The University of Osaka · Biochemistry, Genetics and Molecular Biology
Professor Yasushi Hiraoka's research lab specializes in advanced optical microscopy and multispectral imaging techniques to investigate cellular dynamics and chromosomal organization in living cells. The lab focuses on developing and applying high-resolution, three-dimensional imaging systems to study gene localization, chromosome pairing, and codon usage bias in model organisms such as *Drosophila melanogaster* and *Schizosaccharomyces pombe*. A central theme is the integration of computational image analysis with live-cell imaging to understand the spatial and temporal regulation of cellular components at the molecular level. The lab also explores the functional implications of non-coding RNAs in homologous chromosome pairing and gene expression regulation.
Figures are computed from collected data and may differ slightly.
The properties of a charge-coupled device (CCD) and its application to the high-resolution analysis of biological structures by optical microscopy are described. The CCD, with its high resolution, high sensitivity, wide dynamic range, photometric accuracy, and geometric stability, can provide data of such high quality that quantitative analysis on two- and three-dimensional microscopic images is possible. For example, the three-dimensional imaging properties of an epifluorescence microscope have
We have determined the position within the nucleus of homologous sites of the histone gene cluster in Drosophila melanogaster using in situ hybridization and high-resolution, three-dimensional wide field fluorescence microscopy. A 4.8-kb biotinylated probe for the histone gene repeat, located approximately midway along the short arm of chromosome 2, was hybridized to whole-mount embryos in late syncytial and early cellular blastoderm stages. Our results show that the two homologous histone loci
Multispectral imaging technologies have been widely used in fields of astronomy and remote sensing. Interdisciplinary approaches developed in, for example, the National Aeronautics and Space Administration (NASA, USA), the Jet Propulsion Laboratory (JPL, USA), or the Communications Research Laboratory (CRL, Japan) have extended the application areas of these technologies from planetary systems to cellular systems. Here we overview multispectral imaging systems that have been devised for microsco
Find Your Partner Gametes generally have haploid genomes, so that when they fuse during fertilization, they reconstitute a diploid organism. Meiosis is required to make haploid gametes, which involves a reduction division where two homologous chromosomes first pair and are then segregated away from each other. Working in the fission yeast Schizosaccharomyces pombe , Ding et al. (p. 732 ; see the Perspective by Dernburg ) explored how homologous chromosomes recognized each other and found that a
Cellular events are accomplished by the coordinated interactions of cellular components within the three-dimensional context of a cell. Simultaneous observation of multiple components in three dimensions can be essential for understanding such interactions. Toward this end, we have developed a computerized microscope workstation capable of recording three-dimensional images of multiple cellular components in fixed and living cells. All aspects of microscope control, data collection, image proces
Usage of synonymous codons represents a characteristic pattern of preference in each organism. It has been inferred that such bias of codon usage has evolved as a result of adaptation for efficient synthesis of proteins. Here we examined synonymous codon usage in genes of the fission yeast Schizosaccharomyces pombe, and compared codon usage bias with expression levels of the gene. In this organism, synonymous codon usage bias was correlated with expression levels of the gene; the bias was most o
The spatial and temporal dynamics of diploid chromosome organization, microtubule arrangement, and the state of the nuclear envelope have been analyzed in syncytial blastoderm embryos of Drosophila melanogaster during the transition from prophase to metaphase, by three-dimensional optical sectioning microscopy. Time-lapse, three-dimensional data recorded in living embryos revealed that congression of chromosomes (the process whereby chromosomes move to form the metaphase plate) at prometaphase o
Open papers in the app to read, cite, and organize with AI.