Nagoya University · Biochemistry, Genetics and Molecular Biology
Professor Seiji Kojima's research lab specializes in the molecular mechanisms of bacterial motility, with a primary focus on the structure and function of flagellar rotary motors. The lab investigates ion-conducting stator complexes—such as MotA/MotB in E. coli and PomA/PomB in Vibrio species—that couple ion gradients (protons or sodium ions) to mechanical rotation. Using structural biology, biochemistry, and mutagenesis, the lab elucidates how these motors generate torque and are anchored to the cell wall via peptidoglycan-binding domains. Their work also explores the roles of auxiliary proteins like MotX and MotY in stator assembly and motor function.
Figures are computed from collected data and may differ slightly.
Torque generation in the Salmonella flagellar motor is coupled to translocation of H(+) ions through the proton-conducting channel of the Mot protein stator complex. The Mot complex is believed to be anchored to the peptidoglycan (PG) layer by the putative peptidoglycan-binding (PGB) domain of MotB. Proton translocation is activated only when the stator is installed into the motor. We report the crystal structure of a C-terminal periplasmic fragment of MotB (MotB(C)) that contains the PGB domain
Bacterial flagella are driven at their base by a rotary motor fueled by the membrane gradient of protons or sodium ions. The stator of the flagellar motor is formed from the membrane proteins MotA and MotB, which function together to conduct ions across the membrane and couple ion flow to rotation. An invariant aspartate residue in MotB (Asp32 in the protein of E. coli) is essential for rotation and appears to have a direct role in proton conduction. A recent study showed that changes at Asp32 i
Vibrio cholerae is a highly motile bacterium which possesses a single polar flagellum as a locomotion organelle. Motility is thought to be an important factor for the virulence of V. cholerae. The genome sequencing project of this organism is in progress, and the genes that are highly homologous to the essential genes of the Na+-driven polar flagellar motor of Vibrio alginolyticus were found in the genome database of V. cholerae. The energy source of its flagellar motor was investigated. We exam
Rotation of the sodium-driven polar flagellum of Vibrio alginolyticus requires four motor proteins: PomA, PomB, MotX, and MotY. PomA and PomB form a sodium-ion channel in the cytoplasmic membrane that functions as a stator complex to couple sodium-ion flux with torque generation. MotX and MotY are components of the T-ring, which is located beneath the P-ring of the polar flagellar basal body and is involved in incorporation of the PomA/PomB complex into the motor. Here, we describe the determina
ABSTRACT The stator proteins PomA and PomB form a complex that couples Na + influx to torque generation in the polar flagellar motor of Vibrio alginolyticus . This stator complex is anchored to an appropriate place around the rotor through a putative peptidoglycan-binding (PGB) domain in the periplasmic region of PomB (PomB C ). To investigate the function of PomB C , a series of N-terminally-truncated and in-frame mutants with deletions between the transmembrane (TM) segment and the PGB domain
In aplastic anemia, predictive markers of response to immunosuppressive therapy have not been well defined. We retrospectively evaluated whether clinical and laboratory findings before treatment could predict response in a pediatric cohort from the multicenter AA-97 study in Japan. Between 1997 and 2006, 312 newly diagnosed children were enrolled and treated with a combination of antithymocyte globulin and cyclosporine. In multivariate analyses, lower white blood cell count was the most signific
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