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Yoon-E Choi

Korea University · Environmental Science

About the Lab

Professor Yoon-E Choi's research lab focuses on fungal pathogenesis and environmental microbiology, with a strong emphasis on understanding molecular mechanisms underlying fungal virulence, mycotoxin production, and host-pathogen interactions in agriculturally important pathogens such as *Fusarium verticillioides* and *Mycosphaerella graminicola*. The lab investigates key signaling pathways—like the cAMP-PKA and velvet gene regulatory networks—that control development, secondary metabolism, and disease progression in fungi. Additionally, the lab explores sustainable biotechnological solutions for environmental challenges, including the control of harmful algal blooms and the valorization of industrial by-products like crude glycerol through microbial processes. Their work bridges fundamental fungal biology with practical applications in food safety, agriculture, and environmental bioremediation.

fungal pathogenesismycotoxin productionhost-pathogen interactionbioremediationmicrobial biotechnology

Research Overview

Papers
27
Total Citations
753
Papers (5y)
7
Primary Field
Environmental Science

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
7total
2022
2023
2024
2025
2026
Citations per year (5y)
17total
20222023202420252026

Selected Papers

15
1
Article|158 citations·2021
Fe(III) loaded chitosan-biochar composite fibers for the removal of phosphate from water
Kumuduni Niroshika Palansooriya, Sok Kim, Avanthi Deshani Igalavithana, Yohey Hashimoto, Yoon-E Choi, Raj Mukhopadhyay, Binoy Sarkar, Yong Sik Ok
SJR Q1Journal of Hazardous Materials
Industrial and Manufacturing EngineeringEnvironmental Science
2
Article|90 citations·2010
The cAMP Signaling Pathway in Fusarium verticillioides Is Important for Conidiation, Plant Infection, and Stress Responses but Not Fumonisin Production
Yoon-E Choi, Jin‐Rong Xu
SJR Q1Molecular Plant-Microbe InteractionsOA

Fusarium verticillioides is one of the most important fungal pathogens of maize. Mycotoxin, fumonisins produced by this pathogen pose a threat to human and animal health. Because cAMP signaling has been implicated in regulating diverse developmental and infection processes in fungal pathogens, in this study, we aimed to elucidate the function of the cAMP-protein kinase A (PKA) pathway in toxin production and plant infection in F. verticillioides. Targeted deletion mutants were generated for the

Plant ScienceAgricultural and Biological Sciences
3
Article|88 citations·2006
FSR1 Is Essential for Virulence and Female Fertility in Fusarium verticillioides and F. graminearum
Won‐Bo Shim, Uma Shankar Sagaram, Yoon-E Choi, Jinny So, Heather H. Wilkinson, Yin-Won Lee
SJR Q1Molecular Plant-Microbe Interactions

Fusarium verticillioides (teleomorph Gibberella moniliformis) and F. graminearum (teleomorph G. zeae) are well known to cause devastating diseases on cereal crops. Despite their importance, our understanding of the molecular mechanisms involved in these host-pathogen interactions is limited. The FSR1 locus in F. verticillioides was identified by screening REMI mutants for loss of virulence in maize stalk rot inoculation studies. FSR1 encodes an 823-codon open reading frame interrupted by two int

Plant ScienceAgricultural and Biological Sciences
4
Article|75 citations·2009
The CID1 cyclin C-like gene is important for plant infection in Fusarium graminearum
Xiaoying Zhou, Christina M. Heyer, Yoon-E Choi, Rahim Mehrabi, Jin‐Rong Xu
SJR Q2Fungal Genetics and BiologyOA
Plant ScienceAgricultural and Biological Sciences
5
Article|51 citations·2010
MVE1 , Encoding the Velvet Gene Product Homolog in Mycosphaerella graminicola , Is Associated with Aerial Mycelium Formation, Melanin Biosynthesis, Hyphal Swelling, and Light Signaling
Yoon-E Choi, Stephen B. Goodwin
SJR Q1Applied and Environmental MicrobiologyOA

The ascomycete fungus Mycosphaerella graminicola is an important pathogen of wheat that causes Septoria tritici blotch. Despite the serious impact of M. graminicola on wheat production worldwide, knowledge about its molecular biology is limited. The velvet gene, veA, is one of the key regulators of diverse cellular processes, including development and secondary metabolism in many fungi. However, the species analyzed to date are not related to the Dothideomycetes, the largest class of plant-patho

Cell BiologyBiochemistry, Genetics and Molecular Biology
6
Article|48 citations·2016
Ruthenium recovery from acetic acid industrial effluent using chemically stable and high-performance polyethylenimine-coated polysulfone-Escherichia coli biomass composite fibers
Sok Kim, Yoon-E Choi, Yeoung‐Sang Yun
SJR Q1Journal of Hazardous Materials
Water Science and TechnologyEnvironmental Science
7
Article|47 citations·2017
Development of electrochemical biosensor for detection of pathogenic microorganism in Asian dust events
Min-Sang Yoo, Minguk Shin, Younghun Kim, Min Jang, Yoon-E Choi, Si Jae Park, Jonghoon Choi, Jin‐Young Lee, Chulhwan Park
SJR Q1Chemosphere
Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|37 citations·2020
Adsorption Strategy for Removal of Harmful Cyanobacterial Species Microcystis aeruginosa Using Chitosan Fiber
Yun Hwan Park, Sok Kim, Ho Seon Kim, Chulhwan Park, Yoon-E Choi
SJR Q1SustainabilityOA

Microcystis aeruginosa is one of the predominant species responsible for cyanobacterial-harmful algal blooms (Cyano-HABs) in water bodies. Cyano-HABs pose a growing number of serious threats to the environment and public health. Therefore, the demand for developing safe and eco-friendly solutions to control Cyano-HABs is increasing. In the present study, the adsorptive strategy using chitosan was applied to remove M. aeruginosa cells from aqueous phases. Using a simple immobilization process, ch

Environmental ChemistryEnvironmental Science
9
Article|32 citations·2018
Community structures and genomic features of undesirable white colony-forming yeasts on fermented vegetables
Joon Yong Kim, Juseok Kim, In-Tae Cha, Min Young Jung, Hye Seon Song, Yeon Bee Kim, Changsu Lee, Seung-Yeon Kang, Jin‐Woo Bae, Yoon-E Choi, Tae-Woon Kim, Seong Woon Roh
SJR Q2The Journal of Microbiology

White colony-forming yeasts (WCFYs) often appear in fermented foods, depending on the storage method. Despite the ongoing research on fermented foods, the community and genome features of WCFYs have not been well studied. In this study, the community structures of WCFYs on fermented vegetables (kimchi) prepared with various raw materials were investigated using deep sequencing. Only eight operational taxonomic units (OTUs) were detected, indicating that the community structure of WCFYs on kimchi

Food ScienceAgricultural and Biological Sciences
10
Article|30 citations·2018
Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria
Changsu Lee, Min Seo Jeon, Thi-Thao Vo, Chulhwan Park, Jong-Soon Choi, Joseph Sang‐Il Kwon, Seong Woon Roh, Yoon-E Choi
SJR Q2Journal of Applied Phycology
Environmental ChemistryEnvironmental Science
11
Article|28 citations·2019
Improved production of bacterial cellulose from waste glycerol through investigation of inhibitory effects of crude glycerol-derived compounds by Gluconacetobacter xylinus
양호진, 이택, 김중래, 최윤이, 박철환

In this study, bacterial cellulose production from pure and crude glycerol by Gluconacetobacter xylinusKCCM 41431 was achieved under static culture condition. The effect of crude glycerol-derived inhibitorswas investigated (glycerol concentration, pH, and salts concentration). Significant inhibitory effects instatic cultivation were observed in the following conditions: above 40 g/L of initial glycerol concentration,pH 6, or 10 g/L of salts concentration. Especially, inhibition in bacterial cell

12
Article|20 citations·2010
Gene Encoding a c-Type Cyclin in Mycosphaerella graminicola Is Involved in Aerial Mycelium Formation, Filamentous Growth, Hyphal Swelling, Melanin Biosynthesis, Stress Response, and Pathogenicity
Yoon-E Choi, Stephen B. Goodwin
SJR Q1Molecular Plant-Microbe InteractionsOA

Mycosphaerella graminicola is an important wheat pathogen causing Septoria tritici blotch. To date, an efficient strategy to control M. graminicola has not been developed. More significantly, we have a limited understanding of the molecular mechanisms of M. graminicola pathogenicity. In this study, we attempted to characterize an MCC1-encoding c-type cyclin, a gene homologous to FCC1 in Fusarium verticillioides. Four independent MCC1 knock-out mutants were generated via Agrobacterium tumefaciens

Plant ScienceAgricultural and Biological Sciences
13
Article|12 citations·2015
Chemical Genetics Approach Reveals Importance of cAMP and MAP Kinase Signaling to Lipid and Carotenoid Biosynthesis in Microalgae
최윤이, 양지원, 이진규, 김현수, 안준우, 황혜민

In this study, we attempted to understand signaling pathways behind lipid biosynthesis by employing a chemical genetics approach based on small molecule inhibitors. Specific signaling inhibitors of MAP kinase or modulators of cAMP signaling were selected to evaluate the functional roles of each of the key signaling pathways in three different microalgal species: Chlamydomonas reinhardtii, Chlorella vulgaris, and Haematococcus pluvialis. Our results clearly indicate that cAMP signaling pathways a

14
Article|7 citations·2018
Potentiometric titration data on the enhancement of sorption capacity of surface-modified biosorbents: functional groups scanning method
Sok Kim, Chul Woong Cho, Myung-Hee Song, John Kwame Bediako, Yeoung‐Sang Yun, Yoon-E Choi
SJR Q1Clean Technologies and Environmental PolicyOA

In the present study, the relationship between the amount of anionic or cationic binding sites and adsorption capacities of biosorbents is discussed through potentiometric titration and mathematical model equations (proton-binding models). The poly(acrylic) acid-modified biomass (PAAB) and polyethylenimine-modified biomass (PEIB) derived from raw biomass (RB) Corynebacterium glutamicum (C. glutamicum) were used as cationic and anionic binding site-enhanced biosorbents, respectively. To obtain th

Water Science and TechnologyEnvironmental Science
15
Article|6 citations·2025
On-site microfluidic aptasensor for rapid and highly selective detection of microcystin-LR
Jihye Lee, Byeolnim Oh, Jaewon Park, Jee Young Kim, Jino Son, Hyun Soo Kim, Yoon-E Choi, Yoon-E Choi
SJR Q1Talanta
Environmental ChemistryEnvironmental Science

Research Areas

Plant ScienceEnvironmental ChemistryWater Science and TechnologyIndustrial and Manufacturing EngineeringCell BiologyMolecular Biology

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