue to be reported. However, the susceptibility of the brain to SARS-CoV-2, and the mechanisms underlying neurological infection are still elusive. Here, we utilized human embryonic stem cell-derived brain organoids and monolayer cortical neurons to investigate infection of brain with pseudotyped SARS-CoV-2 viral particles. Spike-containing SARS-CoV-2 pseudovirus infected neur

NeurologyMedicine
9
Article|62 citations·2015
Novel codon-optimized mini-intronic plasmid for efficient, inexpensive and xeno-free induction of pluripotency
Sebastian Diecke, Jiamiao Lu, Jaecheol Lee, Vittavat Termglinchan, Nigel G. Kooreman, Paul W. Burridge, Antje Ebert, Jared M. Churko, Arun Sharma, Mark A. Kay, Joseph C. Wu
SJR Q1Scientific ReportsOA

The development of human induced pluripotent stem cell (iPSC) technology has revolutionized the regenerative medicine field. This technology provides a powerful tool for disease modeling and drug screening approaches. To circumvent the risk of random integration into the host genome caused by retroviruses, non-integrating reprogramming methods have been developed. However, these techniques are relatively inefficient or expensive. The mini-intronic plasmid (MIP) is an alternative, robust transgen

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|54 citations·2020
Anti-adipogenic Pregnane Steroid from a Hydractinia-associated Fungus, Cladosporium sphaerospermum SW67
Seoung-Rak Lee, Heesun Kang, Min-Jeong Yoo, Sang-Ah Yi, Christine Beemelmanns, Jaecheol Lee, Ki Hyun Kim
SJR Q4Natural Product SciencesOA

A pregnane steroid, 3α-hydroxy-pregn-7-ene-6,20-dione (1), was isolated from a Hydractinia-associated Cladosporium sphaerospermum SW67 by repetitive column chromatographic separation and high-performance liquid chromatography (HPLC) purification. The planar structure of 1 was elucidated from the analysis of the spectroscopic data (1D and 2D NMR spectra) and LC-MS data. The absolute configuration of 1 was determined by interpretation of ROESY spectrum of 1, together with the comparison of reporte

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|54 citations·2014
Generation of disease-specific induced pluripotent stem cells from patients with rheumatoid arthritis and osteoarthritis
Jaecheol Lee, Youngkyun Kim, Hyoju Yi, Sebastian Diecke, Juryun Kim, Hyerin Jung, Yeri Alice Rim, Seung Min Jung, Myungshin Kim, Yong Goo Kim, Sung‐Hwan Park, Ho‐Youn Kim
SJR Q1Arthritis Research & TherapyOA

INTRODUCTION: Since the concept of reprogramming mature somatic cells to generate induced pluripotent stem cells (iPSCs) was demonstrated in 2006, iPSCs have become a potential substitute for embryonic stem cells (ESCs) given their pluripotency and "stemness" characteristics, which resemble those of ESCs. We investigated to reprogram fibroblast-like synoviocytes (FLSs) from patients with rheumatoid arthritis (RA) and osteoarthritis (OA) to generate iPSCs using a 4-in-1 lentiviral vector system.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|49 citations·2020
Ginsenoside Rg3 Induces Browning of 3T3-L1 Adipocytes by Activating AMPK Signaling
Kyung‐Tae Kim, Ki Hong Nam, Sang Ah Yi, Jong Woo Park, Jeung‐Whan Han, Jaecheol Lee
SJR Q1NutrientsOA

Ginsenoside Rg3, one of the major components in Panax ginseng, has been reported to possess several therapeutic effects including anti-obesity properties. However, its effect on the browning of mature white adipocytes as well as the underlying mechanism remains poorly understood. In this study, we suggested a novel role of Rg3 in the browning of mature 3T3-L1 adipocytes by upregulating browning-related gene expression. The browning effects of Rg3 on differentiated 3T3-L1 adipocytes were evaluate

PhysiologyMedicine
13
Article|47 citations·2018
SETD7 Drives Cardiac Lineage Commitment through Stage-Specific Transcriptional Activation
Jaecheol Lee, Ning‐Yi Shao, David T. Paik, Haodi Wu, Hongchao Guo, Vittavat Termglinchan, Jared M. Churko, Youngkyun Kim, Tomoya Kitani, Ming-Tao Zhao, Yue Zhang, Kitchener D. Wilson
SJR Q1Cell stem cellOA
GeneticsBiochemistry, Genetics and Molecular Biology
14
Article|27 citations·2019
Anti-adipogenic Effect of β-Carboline Alkaloids from Garlic (Allium sativum)
Su Cheol Baek, Ki Hong Nam, Sang Ah Yi, Mun Seok Jo, Kwang Ho Lee, Yong Hoon Lee, Jaecheol Lee, Ki Hyun Kim
SJR Q1FoodsOA

Garlic (Allium sativum L.) is utilized worldwide for culinary and medicinal use and has diverse health benefits. As part of our ongoing research to identify bioactive components from natural resources, phytochemical analysis of the methanolic extract of garlic led to the isolation and characterization of six compounds: Three eugenol diglycosides (1–3) and three β-carboline alkaloids (4–6). In particular, the absolute configurations of β-carboline alkaloids (5 and 6) were established by gauge-inc

Plant ScienceAgricultural and Biological Sciences
15
Article|17 citations·2022
S6K1 controls adiponectin expression by inducing a transcriptional switch: BMAL1-to-EZH2
Sang Ah Yi, Ye Ji Jeon, Min Gyu Lee, Ki Hong Nam, So-Ra Ann, Jaecheol Lee, Jeung‐Whan Han
SJR Q1Experimental & Molecular MedicineOA

Adiponectin (encoded by Adipoq), a fat-derived hormone, alleviates risk factors associated with metabolic disorders. Although many transcription factors are known to control adiponectin expression, the mechanism underlying its fluctuation with regard to metabolic status remains unclear. Here, we show that ribosomal protein S6 kinase 1 (S6K1) controls adiponectin expression by inducing a transcriptional switch between two transcriptional machineries, BMAL1 and EZH2. Active S6K1 induced a suppress

PhysiologyMedicine

Research Areas

Molecular BiologyPlant ScienceCardiology and Cardiovascular MedicineNeurologyPhysiologyGenetics

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