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Jong Dok Baek

Yonsei University · Medicine

About the Lab

Professor Jong Dok Baek's research lab specializes in medical image reconstruction and denoising, with a strong focus on computational imaging in X-ray computed tomography (CT). The lab investigates advanced machine learning techniques—particularly convolutional neural networks (CNNs)—to improve image quality by reducing noise while preserving critical anatomical details. Key research directions include developing novel loss functions for CNN-based denoisers, analyzing nonstationary noise characteristics using noise power spectra (NPS), and designing efficient model observers for task-based image quality assessment in low-dose and breast CT. The lab also explores the impact of detector design, such as pixel binning and spatial resolution, on image noise and diagnostic accuracy.

computed tomographyimage denoisingdeep learningnoise power spectrummodel observer

Research Overview

Papers
156
Total Citations
1,224
Papers (5y)
53
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
53total
2022
2023
2024
2025
2026
Citations per year (5y)
280total
20222023202420252026

Selected Papers

15
1
Article|97 citations·2019
A performance comparison of convolutional neural network‐based image denoising methods: The effect of loss functions on low‐dose CT images
Byeongjoon Kim, Minah Han, Hyunjung Shim, Jongduk Baek
SJR Q1Medical PhysicsOA

PURPOSE: Convolutional neural network (CNN)-based image denoising techniques have shown promising results in low-dose CT denoising. However, CNN often introduces blurring in denoised images when trained with a widely used pixel-level loss function. Perceptual loss and adversarial loss have been proposed recently to further improve the image denoising performance. In this paper, we investigate the effect of different loss functions on image denoising performance using task-based image quality ass

Radiology, Nuclear Medicine and ImagingMedicine
2
Article|76 citations·2010
The noise power spectrum in CT with direct fan beam reconstruction
Jongduk Baek, Norbert J. Pelc
SJR Q1Medical PhysicsOA

The noise power spectrum (NPS) is a useful metric for understanding the noise content in images. To examine some unique properties of the NPS of fan beam CT, the authors derived an analytical expression for the NPS of fan beam CT and validated it with computer simulations. The nonstationary noise behavior of fan beam CT was examined by analyzing local regions and the entire field-of-view (FOV). This was performed for cases with uniform as well as nonuniform noise across the detector cells and ac

Radiology, Nuclear Medicine and ImagingMedicine
3
Article|66 citations·2013
To bin or not to bin? The effect of CT system limiting resolution on noise and detectability
Jongduk Baek, Angel R. Pineda, Norbert J. Pelc
SJR Q1Physics in Medicine and Biology

We examine the noise advantages of having a computed tomography (CT) detector whose spatial resolution is significantly better (e.g. a factor of 2) than needed for a desired resolution in the reconstructed images. The effective resolution of detectors in x-ray CT is sometimes degraded by binning cells because the small cell size and fine sampling are not needed to achieve the desired resolution (e.g. with flat panel detectors). We studied the effect of the binning process on the noise in the rec

Radiology, Nuclear Medicine and ImagingMedicine
4
Article|58 citations·2011
Local and global 3D noise power spectrum in cone‐beam CT system with FDK reconstruction
Jongduk Baek, Norbert J. Pelc
SJR Q1Medical PhysicsOA

PURPOSE: The authors examine the nonstationary noise behavior of a cone-beam CT system with FDK reconstruction. METHODS: To investigate the nonstationary noise behavior, an analytical expression for the NPS of local volumes and an entire volume was derived and quantitatively compared to the NPS estimated from experimental air and water images. RESULTS: The NPS of local volumes at different locations along the z-axis showed radial symmetry in the f(x)-f(y) plane and different missing cone regions

Radiology, Nuclear Medicine and ImagingMedicine
5
Article|42 citations·2020
Rigid and non-rigid motion artifact reduction in X-ray CT using attention module
Youngjun Ko, Seunghyuk Moon, Jongduk Baek, Hyunjung Shim
SJR Q1Medical Image Analysis
Radiology, Nuclear Medicine and ImagingMedicine
6
Article|28 citations·2021
Low‐dose CT denoising via convolutional neural network with an observer loss function
Minah Han, Hyunjung Shim, Jongduk Baek
SJR Q1Medical Physics

PURPOSE: Convolutional neural network (CNN)-based denoising is an effective method for reducing complex computed tomography (CT) noise. However, the image blur induced by denoising processes is a major concern. The main source of image blur is the pixel-level loss (e.g., mean squared error [MSE] and mean absolute error [MAE]) used to train a CNN denoiser. To reduce the image blur, feature-level loss is utilized to train a CNN denoiser. A CNN denoiser trained using visual geometry group (VGG) los

Biomedical EngineeringEngineering
7
Article|26 citations·2021
Weakly-supervised progressive denoising with unpaired CT images
Byeongjoon Kim, Hyunjung Shim, Jongduk Baek
SJR Q1Medical Image Analysis
Radiology, Nuclear Medicine and ImagingMedicine
8
Article|26 citations·2022
Convolutional neural network–based metal and streak artifacts reduction in dental CT images with sparse‐view sampling scheme
Seong-Jun Kim, Junhyun Ahn, Byeongjoon Kim, Chulhong Kim, Jongduk Baek
SJR Q1Medical Physics

PURPOSE: Sparse-view sampling has attracted attention for reducing the scan time and radiation dose of dental cone-beam computed tomography (CBCT). Recently, various deep learning-based image reconstruction techniques for sparse-view CT have been employed to produce high-quality image while effectively reducing streak artifacts caused by the lack of projection views. However, most of these methods do not fully consider the effects of metal implants. As sparse-view sampling strengthens the artifa

Biomedical EngineeringEngineering
9
Article|26 citations·2020
A convolutional neural network‐based model observer for breast CT images
Gihun Kim, Minah Han, Hyunjung Shim, Jongduk Baek
SJR Q1Medical Physics

PURPOSE: In this paper, we propose a convolutional neural network (CNN)-based efficient model observer for breast computed tomography (CT) images. METHODS: We first showed that the CNN-based model observer provided similar detection performance to the ideal observer (IO) for signal-known-exactly and background-known-exactly detection tasks with an uncorrelated Gaussian background noise image. We then demonstrated that a single-layer CNN without a nonlinear activation function provided similar de

Radiology, Nuclear Medicine and ImagingMedicine
10
Article|25 citations·2018
Human and model observer performance for lesion detection in breast cone beam CT images with the FDK reconstruction
Minah Han, Byeongjoon Kim, Jongduk Baek
SJR Q1PLoS ONEOA

We investigate the detectability of breast cone beam computed tomography images using human and model observers and the variations of exponent, β, of the inverse power-law spectrum for various reconstruction filters and interpolation methods in the Feldkamp-Davis-Kress (FDK) reconstruction. Using computer simulation, a breast volume with a 50% volume glandular fraction and a 2mm diameter lesion are generated and projection data are acquired. In the FDK reconstruction, projection data are apodize

Radiology, Nuclear Medicine and ImagingMedicine
11
Article|24 citations·2022
A streak artifact reduction algorithm in sparse‐view CT using a self‐supervised neural representation
Byeongjoon Kim, Hyunjung Shim, Jongduk Baek
SJR Q1Medical Physics

PURPOSE: Sparse-view computed tomography (CT) has been attracting attention for its reduced radiation dose and scanning time. However, analytical image reconstruction methods suffer from streak artifacts due to insufficient projection views. Recently, various deep learning-based methods have been developed to solve this ill-posed inverse problem. Despite their promising results, they are easily overfitted to the training data, showing limited generalizability to unseen systems and patients. In t

Radiology, Nuclear Medicine and ImagingMedicine
12
Article|23 citations·2014
A multi-source inverse-geometry CT system: initial results with an 8 spot x-ray source array
Jongduk Baek, Bruno De Man, J. Uribe, Randy Longtin, Daniel Harrison, Joseph Reynolds, V.B. Neculaes, Kristopher Frutschy, Louis P. Inzinna, Antonio Caiafa, Robert Senzig, Norbert J. Pelc
SJR Q1Physics in Medicine and Biology

We present initial experimental results of a rotating-gantry multi-source inverse-geometry CT (MS-IGCT) system. The MS-IGCT system was built with a single module of 2 × 4 x-ray sources and a 2D detector array. It produced a 75 mm in-plane field-of-view (FOV) with 160 mm axial coverage in a single gantry rotation. To evaluate system performance, a 2.5 inch diameter uniform PMMA cylinder phantom, a 200 µm diameter tungsten wire, and a euthanized rat were scanned. Each scan acquired 125 views per s

Radiology, Nuclear Medicine and ImagingMedicine
13
Article|18 citations·2020
A convolutional neural network-based anthropomorphic model observer for signal-known-statistically and background-known-statistically detection tasks
Minah Han, Jongduk Baek
SJR Q1Physics in Medicine and Biology

The purpose of this study is implementation of an anthropomorphic model observer using a convolutional neural network (CNN) for signal-known-statistically (SKS) and background-known-statistically (BKS) detection tasks. We conduct SKS/BKS detection tasks on simulated cone beam computed tomography (CBCT) images with eight types of signal and randomly varied breast anatomical backgrounds. To predict human observer performance, we use conventional anthropomorphic model observers (i.e. the non-prewhi

Computer Vision and Pattern RecognitionComputer Science
14
Article|17 citations·2011
Effect of detector lag on CT noise power spectra
Jongduk Baek, Norbert J. Pelc
SJR Q1Medical Physics

The shape of the NPS depends on the detector lag coefficients, location of the region, and the number of views used in the reconstruction. In general, the noise correlation caused by detector lag decreased the amplitude of the NPS.

Biomedical EngineeringEngineering
15
Article|15 citations·2011
Use of sphere phantoms to measure the 3D MTF of FDK reconstructions
Jongduk Baek, Norbert J. Pelc
Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE

To assess the resolution performance of modern CT scanners, a method to measure the 3D MTF is needed. Computationally, a point object is an ideal test phantom but is difficult to apply experimentally. Recently, Thornton et al. described a method to measure the directional MTF using a sphere phantom. We tested this method for FDK reconstructions by simulating a sphere and a point object centered at (0.01 cm , 0.01 cm, 0.01 cm) and (0.01 cm, 0.01 cm, 10.01 cm) and compared the directional MTF esti

Biomedical EngineeringEngineering

Research Areas

Radiology, Nuclear Medicine and ImagingBiomedical EngineeringPulmonary and Respiratory MedicineComputer Vision and Pattern RecognitionArtificial IntelligenceElectrical and Electronic Engineering

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