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Won Do Heo

Korea Advanced Institute of Science and Technology · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Won Do Heo's research lab specializes in cell signaling and membrane dynamics, with a focus on the spatiotemporal regulation of cellular processes through optogenetics, lipid-protein interactions, and real-time imaging of protein dynamics. The lab investigates how signaling molecules, cytoskeletal proteins, and ion channels are localized and regulated at subcellular membranes, particularly through phosphoinositide lipids and calcium signaling. A central theme is the development and application of innovative optical tools—such as light-sensitive proteins and single-molecule imaging techniques—to dissect dynamic cellular events in live cells and animal models with high precision. The lab also explores the roles of calmodulin isoforms and Rho GTPase regulators in plant and animal immune responses and morphogenesis.

optogeneticscalcium signalingmembrane dynamicsprotein-protein interactionslive-cell imaging

Research Overview

Papers
165
Total Citations
11,088
Papers (5y)
46
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
46total
2022
2023
2024
2025
2026
Citations per year (5y)
398total
20222023202420252026

Selected Papers

15
1
Article|780 citations·2006
PI(3,4,5)P 3 and PI(4,5)P 2 Lipids Target Proteins with Polybasic Clusters to the Plasma Membrane
Won Do Heo, Takanari Inoue, Wei Sun Park, Man Lyang Kim, Byung Ouk Park, Thomas J. Wandless, Tobias Meyer
SJR Q1ScienceOA

Many signaling, cytoskeletal, and transport proteins have to be localized to the plasma membrane (PM) in order to carry out their function. We surveyed PM-targeting mechanisms by imaging the subcellular localization of 125 fluorescent protein-conjugated Ras, Rab, Arf, and Rho proteins. Out of 48 proteins that were PM-localized, 37 contained clusters of positively charged amino acids. To test whether these polybasic clusters bind negatively charged phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2

Cell BiologyBiochemistry, Genetics and Molecular Biology
2
Article|276 citations·1999
Involvement of specific calmodulin isoforms in salicylic acid-independent activation of plant disease resistance responses
Won Do Heo, Sang H. Lee, Min Chul Kim, Jong Cheol Kim, Woo Sik Chung, Hyun Jin Chun, Kyoung Joo Lee, Chan Young Park, Hyeong Cheol Park, Ji Young Choi, Moo Je Cho
SJR Q1Proceedings of the National Academy of SciencesOA

The Ca2+ signal is essential for the activation of plant defense responses, but downstream components of the signaling pathway are still poorly defined. Here we demonstrate that specific calmodulin (CaM) isoforms are activated by infection or pathogen-derived elicitors and participate in Ca2+-mediated induction of plant disease resistance responses. Soybean CaM (SCaM)-4 and SCaM-5 genes, which encode for divergent CaM isoforms, were induced within 30 min by a fungal elicitor or pathogen, whereas

Plant ScienceAgricultural and Biological Sciences
3
Article|229 citations·2014
Reversible protein inactivation by optogenetic trapping in cells
Sangkyu Lee, Hye-Rim Park, Taeyoon Kyung, Na Yeon Kim, Sungsoo Kim, Ji-Hoon Kim, Won Do Heo
SJR Q1Nature Methods
BiophysicsBiochemistry, Genetics and Molecular Biology
4
Article|196 citations·2014
Spatiotemporal Control of Fibroblast Growth Factor Receptor Signals by Blue Light
Nury Kim, Jin Man Kim, Minji Lee, Cha Yeon Kim, Ki-Young Chang, Won Do Heo
Chemistry & Biology
Plant ScienceAgricultural and Biological Sciences
5
Article|190 citations·2012
Cooperative Activation of PI3K by Ras and Rho Family Small GTPases
Hee Won Yang, Min‐Gyoung Shin, Sangkyu Lee, Jeong‐Rae Kim, Wei Sun Park, Kwang‐Hyun Cho, Tobias Meyer, Won Do Heo
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|172 citations·2017
Optogenetic protein clustering through fluorescent protein tagging and extension of CRY2
Hyerim Park, Na Yeon Kim, Sangkyu Lee, Nury Kim, Ji-Hoon Kim, Won Do Heo
SJR Q1Nature CommunicationsOA

Protein homo-oligomerization is an important molecular mechanism in many biological processes. Therefore, the ability to control protein homo-oligomerization allows the manipulation and interrogation of numerous cellular events. To achieve this, cryptochrome 2 (CRY2) from Arabidopsis thaliana has been recently utilized for blue light-dependent spatiotemporal control of protein homo-oligomerization. However, limited knowledge on molecular characteristics of CRY2 obscures its widespread applicatio

Cellular and Molecular NeuroscienceNeuroscience
7
Article|164 citations·2015
Optogenetic control of endogenous Ca2+ channels in vivo
Taeyoon Kyung, Sangkyu Lee, Jung Eun Kim, Taesup Cho, Hyerim Park, Yun‐Mi Jeong, Dongkyu Kim, Anna Shin, Sungsoo Kim, Jinhee Baek, Ji-Hoon Kim, Na Yeon Kim
SJR Q1Nature Biotechnology
Cellular and Molecular NeuroscienceNeuroscience
8
Article|154 citations·2014
Light-inducible receptor tyrosine kinases that regulate neurotrophin signalling
Ki-Young Chang, Doyeon Woo, Hyunjin Jung, Sangkyu Lee, Sungsoo Kim, Joungha Won, Taeyoon Kyung, Hyerim Park, Nury Kim, Hee Won Yang, Jae‐Yong Park, Eun Mi Hwang
SJR Q1Nature CommunicationsOA
Cellular and Molecular NeuroscienceNeuroscience
9
Article|124 citations·2019
Optogenetic activation of intracellular antibodies for direct modulation of endogenous proteins
Daseuli Yu, Hansol Lee, Jongryul Hong, Hyunjin Jung, YoungJu Jo, Byung‐Ha Oh, Byung Ouk Park, Won Do Heo
SJR Q1Nature Methods
Cellular and Molecular NeuroscienceNeuroscience
10
Article|119 citations·2021
Label-free multiplexed microtomography of endogenous subcellular dynamics using generalizable deep learning
YoungJu Jo, Hyungjoo Cho, Wei Sun Park, Geon Kim, DongHun Ryu, Young Seo Kim, Moosung Lee, Sangwoo Park, Mahn Jae Lee, Hosung Joo, HangHun Jo, Seongsoo Lee
SJR Q1Nature Cell Biology
BiophysicsBiochemistry, Genetics and Molecular Biology
11
Article|109 citations·2003
Switch-of-Function Mutants Based on Morphology Classification of Ras Superfamily Small GTPases
Won Do Heo, Tobias Meyer
SJR Q1CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|85 citations·2013
Real-time single-molecule co-immunoprecipitation analyses reveal cancer-specific Ras signalling dynamics
Hong-Won Lee, Taeyoon Kyung, Janghyun Yoo, Tackhoon Kim, Chaeuk Chung, Ji Young Ryu, Hanki Lee, Kihyun Park, Sangkyu Lee, Walton D. Jones, Dae‐Sik Lim, Changbong Hyeon
SJR Q1Nature CommunicationsOA

Co-immunoprecipitation (co-IP) has become a standard technique, but its protein-band output provides only static, qualitative information about protein–protein interactions. Here we demonstrate a real-time single-molecule co-IP technique that generates real-time videos of individual protein–protein interactions as they occur in unpurified cell extracts. By analysing single Ras–Raf interactions with a 50-ms time resolution, we have observed transient intermediates of the protein–protein interacti

Cell BiologyBiochemistry, Genetics and Molecular Biology
13
Article|84 citations·2016
Optogenetic oligomerization of Rab GTPases regulates intracellular membrane trafficking
Mai K. Nguyen, Cha Yeon Kim, Jin Man Kim, Byung Ouk Park, Sangkyu Lee, Hyerim Park, Won Do Heo
SJR Q1Nature Chemical Biology
Cellular and Molecular NeuroscienceNeuroscience
14
Article|81 citations·2017
Cell-matrix adhesion and cell-cell adhesion differentially control basal myosin oscillation and Drosophila egg chamber elongation
Xiang Qin, Byung Ouk Park, Jiaying Liu, Bing Chen, Valérie Choesmel-Cadamuro, Karine Belguise, Won Do Heo, Xiaobo Wang
SJR Q1Nature CommunicationsOA

Pulsatile actomyosin contractility, important in tissue morphogenesis, has been studied mainly in apical but less in basal domains. Basal myosin oscillation underlying egg chamber elongation is regulated by both cell-matrix and cell-cell adhesions. However, the mechanism by which these two adhesions govern basal myosin oscillation and tissue elongation is unknown. Here we demonstrate that cell-matrix adhesion positively regulates basal junctional Rho1 activity and medio-basal ROCK and myosin act

Cell BiologyBiochemistry, Genetics and Molecular Biology
15
Article|72 citations·2020
Non-invasive optical control of endogenous Ca2+ channels in awake mice
Sungsoo Kim, Taeyoon Kyung, Jae‐Hee Chung, Nury Kim, Sehoon Keum, Jinsu Lee, Hyerim Park, Ho Min Kim, Sangkyu Lee, Hee‐Sup Shin, Won Do Heo
SJR Q1Nature CommunicationsOA

Abstract Optogenetic approaches for controlling Ca 2+ channels provide powerful means for modulating diverse Ca 2+ -specific biological events in space and time. However, blue light-responsive photoreceptors are, in principle, considered inadequate for deep tissue stimulation unless accompanied by optic fiber insertion. Here, we present an ultra-light-sensitive optogenetic Ca 2+ modulator, named monSTIM1 encompassing engineered cryptochrome2 for manipulating Ca 2+ signaling in the brain of awake

Cellular and Molecular NeuroscienceNeuroscience

Research Areas

Molecular BiologyCellular and Molecular NeuroscienceCell BiologyPlant ScienceBiophysicsEndocrinology

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