Skip to main content

Soo-Young Lee

Ewha Womans University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Soo-Young Lee's research lab focuses on computational and molecular biology approaches to understand complex cellular signaling pathways and their implications in disease and regenerative processes. The lab specializes in identifying key regulatory proteins and transcription factors—such as NF-κB, STAT3, and GSK-3β—that govern immune responses, cell fate decisions, and tissue homeostasis. By integrating machine learning with experimental validation, the lab also develops predictive models for high-entropy alloys and family-friendly workplace policies, demonstrating a unique interdisciplinary approach bridging materials science and social systems. Current research directions emphasize systems biology, signal transduction, and data-driven design in both biomedical and engineering contexts.

signal transductiontranscription factorsmachine learninghigh-entropy alloyscell signaling

Research Overview

Papers
113
Total Citations
6,368
Papers (5y)
21
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
21total
2022
2023
2024
2025
2026
Citations per year (5y)
198total
20222023202420252026

Selected Papers

15
1
Article|131 citations·2003
Molecular ordering of ROS production, mitochondrial changes, and caspase activation during sodium salicylate-induced apoptosis
Young Mee Chung, Yun Soo Bae, Soo Young Lee
SJR Q1Free Radical Biology and Medicine
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|115 citations·2020
Osteoclast-associated receptor blockade prevents articular cartilage destruction via chondrocyte apoptosis regulation
Doo Ri Park, Jihee Kim, Gyeong Min Kim, Haeseung Lee, Minhee Kim, Donghyun Hwang, Hana Lee, Han Sung Kim, Wankyu Kim, Min‐Chan Park, Hyunbo Shim, Soo Young Lee
SJR Q1Nature CommunicationsOA

Osteoarthritis (OA), primarily characterized by articular cartilage destruction, is the most common form of age-related degenerative whole-joint disease. No disease-modifying treatments for OA are currently available. Although OA is primarily characterized by cartilage destruction, our understanding of the processes controlling OA progression is poor. Here, we report the association of OA with increased levels of osteoclast-associated receptor (OSCAR), an immunoglobulin-like collagen-recognition

RheumatologyMedicine
3
Article|84 citations·2011
Inactivation of Glycogen Synthase Kinase-3β Is Required for Osteoclast Differentiation
Hyun Duk Jang, Ji Hye Shin, Doo Ri Park, Jin Hee Hong, Kwiyeom Yoon, Ryeojin Ko, Chang‐Yong Ko, Han-Sung Kim, Daewon Jeong, Nacksung Kim, Soo Young Lee
SJR Q1Journal of Biological ChemistryOA

Glycogen synthase kinase-3β (GSK-3β) is a serine/threonine kinase originally identified as a regulator of glycogen deposition. Although the role of GSK-3β in osteoblasts is well characterized as a negative regulator of β-catenin, its effect on osteoclast formation remains largely unidentified. Here, we show that the GSK-3β inactivation upon receptor activator of NF-κB ligand (RANKL) stimulation is crucial for osteoclast differentiation. Regulation of GSK-3β activity in bone marrow macrophages by

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|82 citations·2016
Sirtuin 3 (SIRT3) maintains bone homeostasis by regulating AMPK-PGC-1β axis in mice
Jeong-Eun Huh, Ji Hye Shin, Eun Sun Jang, So Jeong Park, Doo Ri Park, Ryeojin Ko, Dong-Hyun Seo, Han Sung Kim, Seoung Hoon Lee, Yongwon Choi, Hyun Seok Kim, Soo Young Lee
SJR Q1Scientific ReportsOA

The mitochondrial sirtuin 3 (SIRT3) is involved in suppressing the onset of multiple pathologies, including cardiovascular disease, fatty liver, age-related hearing loss, and breast cancer. But a physiological role of SIRT3 in bone metabolism is not known. Here we show that SIRT3 is a key regulatory molecule to maintain bone homeostasis. Mice deficient in SIRT3 exhibited severe osteopenia owing to increased numbers of osteoclasts. Osteoclast precursors from Sirt3-/- mice underwent increased oste

Geriatrics and GerontologyMedicine
5
Article|52 citations·2013
PTEN regulation by the Akt/GSK-3β axis during RANKL signaling
Hyun Duk Jang, Ji Yeon Noh, Ji Hye Shin, Jingjing Lin, Soo Young Lee
SJR Q1Bone
Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|51 citations·2015
The scaffold protein RACK1 mediates the RANKL-dependent activation of p38 MAPK in osteoclast precursors
Jingjing Lin, Daekee Lee, Yongwon Choi, Soo Young Lee
SJR Q1Science Signaling

The E3 ubiquitin ligase TRAF6 [tumor necrosis factor (TNF) receptor (TNFR)-associated factor 6] and the associated kinase TAK1 [transforming growth factor-β (TGF-β)-activated kinase 1] are key components of the signaling pathways that activate nuclear factor κB (NF-κB) and mitogen-activated protein kinases (MAPKs) in response to various stimuli. The cytokine RANKL (receptor activator of NF-κB ligand) is essential for the differentiation of bone marrow cells into bone-resorbing osteoclasts throug

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|47 citations·2022
BCAT1 promotes osteoclast maturation by regulating branched-chain amino acid metabolism
Miyeon Go, Eun-Ji Shin, Seo Young Jang, Miso Nam, Geum‐Sook Hwang, Soo Young Lee
SJR Q1Experimental & Molecular MedicineOA

Branched-chain aminotransferase 1 (BCAT1) transfers the amine group on branched-chain amino acids (BCAAs) to alpha-ketoglutarate. This generates glutamate along with alpha-keto acids that are eventually oxidized to provide the cell with energy. BCAT1 thus plays a critical role in sustaining BCAA concentrations and availability as an energy source. Osteoclasts have high metabolic needs during differentiation. When we assessed the levels of amino acids in bone marrow macrophages (BMMs) that were u

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|40 citations·2006
Bimodal actions of reactive oxygen species in the differentiation and bone‐resorbing functions of osteoclasts
Hyunsoo Kim, Ick Young Kim, Soo Young Lee, Daewon Jeong
SJR Q1FEBS Letters

In order to demonstrate that cellular redox status undergoes decreased reduction during osteoclast differentiation and further decreased reduction during osteoclastic bone resorption, we analyzed gamma-glutamylcysteinyl synthetase activity, a glutathione synthesis rate-limiting enzyme, and total glutathione and thiol groups. Moderate and severe redox shifts towards a more oxidizing environment induced gradual increases and decreases in osteoclastogenesis. Moreover, while severe glutathione deple

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|38 citations·2016
A novel small-molecule PPI inhibitor targeting integrin αvβ3-osteopontin interface blocks bone resorption in vitro and prevents bone loss in mice
Doori Park, Chan-Won Park, Young-Jin Choi, Jingjing Lin, Dong-Hyun Seo, Han-Sung Kim, Soo Young Lee, In‐Cheol Kang
SJR Q1Biomaterials
Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|37 citations·2022
Pim1 promotes IFN-β production by interacting with IRF3
Ryeojin Ko, Jeongin Seo, Hana Park, Nawon Lee, Soo Young Lee
SJR Q1Experimental & Molecular MedicineOA

Abstract The Pim (proviral integration site for Moloney murine leukemia virus) proteins compose a serine threonine kinase family whose members regulate cell proliferation, migration and cell survival. However, whether Pim kinases participate in innate immune responses is unclear. Here, we show for the first time that Pim1 plays an essential role in the production of interferon (IFN)-β by macrophages after their Toll-like receptor (TLR) pathway is activated by pathogen-associated molecular patter

Pathology and Forensic MedicineMedicine
11
Article|37 citations·2013
Early estrogen-induced gene 1, a novel RANK signaling component, is essential for osteoclastogenesis
Han Kyoung Choi, Hye Ri Kang, Eutteum Jung, Tae Eon Kim, Jingjing Lin, Soo Young Lee
SJR Q1Cell ResearchOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|36 citations·2018
STAC2 negatively regulates osteoclast formation by targeting the RANK signaling complex
Eutteum Jeong, Han Kyoung Choi, Jin Hee Park, Soo Young Lee
SJR Q1Cell Death and Differentiation
Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|36 citations·2017
Saturated fatty acid determination method using paired ion electrospray ionization mass spectrometry coupled with capillary electrophoresis
Ji-Hyun Lee, Sujin Kim, Sul Lee, Sul Lee, Jin‐Kyu Rhee, Soo Young Lee, Soo Young Lee, Yun‐Cheol Na
SJR Q1Analytica Chimica Acta
SpectroscopyChemistry
14
Article|33 citations·2011
Reactive oxygen species regulate M-CSF-induced monocyte/macrophage proliferation through SHP1 oxidation
Han Kyoung Choi, Tae Hee Kim, Gil‐Ja Jhon, Soo Young Lee
SJR Q2Cellular Signalling
ImmunologyImmunology and Microbiology
15
Article|30 citations·2024
5-aminosalicylic acid suppresses osteoarthritis through the OSCAR-PPARγ axis
Jihee Kim, Gina Ryu, J. G. Seo, Miyeon Go, Gyungmin Kim, Sol Yi, Suwon Kim, Hana Lee, June‐Yong Lee, Han Sung Kim, Min‐Chan Park, Dong Hae Shin
SJR Q1Nature CommunicationsOA

Osteoarthritis (OA) is a progressive and irreversible degenerative joint disease that is characterized by cartilage destruction, osteophyte formation, subchondral bone remodeling, and synovitis. Despite affecting millions of patients, effective and safe disease-modifying osteoarthritis drugs are lacking. Here we reveal an unexpected role for the small molecule 5-aminosalicylic acid (5-ASA), which is used as an anti-inflammatory drug in ulcerative colitis. We show that 5-ASA competes with extrace

RheumatologyMedicine

Research Areas

Molecular BiologyRheumatologyOncologySpectroscopyOphthalmologyImmunology

Dive deeper into Soo-Young Lee's research on Nubint

Open this lab's papers in the app to read with AI, summarize, and cite in your writing.