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Cheol-Hwan Lee

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Cheol-Hwan Lee's research lab focuses on epigenetic regulation, particularly the molecular mechanisms of Polycomb Repressive Complex 2 (PRC2) in chromatin modification and gene silencing. The lab investigates how histone modifications—especially H3K27 methylation—govern development and disease, with a strong emphasis on oncogenic mutations like H3K27M in pediatric brain tumors. They also explore the roles of epigenetic enzymes such as HDAC3 and DNA replication machinery components like Dna2 and Vts1 in genome stability and post-transcriptional regulation. Their work integrates quantitative proteomics, structural biology, and functional genomics to dissect epigenetic and DNA metabolic pathways in health and disease.

epigeneticsPRC2histone modificationneurodevelopmental disordersDNA replication

Research Overview

Papers
67
Total Citations
2,271
Papers (5y)
22
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
22total
2022
2023
2024
2025
2026
Citations per year (5y)
212total
20222023202420252026

Selected Papers

15
1
Article|288 citations·2018
Capturing the Onset of PRC2-Mediated Repressive Domain Formation
Ozgur Oksuz, Varun Narendra, Chul‐Hwan Lee, Nicolas Descostes, Gary LeRoy, Ramya Raviram, Lili M. Blumenberg, Kelly R. Karch, Pedro P. Rocha, Benjamin A. García, Jane A. Skok, Danny Reinberg
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|195 citations·2018
Multiple modes of PRC2 inhibition elicit global chromatin alterations in H3K27M pediatric glioma
James M. Stafford, Chul‐Hwan Lee, Philipp Voigt, Nicolas Descostes, Ricardo Saldaña-Meyer, Jia-Ray Yu, Gary LeRoy, Ozgur Oksuz, Jessica R. Chapman, Fernando Suarez, Aram S. Modrek, N. Sumru Bayın
SJR Q1Science AdvancesOA

A methionine substitution at lysine-27 on histone H3 variants (H3K27M) characterizes ~80% of diffuse intrinsic pontine gliomas (DIPG) and inhibits polycomb repressive complex 2 (PRC2) in a dominant-negative fashion. Yet, the mechanisms for this inhibition and abnormal epigenomic landscape have not been resolved. Using quantitative proteomics, we discovered that robust PRC2 inhibition requires levels of H3K27M greatly exceeding those of PRC2, seen in DIPG. While PRC2 inhibition requires interacti

GeneticsMedicine
3
Article|139 citations·2018
Distinct Stimulatory Mechanisms Regulate the Catalytic Activity of Polycomb Repressive Complex 2
Chul‐Hwan Lee, Marlene Holder, Daniel Grau, Ricardo Saldaña-Meyer, Jia-Ray Yu, Rais A. Ganai, Jenny Zhang, Miao Wang, Gary LeRoy, Marc‐Werner Dobenecker, Danny Reinberg, Karim‐Jean Armache
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|138 citations·2018
Allosteric Activation Dictates PRC2 Activity Independent of Its Recruitment to Chromatin
Chul‐Hwan Lee, Jia-Ray Yu, Sunil Kumar, Ying Jin, Gary LeRoy, Natarajan V. Bhanu, Syuzo Kaneko, Benjamin A. Garcia, Andrew D. Hamilton, Danny Reinberg
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|119 citations·2019
Automethylation of PRC2 promotes H3K27 methylation and is impaired in H3K27M pediatric glioma
Chul‐Hwan Lee, Jia-Ray Yu, Jeffrey Granat, Ricardo Saldaña-Meyer, Joshua Andrade, Gary LeRoy, Ying Jin, Peder J. Lund, James M. Stafford, Benjamin A. García, Beatrix Ueberheide, Danny Reinberg
SJR Q1Genes & DevelopmentOA

The histone methyltransferase activity of PRC2 is central to the formation of H3K27me3-decorated facultative heterochromatin and gene silencing. In addition, PRC2 has been shown to automethylate its core subunits, EZH1/EZH2 and SUZ12. Here, we identify the lysine residues at which EZH1/EZH2 are automethylated with EZH2-K510 and EZH2-K514 being the major such sites in vivo. Automethylated EZH2/PRC2 exhibits a higher level of histone methyltransferase activity and is required for attaining proper

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|67 citations·2013
Chromatin Remodelers Fine-Tune H3K36me-Directed Deacetylation of Neighbor Nucleosomes by Rpd3S
Chul‐Hwan Lee, Jun Wu, Bing Li
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Review|54 citations·2022
The role of EZH1 and EZH2 in development and cancer
Soo Hyun Lee, Yingying Li, Hanbyeol Kim, Seounghyun Eum, Kyumin Park, Chul‐Hwan Lee
SJR Q1BMB ReportsOA

Polycomb Repressive Complex 2 (PRC2) exhibits key roles in mammalian development through its temporospatial repression of gene expression. EZH1 or EZH2 is the catalytic subunit of PRC2 that mediates the mono-, di- and tri-methylation of histone H3 lysine 27 (H3K27me1/2/3), H3K27me2/me3 being a hallmark of facultative heterochromatin. PRC2 is a chromatinmodifying enzyme that is recruited to a limited number of "nucleation sites", spreads H3K27 methylation and fosters chromatin compaction. EZH1 an

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|14 citations·2013
The N-terminal 45-kDa Domain of Dna2 Endonuclease/Helicase Targets the Enzyme to Secondary Structure DNA
Chul‐Hwan Lee, Miju Lee, Hyo-Jin Kang, Do‐Hyung Kim, Young‐Hoon Kang, Seongho Bae, Yeon‐Soo Seo
SJR Q1Journal of Biological ChemistryOA

The removal of initiating primers from the 5'-ends of each Okazaki fragment, required for the generation of contiguous daughter strands, can be catalyzed by the combined action of DNA polymerase δ and Fen1. When the flaps generated by displacement of DNA synthesis activity of polymerase δ become long enough to bind replication protein A or form hairpin structures, the helicase/endonuclease enzyme, Dna2, becomes critical because of its ability to remove replication protein A-coated or secondary s

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|12 citations·2009
Involvement of Vts1, a structure-specific RNA-binding protein, in Okazaki fragment processing in yeast
Chul‐Hwan Lee, Yong-Keol Shin, Thi Thu Huong Phung, Jae Seok Bae, Young‐Hoon Kang, Tuan Anh Nguyen, Jeong‐Hoon Kim, Do‐Hyung Kim, Min‐Jung Kang, Seongho Bae, Yeon‐Soo Seo
SJR Q1Nucleic Acids ResearchOA

The non-essential VTS1 gene of Saccharomyces cerevisiae is highly conserved in eukaryotes and encodes a sequence- and structure-specific RNA-binding protein. The Vts1 protein has been implicated in post-transcriptional regulation of a specific set of mRNAs that contains its-binding site at their 3'-untranslated region. In this study, we identified VTS1 as a multi-copy suppressor of dna2-K1080E, a lethal mutant allele of DNA2 that lacks DNA helicase activity. The suppression was allele-specific,

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|9 citations·2024
De novo missense variants in HDAC3 leading to epigenetic machinery dysfunction are associated with a variable neurodevelopmental disorder
Jihoon G. Yoon, Seong-Kyun Lim, Hoseok Seo, Seungbok Lee, Jaeso Cho, Soo Yeon Kim, Hyun Yong Koh, Annapurna Poduri, Vijayalakshmi Salem Ramakumaran, Pradeep Vasudevan, Martijn J. de Groot, Jung Min Ko
SJR Q1The American Journal of Human GeneticsOA

Histone deacetylase 3 (HDAC3) is a crucial epigenetic modulator essential for various developmental and physiological functions. Although its dysfunction is increasingly recognized in abnormal phenotypes, to our knowledge, there have been no established reports of human diseases directly linked to HDAC3 dysfunction. Using trio exome sequencing and extensive phenotypic analysis, we correlated heterozygous de novo variants in HDAC3 with a neurodevelopmental disorder having variable clinical presen

GeneticsBiochemistry, Genetics and Molecular Biology
11
Review|7 citations·2025
The role of ASXL1, SRSF2, and EZH2 mutations in chromatin dysregulation of myelodysplastic neoplasia and acute myeloid leukemia
H.A. Yu, Junshik Hong, Dong‐Yeop Shin, Chul‐Hwan Lee
SJR Q1LeukemiaOA

Mutations in chromatin-regulating genes play a critical role in the pathogenesis of myelodysplastic neoplasia (MDS) and acute myeloid leukemia (AML), as genetic mutations affecting chromatin structure and function are key drivers of these hematologic malignancies. Central to the discussion are key emerging genes such as ASXL1, SRSF2, and EZH2, which are recognized as adverse prognostic markers. Mutations in these genes, coupled with subsequent alterations in epigenetic mechanisms, disrupt normal

HematologyMedicine
12
Preprint|6 citations·2018
Automethylation of PRC2 fine-tunes its catalytic activity on chromatin
Chul‐Hwan Lee, Jeffrey Granat, Jia-Ray Yu, Gary LeRoy, James M. Stafford, Danny Reinberg
bioRxiv (Cold Spring Harbor Laboratory)OA

Abstract The catalytic activity of PRC2 is central to maintain transcriptional repression by H3K27me3-decorated facultative heterochromatin in mammalian cells. To date, multiple factors have been reported to regulate PRC2 activity. Here, we demonstrate that PRC2 methylates itself on EZH1/2 and SUZ12 subunits, with EZH1/2-K514 being the major automethylation site in cells. The functional studies of automethylation on EZH2 indicate automethylation as a self-activating mechanism for PRC2 in the abs

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Preprint|3 citations·2017
Allosteric activation dictates PRC2 activity independent of its recruitment to chromatin
Chul‐Hwan Lee, Jia-Ray Yu, Sunil Kumar, Ying Jin, Syuzo Kaneko, Andrew D. Hamilton, Danny Reinberg
bioRxiv (Cold Spring Harbor Laboratory)OA

SUMMARY PRC2 is a therapeutic target for several types of cancers currently undergoing clinical trials. Its activity is regulated by a positive feedback loop whereby its terminal enzymatic product, H3K27me3, is specifically recognized and bound by an aromatic cage present in its EED subunit. The ensuing allosteric activation of the complex stimulates H3K27me3 deposition on chromatin. Here, we report a step-wise feedback mechanism entailing key residues within distinctive interfacing motifs of EZ

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|2 citations·2022
The role of EZH1 and EZH2 in development and cancer
Chul‐Hwan Lee, Yingying Li, Hanbyeol Kim, Seounghyun Eum, Kyumin Park, Soo Hyun Lee
SJR Q1BMB ReportsOA

Polycomb Repressive Complex 2 (PRC2) exhibits key roles in mammalian development through its temporospatial repression of gene expression. EZH1 or EZH2 is the catalytic subunit of PRC2 that mediates the mono-, di-and tri-methylation of histone H3 lysine 27 (H3K27me1/2/3), H3K27me3 being a hallmark of facultative heterochromatin. PRC2 is a chromatin-modifying enzyme that is recruited to a limited number of "nucleation sites", spreads H3K27 methylation and fosters chromatin compaction. EZH1 and EZ

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|2 citations·2022
Techniques to Study Automethylation of Histone Methyltransferases and its Functional Impact
Luis Popoca, Chul‐Hwan Lee
SJR Q4Methods in molecular biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyOncologyGeneticsPharmacologyHematologyMetals and Alloys

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