Skip to main content

Soon-Ji Yoo

Kyung Hee University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Soon-Ji Yoo's research lab focuses on the molecular mechanisms of protein quality control, particularly the regulation of proteolytic systems and ubiquitin-dependent pathways in cellular stress responses. The lab investigates ATP-dependent proteases such as HslVU in *E. coli* and explores their catalytic mechanisms and structural functions, with a strong emphasis on how protein degradation maintains proteostasis. Additionally, the lab examines the roles of E3 ubiquitin ligases, such as CHIP and Diap1, in targeting damaged or regulatory proteins for degradation under oxidative stress and in apoptosis regulation. These studies provide insights into fundamental processes linked to aging, cancer, and neurodegenerative diseases.

proteostasisubiquitin-proteasome systemATP-dependent proteasesprotein degradationoxidative stress

Research Overview

Papers
54
Total Citations
4,677
Papers (5y)
9
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
9total
2018
2020
2023
2024
2025
Citations per year (5y)
134total
20182020202320242025

Selected Papers

15
1
Article|375 citations·2002
Hid, Rpr and Grim negatively regulate DIAP1 levels through distinct mechanisms
Soon Ji Yoo, Jun R. Huh, Israel Muro, Hong‐Jeng Yu, Lijuan Wang, Susan L. Wang, R. M. Renny Feldman, Rollie J. Clem, H.‐Arno J. Müller, Bruce A. Hay
SJR Q1Nature Cell Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|122 citations·1996
Purification and Characterization of the Heat Shock Proteins HslV and HslU That Form a New ATP-dependent Protease in
Soon Ji Yoo, Jae Hong Seol, Dong Hun Shin, Markus Rohrwild, Man‐Sik Kang, Keiji Tanaka, Alfred L. Goldberg, Chin Ha Chung
SJR Q1Journal of Biological ChemistryOA

The hslVU operon in Escherichia coli encodes two heat shock proteins, HslV, a 19-kDa protein homologous to β-type subunits of the 20 S proteasomes, and HslU, a 50-kDa protein related to the ATPase ClpX. We have recently shown that HslV and HslU can function together as a novel ATP-dependent protease, the HslVU protease. We have now purified both proteins to apparent homogeneity from extracts of E. coli carrying the hslVU operon on a multicopy plasmid. HslU by itself cleaved ATP, and pure HslV is

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|39 citations·1997
ATP Binding, but Not Its Hydrolysis, Is Required for Assembly and Proteolytic Activity of the HslVU Protease inEscherichia coli
Soon Ji Yoo, Jae Hong Seol, Ihn Sik Seong, Man-Sik Kang, Chin Ha Chung
SJR Q2Biochemical and Biophysical Research Communications
GeneticsBiochemistry, Genetics and Molecular Biology
4
Article|34 citations·1997
Mutagenesis of two N‐terminal Thr and five Ser residues in HslV, the proteolytic component of the ATP‐dependent HslVU protease
Soon Ji Yoo, Yoon Kyung Shim, Ihn Sik Seong, Jae Hong Seol, Man-Sik Kang, Chin Ha Chung
SJR Q1FEBS Letters

HslVU in E. coli is a new type of ATP-dependent protease consisting of two heat shock proteins: the HslU ATPase and the HslV peptidase that has two repeated Thr residues at its N terminus, like certain beta-type subunit of the 20S proteasomes. To gain an insight into the catalytic mechanism of HslV, site-directed mutagenesis was performed to replace each of the Thr residues with Ser or Val and to delete the first or both Thr. Also each of the five internal Ser residues in HslV were replaced with

Cell BiologyBiochemistry, Genetics and Molecular Biology
5
Article|34 citations·2013
CHIP has a protective role against oxidative stress-induced cell death through specific regulation of Endonuclease G
JeongMi Lee, Tae Woong Seo, Jee Hyun Yi, Ki Soon Shin, Soon Ji Yoo
SJR Q1Cell Death and DiseaseOA

Oxidative stress is implicated in carcinogenesis, aging, and neurodegenerative diseases. The E3 ligase C terminus of Hsc-70 interacting protein (CHIP) has a protective role against various stresses by targeting damaged proteins for proteasomal degradation, and thus maintains protein quality control. However, the detailed mechanism by which CHIP protects cells from oxidative stress has not been demonstrated. Here, we show that depletion of CHIP led to elevated Endonuclease G (EndoG) levels and en

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|31 citations·2014
C-terminus of Hsc70-interacting protein regulates profilin1 and breast cancer cell migration
Ye Na Choi, Sun Kyung Lee, Tae Woong Seo, Ji Sun Lee, Soon Ji Yoo
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|16 citations·1998
Effects of the Cys Mutations on Structure and Function of the ATP-dependent HslVU Protease in Escherichia coli
Soon Ji Yoo, Hyun Hee Kim, Dong Hun Shin, Cheol-Soon Lee, Ihn Sik Seong, Jae Hong Seol, Naoki Shimbara, Keiji Tanaka, Chin Ha Chung
SJR Q1Journal of Biological ChemistryOA

To define the role of the Cys residues in the ATP-dependent HslVU protease, mutagenesis was performed to replace either Cys261 or Cys287 in HslU with Val and Cys159 in HslV with Ser or Ala. Whereas HslU/C261V could hydrolyze ATP and support the ATP-dependent proteolytic activity of HslV as well as the wild-type HslU, HslU/C287V could not hydrolyze ATP. Nevertheless, HslU/C287V could support the HslV-mediated proteolysis by forming the HslVU complex in the presence of ATP but not its absence, ind

GeneticsBiochemistry, Genetics and Molecular Biology
8
Article|14 citations·2005
Grim Stimulates Diap1 Poly-Ubiquitination by Binding to UbcD1
Soon Ji Yoo
SJR Q1Molecules and CellsOA

Diap1 is an essential Drosophila cell death regulator that binds to caspases and inhibits their activity. Reaper, Grim and Hid each antagonize Diap1 by binding to its BIR domain, activating the caspases and eventually causing cell death. Reaper and Hid induce cell death in a Ring-dependent manner by stimulating Diap1 auto-ubiquitination and degradation. It was not clear that how Grim causes the ubiquitination and degradation of Diap1 in Grim-dependent cell death. We found that Grim stimulates po

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|12 citations·2013
C-terminus of Hsc70-interacting protein regulates C-terminal binding protein 2 and the expression of its target genes
Ji Sun Lee, Soon Ji Yoo
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|11 citations·2007
Translation Initiation Factor 4E (eIF4E) is Regulated by Cell Death Inhibitor, Diap1
Sun Kyung Lee, Ji Sun Lee, Ki Soon Shin, Soon Ji Yoo
SJR Q1Molecules and CellsOA

Translation initiation factor 4E (eIF4E) is a key regulator of protein synthesis. Abnormal regulation of eIF4E is closely linked to oncogenic transformation. Several regulatory mechanisms affecting eIF4E are discussed, including transcriptional regulation, phosphorylation and binding of an inhibitor protein. However it is not clear how the level of eIF4E protein is regulated under basal conditions. Here we demonstrate that Diap1 (Drosophila Inhibitor of Apoptosis Protein), a cell death inhibitor

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|11 citations·2014
Regulation of fragile X mental retardation 1 protein by C-terminus of Hsc70-interacting protein depends on its phosphorylation status
Ye Na Choi, Dar Heum Jeong, Ji Sun Lee, Soon Ji Yoo
SJR Q2Biochemical and Biophysical Research Communications
GeneticsBiochemistry, Genetics and Molecular Biology
12
Article|11 citations·1996
Poly-L-lysine Activates both Peptide and ATP Hydrolysis by the ATP-Dependent HslVU Protease inEscherichia coli
Soon Ji Yoo, Jae Hong Seol, Man‐Sik Kang, Chin Ha Chung
SJR Q2Biochemical and Biophysical Research Communications
EpidemiologyMedicine
13
Article|9 citations·2018
Ubiquitin-proteasome dependent regulation of Profilin2 (Pfn2) by a cellular inhibitor of apoptotic protein 1 (cIAP1)
Dar Heum Jeong, Ye Na Choi, Tae Woong Seo, Ji Sun Lee, Soon Ji Yoo
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|9 citations·1993
Hydrolysis of the IciA protein, an inhibitor of DNA replication initiation, by protease Do in Escherichia coli
Soon Ji Yoo, Jae Hong Seol, Seung Kyoon Woo, Se Won Suh, Deog Su Hwang, Doo Bong Ha, Chin Ha Chung
SJR Q1FEBS Letters

The 33 kDa IciA protein, an inhibitor of replication initiation of the Escherichia coli chromosome, was found to be specifically cleaved to 27 kDa fragment by protease Do, the htrA gene product. The 27 kDa polypeptide could no longer interact with the oriC region, and therefore the cleavage-site is likely to reside within the N-terminal DNA-binding domain of the IciA protein. In addition, protease Do was found to localize primarily to the cytoplasm although it also could bind to membranes throug

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|7 citations·2017
A novel function of cIAP1 as a mediator of CHIP-driven eIF4E regulation
Tae Woong Seo, Ji Sun Lee, Ye Na Choi, Dar Heum Jeong, Sun Kyung Lee, Soon Ji Yoo
SJR Q1Scientific ReportsOA

eIF4E is an initiator protein in cap-dependent translation. Its overexpression is linked to tumorigenesis in various human cancers, suggesting that the levels of eIF4E must be under tight control in normal cells. Although several eIF4E regulatory mechanisms have been demonstrated, the intracellular mechanisms controlling eIF4E protein levels remain poorly understood. Here, we report that eIF4E is efficiently regulated by dual mechanisms, both involving human inhibitor of apoptosis family protein

Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyGeneticsImmunologyMaterials ChemistryCell BiologyNeurology

Dive deeper into Soon-Ji Yoo's research on Nubint

Open this lab's papers in the app to read with AI, summarize, and cite in your writing.