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Minee-Liane Choi

Korea Advanced Institute of Science and Technology · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Minee-Liane Choi's research lab focuses on the role of adult hippocampal neurogenesis in cognitive functions, particularly pattern separation, using behavioral and optogenetic approaches in mouse models. The lab also investigates neuroinflammatory mechanisms in neurodegenerative diseases, especially Parkinson’s disease, with a focus on astrocyte-specific RNA editing via ADAR1 and its impact on innate immune responses. Additional research directions include the generation and characterization of human iPSC-derived neural cells and the study of oxidative stress and neuronal death in disease contexts. The lab integrates behavioral neuroscience, stem cell biology, and molecular mechanisms to understand brain circuit function and dysfunction.

hippocampal neurogenesisRNA editingneuroinflammationalpha-synucleinoxidative stress

Research Overview

Papers
12
Total Citations
1,665
Papers (5y)
12
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
12total
2009
2022
2023
2024
2025
Citations per year (5y)
1,665total
20092022202320242025

Selected Papers

12
1
Article|1,655 citations·2009
A Functional Role for Adult Hippocampal Neurogenesis in Spatial Pattern Separation
Claire D. Clelland, Minee-Liane Choi, Carola Romberg, Gregory D. Clemenson, Alexandra M. C. Fragniere, Pam Tyers, Sebastian Jessberger, Lisa M. Saksida, Roger A. Barker, Fred H. Gage, Timothy J. Bussey
SJR Q1ScienceOA

The dentate gyrus (DG) of the mammalian hippocampus is hypothesized to mediate pattern separation-the formation of distinct and orthogonal representations of mnemonic information-and also undergoes neurogenesis throughout life. How neurogenesis contributes to hippocampal function is largely unknown. Using adult mice in which hippocampal neurogenesis was ablated, we found specific impairments in spatial discrimination with two behavioral assays: (i) a spatial navigation radial arm maze task and (

Developmental NeuroscienceNeuroscience
2
Article|10 citations·2025
Astrocytic RNA editing regulates the host immune response to alpha-synuclein
Karishma D’Sa, Minee-Liane Choi, Aaron Z. Wagen, Núria Setó‐Salvia, Olga Kopach, James R. Evans, Margarida Rodrigues, Patricia Lopez-Garcia, Joanne Lachica, Benjamin Clarke, Jaijeet Singh, Ali Ghareeb
SJR Q1Science AdvancesOA

RNA editing is a posttranscriptional mechanism that targets changes in RNA transcripts to modulate innate immune responses. We report the role of astrocyte-specific, ADAR1-mediated RNA editing in neuroinflammation in Parkinson's disease (PD). We generated human induced pluripotent stem cell-derived astrocytes, neurons and cocultures and exposed them to small soluble alpha-synuclein aggregates. Oligomeric alpha-synuclein triggered an inflammatory glial state associated with Toll-like receptor act

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Preprint|0 citations·2022
Live-cell imaging; Calcium imaging with Fura-2 v1
Minee-Liane Choi
OA

This protocol describes a method to perform calcium imaging with Fura-2 (live-cell imaging)

Radiology, Nuclear Medicine and ImagingMedicine
4
Preprint|0 citations·2025
Autonomous neuronal resilience under metabolic stress highlights fundamental differences between hESC and hiPSC-derived neurons
SeungJu Yoo, Eunjin Yang, Minee-Liane Choi
bioRxiv (Cold Spring Harbor Laboratory)OA

ABSTRACT Human induced pluripotent stem cells (hiPSCs) aim to replicate the developmental and functional capacity of human embryonic stem cells (hESCs). Here, we identify neuronal resilience under metabolic stress as a critical parameter for benchmarking equivalence. Without medium replenishment, hESC-derived cortical neurons underwent neural resurrection —a spontaneous recovery marked by increased cell density, preserved morphology, and sustained calcium signaling and mitochondrial function for

Cellular and Molecular NeuroscienceNeuroscience
5
Preprint|0 citations·2024
Electrophysiology with iPSC-derived neurons v1
Minee-Liane Choi
OA

This protocol describes the method to perform patch-clamp recordings of iPSC-derived neurons.

Cardiology and Cardiovascular MedicineMedicine
6
Preprint|0 citations·2024
Aggregation of human recombinant alpha-synuclein v1
Minee-Liane Choi
OA

This protocol describes a method of generating aggregation of human recombinant alpha-synuclein.

NeurologyMedicine
7
Preprint|0 citations·2025
Organelle-Aware Representation Learning Enables Label-Free Detection of Mitochondrial Dysfunction in Live Human Neurons
SeungJu Yoo, E. Yang, Seohyun Kim, Hoewon Park, Daesoo Kim, Ki‐Jun Yoon, Minee-Liane Choi
bioRxiv (Cold Spring Harbor Laboratory)OA

Abstract Mitochondrial dysfunction is a convergent hallmark of neurodegenerative diseases and represents a promising biomarker for early diagnosis and therapy. However, current in vitro assays rely on fluorescence or electron microscopy, which are invasive, low-throughput, and incompatible with longitudinal analysis. Here, we present a noninvasive framework by integrating label-free optical diffraction tomography (ODT) with organelle-aware representation learning to detect subtle mitochondrial d

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Preprint|0 citations·2023
Generation of hiPSC derived cortical astrocytes v1
Minee-Liane Choi
OA

This is a modified protocol that describes how to generate cortical region-specific astrocytes based on Gupta et al., 2012, Serio et al., 2013 and Seto-Salvia et al., 2021

NeurologyNeuroscience
9
Preprint|0 citations·2022
Live-cell imaging; cell death assay v1
Minee-Liane Choi
OA

This protocol contains instructions for examining cell death in live-cell imaging.

BiophysicsBiochemistry, Genetics and Molecular Biology
10
Preprint|0 citations·2022
MitoGFP Generation and Transduction v1
Minee-Liane Choi
OA

This protocol details the packaging of plasmids that are on a lentivirus backbone into a lentiviral construct, as well as cell transduction.

GeneticsBiochemistry, Genetics and Molecular Biology
11
Preprint|0 citations·2022
Live-cell imaging; reactive oxygen species (Superoxide) v1
Minee-Liane Choi
OA

This protocol contains the instruction for measuring superoxide using dihydroethidium (HEt) which allows the rate of superoxide generation to be measured which is present as the ratio of the oxidized form of the dye over the reduced form. HEt allows the rate of cytosolic superoxide generation to be measured, by the slope of the ratio of oxidized dye to reduced dye.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Preprint|0 citations·2022
MitoGFP Generation and Transduction v1
Minee-Liane Choi
OA

This protocol details the packaging of plasmids that are on a lentivirus backbone into a lentiviral construct, as well as cell transduction.

GeneticsBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyNeurologyGeneticsDevelopmental NeuroscienceRadiology, Nuclear Medicine and ImagingCellular and Molecular Neuroscience

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