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Chunghun Lim

Korea Advanced Institute of Science and Technology · Neuroscience

About the Lab

Professor Chunghun Lim's research lab focuses on the molecular mechanisms of viral persistence and host-virus interactions, particularly in Kaposi's sarcoma-associated herpesvirus (KSHV). The lab investigates how viral proteins such as latency-associated nuclear antigen (LANA) manipulate host cellular machinery to maintain viral episomes, regulate transcription, and evade immune surveillance. A central theme is the identification of host factors and viral proteins that interact to control viral latency and reactivation, with a strong emphasis on transcriptional and translational regulation. The lab also explores conserved regulatory mechanisms in circadian rhythms, revealing evolutionary insights into sleep-regulatory components across metazoans.

viral latencyLANA proteintranscriptional regulationhost-virus interactionepisome maintenance

Research Overview

Papers
63
Total Citations
2,359
Papers (5y)
13
Primary Field
Neuroscience

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
13total
2022
2023
2024
2025
2026
Citations per year (5y)
78total
20222023202420252026

Selected Papers

15
1
Article|164 citations·2007
clockwork orange Encodes a Transcriptional Repressor Important for Circadian-Clock Amplitude in Drosophila
Chunghun Lim, Brian Y. Chung, Jena L. Pitman, Jermaine J. McGill, Suraj Pradhan, Jongbin Lee, Kevin Keegan, Joonho Choe, Ravi Allada
SJR Q1Current BiologyOA
Endocrine and Autonomic SystemsNeuroscience
2
Review|144 citations·2013
Emerging roles for post-transcriptional regulation in circadian clocks
Chunghun Lim, Ravi Allada
SJR Q1Nature Neuroscience
Endocrine and Autonomic SystemsNeuroscience
3
Article|140 citations·2013
ATAXIN-2 Activates PERIOD Translation to Sustain Circadian Rhythms in Drosophila
Chunghun Lim, Ravi Allada
SJR Q1Science

Evidence for transcriptional feedback in circadian timekeeping is abundant, yet little is known about the mechanisms underlying translational control. We found that ATAXIN-2 (ATX2), an RNA-associated protein involved in neurodegenerative disease, is a translational activator of the rate-limiting clock component PERIOD (PER) in Drosophila. ATX2 specifically interacted with TWENTY-FOUR (TYF), an activator of PER translation. RNA interference-mediated depletion of Atx2 or the expression of a mutant

Endocrine and Autonomic SystemsNeuroscience
4
Article|116 citations·2000
Latency-associated nuclear antigen of Kaposi’s sarcoma-associated herpesvirus (human herpesvirus-8) binds ATF4/CREB2 and inhibits its transcriptional activation activity
Chunghun Lim, Hekwang Sohn, Yousang Gwack, Joonho Choe
SJR Q2Journal of General Virology

Latency-associated nuclear antigen (LANA), encoded by ORF 73 of Kaposi's sarcoma-associated herpesvirus (KSHV; human herpesvirus-8), may play an important role in the persistence of the viral episome by tethering it to host chromosomes during mitosis. It also has been suggested from its amino acid sequence features that LANA may have transcription-regulatory activity. Here, it is reported that LANA interacts with activating transcription factor (ATF) 4/cAMP response element-binding protein (CREB

OncologyMedicine
5
Article|110 citations·2001
The Transcriptional Activity of cAMP Response Element-binding Protein-binding Protein Is Modulated by the Latency Associated Nuclear Antigen of Kaposi's Sarcoma-associated Herpesvirus
Chunghun Lim, Yousang Gwack, Seungmin Hwang, Se-Ho Kim, Joonho Choe
SJR Q1Journal of Biological ChemistryOA

A multifunctional transcription co-activator, cAMP response element-binding protein-binding protein (CBP)interacts with a number of cellular factors and participates in cell growth, transformation, and development. It is also targeted by many viral proteins for their transcriptional activity or for the regulation of cellular processes. Here, we report that the C/H3 region of CBP is targeted by the latency associated nuclear antigen (LANA) of Kaposi's sarcoma-associated herpesvirus (KSHV). LANA i

OncologyMedicine
6
Article|109 citations·2002
Functional Dissection of Latency-Associated Nuclear Antigen 1 of Kaposi's Sarcoma-Associated Herpesvirus Involved in Latent DNA Replication and Transcription of Terminal Repeats of the Viral Genome
Chunghun Lim, Hekwang Sohn, Daeyoup Lee, Yousang Gwack, Joonho Choe
SJR Q1Journal of VirologyOA

Latency-associated nuclear antigen 1 (LANA1) of Kaposi's sarcoma-associated herpesvirus (KSHV) is implicated in the maintenance of the viral genome during latent infection. LANA1 colocalizes with KSHV episomes on the host chromosome and mediates their maintenance by attaching these viral structures to host chromosomes. Data from long-term selection of drug resistance in cells conferred by plasmids containing the terminal repeat (TR) sequence of KSHV revealed that KSHV TRs and LANA1 act as cis an

OncologyMedicine
7
Article|106 citations·2020
A sleep-like state in Hydra unravels conserved sleep mechanisms during the evolutionary development of the central nervous system
Hiroyuki J. Kanaya, Sungeon Park, Ji-hyung Kim, Junko Kusumi, Sofian Krenenou, Etsuko Sawatari, Aya Sato, Jongbin Lee, Hyunwoo Bang, Yoshitaka Kobayakawa, Chunghun Lim, Taichi Q. Itoh
SJR Q1Science AdvancesOA

, suggesting the evolutionary switch of their sleep-regulatory functions. Thus, sleep-relevant physiology and sleep-regulatory components may have already been acquired at molecular levels in a brain-less metazoan phylum and reprogrammed accordingly.

PaleontologyEarth and Planetary Sciences
8
Article|82 citations·2011
The novel gene twenty-four defines a critical translational step in the Drosophila clock
Chunghun Lim, Jongbin Lee, Changtaek Choi, Valerie L. Kilman, Juwon Kim, Seong‐Mi Park, Sung Key Jang, Ravi Allada, Joonho Choe
SJR Q1Nature
Endocrine and Autonomic SystemsNeuroscience
9
Article|77 citations·2003
Latency-associated Nuclear Antigen of Kaposi's Sarcoma-associated Herpesvirus Functionally Interacts with Heterochromatin Protein 1
Chunghun Lim, Daeyoup Lee, Taegun Seo, Changtaek Choi, Joonho Choe
SJR Q1Journal of Biological ChemistryOA

Latency-associated nuclear antigen (LANA) of Kaposi's sarcoma-associated herpesvirus plays an important role in maintenance of the viral genome during latent infection. LANA additionally participates in the transcriptional regulation of several viral and cellular promoters. When tethered to constitutively active promoters, the protein exhibits transcriptional repressor activity. In this report, we further characterized cell type-, promoter-, and domain-specific transcriptional repression by LANA

OncologyMedicine
10
Article|72 citations·2017
LSM12 and ME31B/DDX6 Define Distinct Modes of Posttranscriptional Regulation by ATAXIN-2 Protein Complex in Drosophila Circadian Pacemaker Neurons
Jongbo Lee, Eunseok Yoo, Hoyeon Lee, Keunhee Park, Jin‐Hoe Hur, Chunghun Lim
SJR Q1Molecular CellOA
Endocrine and Autonomic SystemsNeuroscience
11
Article|54 citations·2007
Functional Role of CREB-Binding Protein in the Circadian Clock System of Drosophila melanogaster
Chunghun Lim, Jongbin Lee, Changtaek Choi, Juwon Kim, Eunjin Doh, Joonho Choe
SJR Q2Molecular and Cellular BiologyOA

Rhythmic histone acetylation underlies the oscillating expression of clock genes in the mammalian circadian clock system. Cellular factors that contain histone acetyltransferase and histone deacetylase activity have been implicated in these processes by direct interactions with clock genes, but their functional relevance remains to be assessed by use of appropriate animal models. Here, using transgenic fly models, we show that CREB-binding protein (CBP) participates in the transcriptional regula

Endocrine and Autonomic SystemsNeuroscience
12
Article|48 citations·2019
Sleep-promoting effects of threonine link amino acid metabolism in Drosophila neuron to GABAergic control of sleep drive
Yoonhee Ki, Chunghun Lim
SJR Q1eLifeOA

Emerging evidence indicates the role of amino acid metabolism in sleep regulation. Here we demonstrate sleep-promoting effects of dietary threonine (SPET) in Drosophila. Dietary threonine markedly increased daily sleep amount and decreased the latency to sleep onset in a dose-dependent manner. High levels of synaptic GABA or pharmacological activation of metabotropic GABA receptors (GABAB-R) suppressed SPET. By contrast, synaptic blockade of GABAergic neurons or transgenic depletion of GABAB-R i

Cellular and Molecular NeuroscienceNeuroscience
13
Article|34 citations·2021
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD
Jumin Park, Jongbo Lee, Ji-hyung Kim, Jongbin Lee, Heeju Park, Chunghun Lim
SJR Q1Nucleic Acids ResearchOA

C9ORF72-derived dipeptide repeat proteins have emerged as the pathogenic cause of neurodegeneration in amyotrophic lateral sclerosis and frontotemporal dementia (C9-ALS/FTD). However, the mechanisms underlying their expression are not fully understood. Here, we demonstrate that ZNF598, the rate-limiting factor for ribosome-associated quality control (RQC), co-translationally titrates the expression of C9ORF72-derived poly(GR) protein. A Drosophila genetic screen identified key RQC factors as pot

NeurologyMedicine
14
Review|34 citations·2018
Ataxin‐2: A versatile posttranscriptional regulator and its implication in neural function
Jongbo Lee, Minjong Kim, Taichi Q. Itoh, Chunghun Lim
SJR Q1Wiley Interdisciplinary Reviews - RNA

Ataxin-2 (ATXN2) is a eukaryotic RNA-binding protein that is conserved from yeast to human. Genetic expansion of a poly-glutamine tract in human ATXN2 has been implicated in several neurodegenerative diseases, likely acting through gain-of-function effects. Emerging evidence, however, suggests that ATXN2 plays more direct roles in neural function via specific molecular and cellular pathways. ATXN2 and its associated protein complex control distinct steps in posttranscriptional gene expression, i

Cellular and Molecular NeuroscienceNeuroscience
15
Article|28 citations·2020
The voltage-gated potassium channel Shaker promotes sleep via thermosensitive GABA transmission
Ji-hyung Kim, Yoonhee Ki, Hoyeon Lee, Moon Seong Hur, Bukyung Baik, Jin‐Hoe Hur, Dougu Nam, Chunghun Lim
SJR Q1Communications BiologyOA

Genes and neural circuits coordinately regulate animal sleep. However, it remains elusive how these endogenous factors shape sleep upon environmental changes. Here, we demonstrate that Shaker (Sh)-expressing GABAergic neurons projecting onto dorsal fan-shaped body (dFSB) regulate temperature-adaptive sleep behaviors in Drosophila. Loss of Sh function suppressed sleep at low temperature whereas light and high temperature cooperatively gated Sh effects on sleep. Sh depletion in GABAergic neurons p

Cellular and Molecular NeuroscienceNeuroscience

Research Areas

Endocrine and Autonomic SystemsOncologyMolecular BiologyCellular and Molecular NeurosciencePulmonary and Respiratory MedicineCell Biology

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