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Manjin Kim

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Manjin Kim's research lab specializes in cutting-edge biophotonics and cellular signaling, focusing on optogenetic tools and live-cell imaging to dissect fundamental mechanisms of cell migration, ciliogenesis, and growth factor signaling. The lab develops innovative optical techniques—such as wavefront shaping and optogenetic systems—to achieve precise spatiotemporal control of intracellular signals like Ca²⁺ and TGF-β, enabling high-resolution dissection of dynamic cellular processes. A central theme is understanding how cytoskeletal dynamics, transcriptional coactivators (YAP/TAZ), and small GTPases (Rac1, Cdc42) coordinate to regulate cell polarity and fate decisions. The lab also applies next-generation sequencing to identify genetic causes of inherited retinal diseases, bridging basic mechanisms with clinical applications.

optogeneticscell migrationciliogenesisCa2+ signalingTGF-β signaling

Research Overview

Papers
64
Total Citations
1,085
Papers (5y)
18
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
18total
2022
2023
2024
2025
2026
Citations per year (5y)
54total
20222023202420252026

Selected Papers

15
1
Article|196 citations·2014
Spatiotemporal Control of Fibroblast Growth Factor Receptor Signals by Blue Light
Nury Kim, Jin Man Kim, Minji Lee, Cha Yeon Kim, Ki-Young Chang, Won Do Heo
Chemistry & Biology
Plant ScienceAgricultural and Biological Sciences
2
Article|196 citations·2015
Actin remodelling factors control ciliogenesis by regulating YAP/TAZ activity and vesicle trafficking
Jongshin Kim, Haiin Jo, Hyowon Hong, Min Hwan Kim, Jin Man Kim, Jake June-Koo Lee, Won Do Heo, Joon Kim
SJR Q1Nature CommunicationsOA

Primary cilia exert a profound impact on cell signalling and cell cycle progression. Recently, actin cytoskeleton destabilization has been recognized as a dominant inducer of ciliogenesis, but the exact mechanisms regulating ciliogenesis remain poorly understood. Here we show that the actin cytoskeleton remodelling controls ciliogenesis by regulating transcriptional coactivator YAP/TAZ as well as ciliary vesicle trafficking. Cytoplasmic retention of YAP/TAZ correlates with active ciliogenesis ei

Cell BiologyBiochemistry, Genetics and Molecular Biology
3
Article|84 citations·2016
Optogenetic oligomerization of Rab GTPases regulates intracellular membrane trafficking
Mai K. Nguyen, Cha Yeon Kim, Jin Man Kim, Byung Ouk Park, Sangkyu Lee, Hyerim Park, Won Do Heo
SJR Q1Nature Chemical Biology
Cellular and Molecular NeuroscienceNeuroscience
4
Article|58 citations·2019
Genetic Mutation Profiles in Korean Patients with Inherited Retinal Diseases
김민석, 주광식, 성문우, 김만진, 박규형, 박성섭, 우세준

Background: Because of genetically and phenotypically heterogenous features, identification of causative genes for inherited retinal diseases (IRD) is essential for diagnosis and treatment in coming gene therapy era. To date, there are no large-scale data of the genes responsible for IRD in Korea. The aim of this study was to identify the distribution of genetic defects in IRD patients in Korea. Methods: Medical records and DNA samples from 86 clinically diagnosed IRD patients were consecutively

5
Article|51 citations·2015
Optogenetic control of cell signaling pathway through scattering skull using wavefront shaping
Jonghee Yoon, Minji Lee, KyeoReh Lee, Nury Kim, Jin Man Kim, Jongchan Park, Hyeonseung Yu, Chulhee Choi, Won Do Heo, YongKeun Park
SJR Q1Scientific ReportsOA

We introduce a non-invasive approach for optogenetic regulation in biological cells through highly scattering skull tissue using wavefront shaping. The wavefront of the incident light was systematically controlled using a spatial light modulator in order to overcome multiple light-scattering in a mouse skull layer and to focus light on the target cells. We demonstrate that illumination with shaped waves enables spatiotemporal regulation of intracellular Ca(2+) level at the individual-cell level.

Acoustics and UltrasonicsPhysics and Astronomy
6
Article|45 citations·2016
Optogenetic toolkit reveals the role of Ca 2+ sparklets in coordinated cell migration
Jin Man Kim, Minji Lee, Nury Kim, Won Do Heo
SJR Q1Proceedings of the National Academy of SciencesOA

Cell migration is controlled by various Ca(2+) signals. Local Ca(2+) signals, in particular, have been identified as versatile modulators of cell migration because of their spatiotemporal diversity. However, little is known about how local Ca(2+) signals coordinate between the front and rear regions in directionally migrating cells. Here, we elucidate the spatial role of local Ca(2+) signals in directed cell migration through combinatorial application of an optogenetic toolkit. An optically guid

Cellular and Molecular NeuroscienceNeuroscience
7
Article|43 citations·2017
Spatiotemporal Control of TGF-β Signaling with Light
Yuchao Li, Minji Lee, Nury Kim, Guoyu Wu, Difan Deng, Jin Man Kim, Xuedong Liu, Won Do Heo, Zhike Zi
SJR Q1ACS Synthetic BiologyOA

Cells employ signaling pathways to make decisions in response to changes in their immediate environment. Transforming growth factor beta (TGF-β) is an important growth factor that regulates many cellular functions in development and disease. Although the molecular mechanisms of TGF-β signaling have been well studied, our understanding of this pathway is limited by the lack of tools that allow the control of TGF-β signaling with high spatiotemporal resolution. Here, we developed an optogenetic sy

Plant ScienceAgricultural and Biological Sciences
8
Article|40 citations·2016
PLEKHG3 enhances polarized cell migration by activating actin filaments at the cell front
Trang Nguyen, Wei Sun Park, Byung Ouk Park, Cha Yeon Kim, Yohan Oh, Jin Man Kim, Hana Choi, Taeyoon Kyung, Cheol‐Hee Kim, Gabsang Lee, Klaus M. Hahn, Tobias Meyer
SJR Q1Proceedings of the National Academy of SciencesOA

Cells migrate by directing Ras-related C3 botulinum toxin substrate 1 (Rac1) and cell division control protein 42 (Cdc42) activities and by polymerizing actin toward the leading edge of the cell. Previous studies have proposed that this polarization process requires a local positive feedback in the leading edge involving Rac small GTPase and actin polymerization with PI3K likely playing a coordinating role. Here, we show that the pleckstrin homology and RhoGEF domain containing G3 (PLEKHG3) is a

Cell BiologyBiochemistry, Genetics and Molecular Biology
9
Article|21 citations·2017
G protein-coupled calcium-sensing receptor is a crucial mediator of MTA-induced biological activities
Jin Man Kim, Seul-Ki Choi, Kyu Hwan Kwack, Sun‐Young Kim, Hyeon‐Woo Lee, Kyungpyo Park
SJR Q1Biomaterials
BiotechnologyBiochemistry, Genetics and Molecular Biology
10
Article|20 citations·2013
Inhibition of matrix metalloproteinases expression in human dental pulp cells by all-trans retinoic acid
Jin Man Kim, Sang Wook Kang, Su-Mi Shin, Duck Su Kim, Kyong-Kyu Choi, Eun-Cheol Kim, Sun‐Young Kim
SJR Q1International Journal of Oral ScienceOA

All-trans retinoic acid (ATRA) inhibits matrix metalloproteinase (MMP)-2 and MMP-9 in synovial fibroblasts, skin fibroblasts, bronchoalveolar lavage cells and cancer cells, but activates MMP-9 in neuroblast and leukemia cells. Very little is known regarding whether ATRA can activate or inhibit MMPs in human dental pulp cells (HDPCs). The purpose of this study was to determine the effects of ATRA on the production and secretion of MMP-2 and -9 in HDPCs. The productions and messenger RNA (mRNA) ex

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|17 citations·2021
A mechanogenetic role for the actomyosin complex in branching morphogenesis of epithelial organs
Jin Man Kim, YoungJu Jo, Ju Won Jung, Kyungpyo Park
SJR Q1DevelopmentOA

The actomyosin complex plays crucial roles in various life processes by balancing the forces generated by cellular components. In addition to its physical function, the actomyosin complex participates in mechanotransduction. However, the exact role of actomyosin contractility in force transmission and the related transcriptional changes during morphogenesis are not fully understood. Here, we report a mechanogenetic role of the actomyosin complex in branching morphogenesis using an organotypic cu

Cell BiologyBiochemistry, Genetics and Molecular Biology
12
Article|16 citations·2020
Targeting Actomyosin Contractility Suppresses Malignant Phenotypes of Acute Myeloid Leukemia Cells
Fengjiao Chang, So Jung Kong, Lele Wang, Beom K. Choi, Hyewon Lee, Chan Kim, Jin Man Kim, Kyungpyo Park
SJR Q1International Journal of Molecular SciencesOA

Actomyosin-mediated contractility is required for the majority of force-driven cellular events such as cell division, adhesion, and migration. Under pathological conditions, the role of actomyosin contractility in malignant phenotypes of various solid tumors has been extensively discussed, but the pathophysiological relevance in hematopoietic malignancies has yet to be elucidated. In this study, we found enhanced actomyosin contractility in diverse acute myeloid leukemia (AML) cell lines represe

Cell BiologyBiochemistry, Genetics and Molecular Biology
13
Article|14 citations·2022
Functional expression of oxytocin receptors in pulp-dentin complex
Ju Won Jung, So Young Park, Eun Jin Seo, Il Ho Jang, Yeji Park, Dasun Lee, Dohyun Kim, Jin Man Kim
SJR Q1BiomaterialsOA
Social PsychologyPsychology
14
Article|14 citations·2017
TRPM7 Is Involved in Volume Regulation in Salivary Glands
Jin Man Kim, Se‐Young Choi, K. Park
SJR Q1Journal of Dental Research

Under hypotonic conditions, the regulatory volume decrease (RVD) is essential to maintain physiological homeostasis and functions in diverse biological systems. Intracellular Ca 2+ has been reported as an important mediator of this response, but the underlying Ca 2+ mechanism responsible for RVD is still controversial. Here we investigate the role of Ca 2+ in the RVD response using live-cell imaging, microspectrofluorimetry, and a patch-clamp technique. A typical RVD was observed in submandibula

Sensory SystemsNeuroscience
15
Article|7 citations·2025
Development of MDM2‐Targeting PROTAC for Advancing Bone Regeneration
Seongkeun Jeong, Jae‐Kook Cha, Wasim Ahmed, Jaewan Kim, Jaewan Kim, Minsup Kim, Kyung Tae Hong, Wonji Choi, Sunjoo Choi, Tae Hyeon Yoo, Hyun‐Ju An, Susun An
SJR Q1Advanced ScienceOA

Proteolysis-targeting chimeras (PROTACs) degrade target proteins through the ubiquitin-proteasome system. To date, PROTACs are primarily used to treat various diseases; however, they have not been applied in regenerative therapy. Herein, this work introduces MDM2-targeting PROTACs customized for application in bone regeneration. An MDM2-PROTAC library is constructed by combining Nutlin-3 and CRBN ligands with various linker designs. Through a multistep validation process, this work develops MDM2

Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Cell BiologyPlant ScienceRadiationMolecular BiologyCellular and Molecular NeuroscienceAcoustics and Ultrasonics

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