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So Ah Lee

Sungkyunkwan University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor So Ah Lee's research lab specializes in cardiovascular and regenerative medicine, focusing on the molecular mechanisms of hypertrophic cardiomyopathy using patient-specific induced pluripotent stem cell-derived cardiomyocytes. The lab develops advanced biomaterials and biofabrication techniques—such as PEG hydrogels, micropatterning, and aligned scaffolds—to study cell mechanics, tissue organization, and therapeutic delivery. A key focus is on creating open-source, accessible tools for functional analysis of cardiac tissues, including image-based contractility monitoring in 3D organoids.

cardiomyopathyiPSC-derived organoidsbiomaterialsbiofabricationcardiac regeneration

Research Overview

Papers
54
Total Citations
1,632
Papers (5y)
24
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
24total
2022
2023
2024
2025
2026
Citations per year (5y)
194total
20222023202420252026

Selected Papers

15
1
Article|234 citations·2020
Wnt Activation and Reduced Cell-Cell Contact Synergistically Induce Massive Expansion of Functional Human iPSC-Derived Cardiomyocytes
Jan W. Buikema, Soah Lee, William R. Goodyer, Renée G. C. Maas, Orlando Chirikian, Guang Li, Yi Miao, Sharon L. Paige, Daniel Lee, Haodi Wu, David T. Paik, Siyeon Rhee
SJR Q1Cell stem cellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|171 citations·2020
Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome
Yifei Miao, Lei Tian, Marcy Martin, Sharon L. Paige, Francisco X. Galdos, Jibiao Li, Alyssa Klein, Hao Zhang, Nan Ma, Yuning Wei, Maria Stewart, Soah Lee
SJR Q1Cell stem cellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|152 citations·2014
The effects of varying poly(ethylene glycol) hydrogel crosslinking density and the crosslinking mechanism on protein accumulation in three-dimensional hydrogels
Soah Lee, Xinming Tong, Fan Yang
SJR Q1Acta Biomaterialia
Molecular MedicineBiochemistry, Genetics and Molecular Biology
4
Article|125 citations·2019
A Premature Termination Codon Mutation in MYBPC3 Causes Hypertrophic Cardiomyopathy via Chronic Activation of Nonsense-Mediated Decay
Timon Seeger, Rajani Shrestha, Chi Keung Lam, Caressa Chen, Wesley L. McKeithan, Edward Lau, Alexa Wnorowski, George McMullen, Matthew Greenhaw, Jae-Cheol Lee, Angelos Oikonomopoulos, Soah Lee
SJR Q1CirculationOA

BACKGROUND: Hypertrophic cardiomyopathy (HCM) is frequently caused by mutations in myosin-binding protein C3 ( MYBPC3) resulting in a premature termination codon (PTC). The underlying mechanisms of how PTC mutations in MYBPC3 lead to the onset and progression of HCM are poorly understood. This study's aim was to investigate the molecular mechanisms underlying the pathogenesis of HCM associated with MYBPC3 PTC mutations by utilizing human isogenic induced pluripotent stem cell-derived cardiomyocy

Cardiology and Cardiovascular MedicineMedicine
5
Article|121 citations·2017
Bioacoustic-enabled patterning of human iPSC-derived cardiomyocytes into 3D cardiac tissue
Vahid Serpooshan, Pu Chen, Haodi Wu, Soah Lee, Arun Sharma, Daniel A. Hu, Sneha Venkatraman, Adarsh Ganesan, O. Berk Usta, Martin L. Yarmush, Fan Yang, Joseph C. Wu
SJR Q1Biomaterials
Biomedical EngineeringEngineering
6
Article|98 citations·2015
Effects of the poly(ethylene glycol) hydrogel crosslinking mechanism on protein release
Soah Lee, Xinming Tong, Fan Yang
SJR Q1Biomaterials ScienceOA

Poly(ethylene glycol) (PEG) hydrogels are widely used to deliver therapeutic biomolecules, due to high hydrophilicity, tunable physicochemical properties, and anti-fouling properties. Although different hydrogel crosslinking mechanisms are known to result in distinct network structures, it is still unknown how these various mechanisms influence biomolecule release. Here we compared the effects of chain-growth and step-growth polymerization for hydrogel crosslinking on the efficiency of protein r

Molecular MedicineBiochemistry, Genetics and Molecular Biology
7
Article|93 citations·2017
Contractile force generation by 3D hiPSC-derived cardiac tissues is enhanced by rapid establishment of cellular interconnection in matrix with muscle-mimicking stiffness
Soah Lee, Vahid Serpooshan, Xinming Tong, Sneha Venkatraman, Meelim Lee, Jaecheol Lee, Orlando Chirikian, Joseph C. Wu, Sean M. Wu, Fan Yang
SJR Q1Biomaterials
SurgeryMedicine
8
Article|76 citations·2019
Hydrogels with enhanced protein conjugation efficiency reveal stiffness-induced YAP localization in stem cells depends on biochemical cues
Soah Lee, Alice E. Stanton, Xinming Tong, Fan Yang
SJR Q1BiomaterialsOA
Cell BiologyBiochemistry, Genetics and Molecular Biology
9
Article|15 citations·2020
Simple Lithography-Free Single Cell Micropatterning using Laser-Cut Stencils
Soah Lee, Huaxiao Yang, Caressa Chen, Sneha Venkatraman, Adrija Darsha, Sean M. Wu, Joseph C. Wu, Timon Seeger
SJR Q2Journal of Visualized ExperimentsOA

Micropatterning techniques have been widely used in cell biology to study effects of controlling cell shape and size on cell fate determination at single cell resolution. Current state-of-the-art single cell micropatterning techniques involve soft lithography and micro-contact printing, which is a powerful technology, but requires trained engineering skills and certain facility support in microfabrication. These limitations require a more accessible technique. Here, we describe a simple alternat

Biomedical EngineeringEngineering
10
Article|14 citations·2016
Winner of the Young Investigator Award of the Society for Biomaterials (USA) for 2016, 10th World Biomaterials Congress, May 17–22, 2016, Montreal QC, Canada: Aligned microribbon‐like hydrogels for guiding three‐dimensional smooth muscle tissue regeneration
Soah Lee, Xinming Tong, Li‐Hsin Han, Anthony Behn, Fan Yang
SJR Q1Journal of Biomedical Materials Research Part AOA

Smooth muscle tissue is characterized by aligned structures, which is critical for its contractile functions. Smooth muscle injury is common and can be caused by various diseases and degenerative processes, and there remains a strong need to develop effective therapies for smooth muscle tissue regeneration with restored structures. To guide cell alignment, previously cells were cultured on 2D nano/microgrooved substrates, but such method is limited to fabricating 2D aligned cell sheets only. Alt

SurgeryMedicine
11
Article|14 citations·2024
Incomplete-penetrant hypertrophic cardiomyopathy MYH7 G256E mutation causes hypercontractility and elevated mitochondrial respiration
Soah Lee, Alison S. Vander Roest, Cheavar A. Blair, Kerry Y. Kao, Samantha Bremner, Matthew C. Childers, Divya Pathak, Paul V. Heinrich, Daniel Lee, Orlando Chirikian, Saffie Mohran, Brock Roberts
SJR Q1Proceedings of the National Academy of SciencesOA

Determining the pathogenicity of hypertrophic cardiomyopathy–associated mutations in the β-myosin heavy chain ( MYH7 ) can be challenging due to its variable penetrance and clinical severity. This study investigates the early pathogenic effects of the incomplete-penetrant MYH7 G256E mutation on myosin function that may trigger pathogenic adaptations and hypertrophy. We hypothesized that the G256E mutation would alter myosin biomechanical function, leading to changes in cellular functions. We dev

Cardiology and Cardiovascular MedicineMedicine
12
Article|10 citations·2024
PIV-MyoMonitor: an accessible particle image velocimetry-based software tool for advanced contractility assessment of cardiac organoids
Hoyeon Lee, Bo Young Kim, Jiyue Yun, Jinseung Bae, Sungsu Park, Junseok Jeon, Hye Ryoun Jang, Jae-Cheol Lee, Soah Lee
SJR Q1Frontiers in Bioengineering and BiotechnologyOA

Induced pluripotent stem cell (iPSC)-derived cardiac organoids offer a versatile platform for personalized cardiac toxicity assessment, drug screening, disease modeling, and regenerative therapies. While previous image-based contractility analysis techniques allowed the assessment of contractility of two-dimensional cardiac models, they face limitations, including encountering high noise levels when applied to three-dimensional organoid models and requiring expensive equipment. Additionally, the

SurgeryMedicine
13
Article|8 citations·2024
Exploring the Anti-Diabetic Potential of Quercetagitrin through Dual Inhibition of PTPN6 and PTPN9
Geetanjali B. Gone, Geonhui Go, Gibeom Nam, Woojoo Jeong, Hye Min Kim, Soah Lee, Sang J. Chung
SJR Q1NutrientsOA

Protein tyrosine phosphatases (PTPs) are pivotal contributors to the development of type 2 diabetes (T2DM). Hence, directing interventions towards PTPs emerges as a valuable therapeutic approach for managing type 2 diabetes. In particular, PTPN6 and PTPN9 are targets for anti-diabetic effects. Through high-throughput drug screening, quercetagitrin (QG) was recognized as a dual-target inhibitor of PTPN6 and PTPN9. We observed that QG suppressed the catalytic activity of PTPN6 (IC50 = 1 μM) and PT

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Review|7 citations·2025
Integrating allostasis and emerging technologies to study complex diseases
InWha Park, Hyokyeong Gwon, Yeonjeong Jung, Bo-Young Kim, Gaeun Ju, Eugene Sin, H. An, Hye Jung Bang, Taek-Seon Yun, Seung Hwan Lee, Wonsik Lee, Choon‐Gon Jang
SJR Q1Communications BiologyOA

The study of complex diseases has traditionally relied on reductionist methods, which, although informative, tend to overlook the dynamic interactions and systemic interconnectivity inherent in biological systems. Allostasis, a framework that focuses on physiological adaptations to stress and the maintenance of stability through change, provides a valuable perspective for understanding these diseases. This review summarizes how the allostasis framework defines the cumulative physiological burden

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|2 citations·2024
Isolation of Macrocyclic Trichothecene Mycotoxins from the Lethal Toxic Mushroom Podostroma cornu-damae and Their Cytotoxic Activities
Bum Soo Lee, Yun Young Lee, Seoung Rak Lee, Seoung Rak Lee, Yoon Seo Jang, Rhim Ryoo, Wooram Park, Se−Na Kim, Soah Lee, Soah Lee, Chun Gwon Park, Ki Hyun Kim
SJR Q2SeparationsOA

Podostroma cornu-damae, one of the lethal toxic mushrooms, is known to contain macrocyclic trichothecene mycotoxins exhibiting potent cytotoxic effects, attracting attention as an important research subject for scientists interested in natural product chemistry and toxicity research. To investigate the mycotoxins from the toxic mushroom P. cornu-damae and evaluate their cytotoxic activities, the fungus was large-cultured on solid plates and successively extracted to acquire a crude methanol (MeO

PharmacologyMedicine

Research Areas

Molecular BiologyCardiology and Cardiovascular MedicineSurgeryBiomedical EngineeringMolecular MedicineCell Biology

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