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Jin-ha Yoo

Ewha Womans University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Jin-ha Yoo's research lab specializes in medicinal chemistry and chemical biology, with a primary focus on the design and synthesis of novel nucleoside and nucleotide analogues for targeting adenosine receptors and other G protein-coupled receptors (GPCRs). The lab integrates computational methods such as molecular docking and molecular dynamics simulations with synthetic organic chemistry to explore structure-activity relationships and develop potent, selective ligands—particularly for the A3 adenosine receptor. A key innovation involves the strategic incorporation of selenium at the 4′-position of nucleosides to modulate conformation, metabolic stability, and receptor affinity, leading to the development of bioisosteric analogues with enhanced pharmacological profiles. The lab also investigates the biological implications of these compounds in metabolic and inflammatory diseases, including insulin sensitivity and adiponectin regulation.

adenosine receptor4'-selenonucleosidesstructure-activity relationshipGPCR ligandscomputational drug design

Research Overview

Papers
107
Total Citations
2,631
Papers (5y)
34
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
34total
2021
2022
2023
2024
2025
Citations per year (5y)
159total
20212022202320242025

Selected Papers

15
1
Article|44 citations·2018
Structure-Guided Modification of Heterocyclic Antagonists of the P2Y14 Receptor
Jinha Yu, Antonella Ciancetta, Steven Dudas, Sierra Duca, Justine Lottermoser, Kenneth A. Jacobson
SJR Q1Journal of Medicinal ChemistryOA

The P2Y<sub>14</sub> receptor (P2Y<sub>14</sub>R) mediates inflammatory activity by activating neutrophil motility, but few classes of antagonists are known. We have explored the structure-activity relationship of a 3-(4-phenyl-1 H-1,2,3-triazol-1-yl)-5-(aryl)benzoic acid antagonist scaffold, assisted by docking and molecular dynamics (MD) simulation at a P2Y<sub>14</sub>R homology model. A computational pipeline using the High Throughput MD Python environment guided the analogue design. Selecti

PhysiologyBiochemistry, Genetics and Molecular Biology
2
Article|41 citations·2013
New RNA Purine Building Blocks, 4′‐Selenopurine Nucleosides: First Synthesis and Unusual Mixture of Sugar Puckerings
Jinha Yu, Jin‐Hee Kim, Hyuk Woo Lee, Varughese Alexander, Hee‐Chul Ahn, Won Jun Choi, Jung‐Won Choi, Lak Shin Jeong
SJR Q1Chemistry - A European Journal

Writer's blocks: The first synthesis of RNA purine building blocks, 4'-selenoadenosine and 4'-selenoguanosine was achieved from D-ribose by regioisomeric rearrangement, which was confirmed by X-ray crystallography. 4'-Selenoadenosine exists in an unusual mixture of north and south conformers in the solid state.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|34 citations·2017
Polypharmacology ofN6-(3-Iodobenzyl)adenosine-5′-N-methyluronamide (IB-MECA) and Related A3Adenosine Receptor Ligands: Peroxisome Proliferator Activated Receptor (PPAR) γ Partial Agonist and PPARδ Antagonist Activity Suggests Their Antidiabetic Potential
Jinha Yu, Se-Yeon Ahn, Hee Jin Kim, Moon Young Lee, Sungjin Ahn, Jung‐Min Kim, Sun Hee Jin, Eunyoung Lee, Gyudong Kim, Jae Hoon Cheong, Kenneth A. Jacobson, Lak Shin Jeong
SJR Q1Journal of Medicinal ChemistryOA

A 3 adenosine receptor (AR) ligands including A 3 AR agonist, N 6 -(3-iodobenzyl)adenosine-5′- N -methyluronamide ( 1a, IB-MECA) were examined for adiponectin production in human bone marrow mesenchymal stem cells (hBM-MSCs). In this model, 1a significantly increased adiponectin production, which is associated with improved insulin sensitivity. However, A 3 AR antagonists also promoted adiponectin production in hBM-MSCs, indicating that the A 3 AR pathway may not be directly involved in the adip

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|27 citations·2017
N6-Substituted 5′-N-Methylcarbamoyl-4′-selenoadenosines as Potent and Selective A3 Adenosine Receptor Agonists with Unusual Sugar Puckering and Nucleobase Orientation
Jinha Yu, Long Zhao, Jongmi Park, Hyuk Woo Lee, Pramod K. Sahu, Minghua Cui, Steven M. Moss, Eva Hammes, Eugene Warnick, Zhan-Guo Gao, Minsoo Noh, Sun Choi
SJR Q1Journal of Medicinal ChemistryOA

Potent and selective A 3 adenosine receptor (AR) agonists were identified by the replacement of 4′-oxo- or 4′-thionucleosides with bioisosteric selenium. Unlike previous agonists, 4′-seleno analogues preferred a glycosidic syn conformation and South sugar puckering, as shown in the X-ray crystal structure of 5′- N -methylcarbamoyl derivative 3p . Among the compounds tested, N 6 -3-iodobenzyl analogue 3d was found to be the most potent A 3 AR full agonist ( K i = 0.57 nM), which was ≥800- and 190

PhysiologyBiochemistry, Genetics and Molecular Biology
5
Article|17 citations·2022
Discovery of dioxo-benzo[b]thiophene derivatives as potent YAP-TEAD interaction inhibitors for treating breast cancer
Youngchai Son, Jaeyeal Kim, Yong‐Chan Kim, Sung-Gil Chi, Tackhoon Kim, Jinha Yu
SJR Q1Bioorganic Chemistry
Cell BiologyBiochemistry, Genetics and Molecular Biology
6
Article|11 citations·2015
Design, Synthesis and Cellular Metabolism Study of 4′-Selenonucleosides
Jinha Yu, Pramod K. Sahu, Gyudong Kim, Shuhao Qu, Yoojin Choi, Jayoung Song, Sang Kook Lee, Minsoo Noh, Sunghyouk Park, Lak Shin Jeong
SJR Q3Future Medicinal Chemistry

BACKGROUND: 4'-seleno-homonucleosides were synthesized as next-generation nucleosides, and their cellular phosphorylation was studied to confirm the hypothesis that bulky selenium atom can sterically hinder the approach of cellular nucleoside kinase to the 5'-OH for phosphorylation. RESULTS: 4'-seleno-homonucleosides (n = 2), with one-carbon homologation, were synthesized through a tandem seleno-Michael addition-SN2 ring cyclization. LC-MS analysis demonstrated that they were phosphorylated by c

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|11 citations·2012
The synthesis of (R,S)-reboxetine employing a tandem cyclic sulfate rearrangement—opening process
Jin Ha Yu, Soo Y. Ko
Tetrahedron Asymmetry
Organic ChemistryChemistry
8
Article|7 citations·2021
Design and Synthesis of 2,6-Disubstituted-4′-Selenoadenosine-5′-N,N-Dimethyluronamide Derivatives as Human A3 Adenosine Receptor Antagonists
Hongseok Choi, Kenneth A. Jacobson, Jinha Yu, Lak Shin Jeong
SJR Q1PharmaceuticalsOA

A new series of 4′-selenoadenosine-5′-N,N-dimethyluronamide derivatives as highly potent and selective human A3 adenosine receptor (hA3AR) antagonists, is described. The highly selective A3AR agonists, 4′-selenoadenosine-5′-N-methyluronamides were successfully converted into selective antagonists by adding a second N-methyl group to the 5′-uronamide position. All the synthesized compounds showed medium to high binding affinity at the hA3AR. Among the synthesized compounds, 2-H-N6-3-iodobenzylami

PhysiologyBiochemistry, Genetics and Molecular Biology
9
Article|6 citations·2018
Structure activity relationship of 2-arylalkynyl-adenine derivatives as human A 3 adenosine receptor antagonists
Jinha Yu, Philip Z. Mannes, Kwan‐Young Jung, Antonella Ciancetta, Amelia Bitant, David I. Lieberman, Sami S. Khaznadar, John A. Auchampach, Zhan‐Guo Gao, Kenneth A. Jacobson
MedChemCommOA

Adenines that incorporate known agonist affinity-enhancing substituents are A <sub>3</sub> AR-selective antagonists.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|6 citations·2022
Design, Synthesis and Biological Evaluation of 1,3,5-Triazine Derivatives Targeting hA1 and hA3 Adenosine Receptor
Sujin Park, Yujin Ahn, Yong‐Chan Kim, Eun Joo Roh, Yoonji Lee, Chaebin Han, Hee Min Yoo, Jinha Yu
SJR Q1MoleculesOA

Adenosine mediates various physiological activities in the body. Adenosine receptors (ARs) are widely expressed in tumors and the tumor microenvironment (TME), and they induce tumor proliferation and suppress immune cell function. There are four types of human adenosine receptor (hARs): hA1, hA2A, hA2B, and hA3. Both hA1 and hA3 AR play an important role in tumor proliferation. We designed and synthesized novel 1,3,5-triazine derivatives through amination and Suzuki coupling, and evaluated them

PhysiologyBiochemistry, Genetics and Molecular Biology
11
Article|5 citations·2018
Correlation study between A3 adenosine receptor binding affinity and anti-renal interstitial fibrosis activity of truncated adenosine derivatives
Jinha Yu, Gyudong Kim, Dnyandev B. Jarhad, Hyuk Woo Lee, Jiyoun Lee, Chong Woo Park, Hunjoo Ha, Lak Shin Jeong
SJR Q1Archives of Pharmacal Research
PhysiologyBiochemistry, Genetics and Molecular Biology
12
Article|3 citations·2019
Synthesis and anti-HIV activity of l-2′,3′-Dideoxy-4′-selenonucleosides (l-4′-Se-ddNs)
Jinha Yu, Gyudong Kim, Dnyandev B. Jarhad, Hong‐Rae Kim, Lak Shin Jeong
SJR Q1Archives of Pharmacal Research
Infectious DiseasesMedicine
13
Article|2 citations·2023
Synthesis of oligonucleotides containing 5′-homo-4′-selenouridine derivative and its increased resistance against nuclease
Jinha Yu, Ji Won Kim, Girish Chandra, Noriko Saito–Tarashima, Yuhei Nogi, Masashi Ota, Noriaki Minakawa, Lak Shin Jeong
SJR Q2Bioorganic & Medicinal Chemistry Letters
Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|2 citations·2019
Asymmetric Synthesis of Fluoro‐MLN4924 as a Selective NEDD8‐Activating Enzyme (NAE) Inhibitor
Hong‐Rae Kim, Dnyandev B. Jarhad, Pramod K. Sahu, Kisu Sung, Da-young An, Young Eum Hyun, Jinha Yu, Lak Shin Jeong
SJR Q2Asian Journal of Organic Chemistry

Abstract Based on bioisosteric rationale, fluorinated analogues of MLN4924, which is a selective NEDD8‐activating enzyme inhibitor, were designed and their asymmetric syntheses were accomplished via stereoselective reduction, regioselective isopropylidene cleavage and diethylaminosulfur trifluoride (DAST) fluorination as key steps.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|2 citations·2025
Design, Synthesis and Biological Evaluation of N6‐Substituted‐C2‐Alkynyl‐4′‐Thionucleoside and 4′‐Trucatedthionucleoside Derivatives as Novel A3 Adenosine Receptor Ligands
Vikas R. Aswar, Dnyandev B. Jarhad, Jiyoon Song, Jinha Yu, Lak Shin Jeong
SJR Q1ChemMedChemOA

Adenosine receptors (ARs) play crucial roles in various physiological processes, making them significant targets for therapeutic intervention. This study focuses on the design, synthesis, and evaluation of N 6‐substituted‐ C 2‐alkynyl‐4′‐thioadenosine and truncated 4′‐thioadenosine derivatives as selective ligands for the human A 3 adenosine receptor (hA 3 AR). Binding affinity assays demonstrated that modifications at the C 2‐alkyne and N 6‐amine positions significantly influenced receptor sele

PhysiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyPhysiologyToxicologyPolymers and PlasticsInfectious DiseasesCell Biology

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