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Do Hyung Kim

Yonsei University · Medicine

About the Lab

Professor Do Hyung Kim's research lab focuses on the molecular mechanisms underlying autophagy regulation, with a central emphasis on the ULK1 kinase complex and its interplay with mTORC1 signaling. The lab investigates how nutrient and energy stress signals are transduced through key kinases like ULK1, AMPK, and mTORC1 to control autophagosome formation and cellular homeostasis. A major research direction involves dissecting the dynamic phosphorylation events—such as ATG14 and BECN1 phosphorylation by ULK1—that regulate the VPS34 complex and autophagy initiation. The lab also explores the role of ATG8-family proteins in fine-tuning ULK1 activity, revealing distinct regulatory functions of LC3 and GABARAP subfamilies in autophagy progression.

autophagyULK1 kinasemTORC1 signalingATG14 phosphorylationATG8 subfamily regulation

Research Overview

Papers
440
Total Citations
33,921
Papers (5y)
55
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
55total
2021
2022
2023
2024
2025
Citations per year (5y)
3,478total
20212022202320242025

Selected Papers

15
1
Article|2,972 citations·2002
mTOR Interacts with Raptor to Form a Nutrient-Sensitive Complex that Signals to the Cell Growth Machinery
Do‐Hyung Kim, Dos D. Sarbassov, Siraj M. Ali, Jessie E. King, Robert Latek, Hediye Erdjument‐Bromage, Paul Tempst, David M. Sabatini
SJR Q1CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|1,167 citations·2007
Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40
Emilie Vander Haar, Seong-il Lee, Sricharan Bandhakavi, Timothy J. Griffin, Do‐Hyung Kim
SJR Q1Nature Cell Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|951 citations·2003
GβL, a Positive Regulator of the Rapamycin-Sensitive Pathway Required for the Nutrient-Sensitive Interaction between Raptor and mTOR
Do‐Hyung Kim, Dos D. Sarbassov, Siraj M. Ali, Robert Latek, Kalyani Guntur, Hediye Erdjument‐Bromage, Paul Tempst, David M. Sabatini
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|345 citations·2016
The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14
Ji‐Man Park, Chang Hwa Jung, Minchul Seo, Neil Otto, Douglas Grunwald, Kwan‐Hyun Kim, Branden S. Moriarity, Young Mi Kim, Colby G. Starker, Richard Seonghun Nho, Daniel F. Voytas, Do‐Hyung Kim
SJR Q1AutophagyOA

ULK1 (unc-51 like autophagy activating kinase 1), the key mediator of MTORC1 signaling to autophagy, regulates early stages of autophagosome formation in response to starvation or MTORC1 inhibition. How ULK1 regulates the autophagy induction process remains elusive. Here, we identify that ATG13, a binding partner of ULK1, mediates interaction of ULK1 with the ATG14-containing PIK3C3/VPS34 complex, the key machinery for initiation of autophagosome formation. The interaction enables ULK1 to phosph

EpidemiologyMedicine
5
Article|278 citations·2005
Effects of Zn/Y ratio on microstructure and mechanical properties of Mg-Zn-Y alloys
Ju‐Yeon Lee, Do‐Hyung Kim, Do‐Hyung Kim, Hyun-Kyu Lim, Do Hyang Kim, Do Hyang Kim
SJR Q2Materials Letters
BiomaterialsMaterials Science
6
Article|267 citations·2014
mTORC1 Phosphorylates UVRAG to Negatively Regulate Autophagosome and Endosome Maturation
Young Mi Kim, Chang Hwa Jung, Minchul Seo, Eun Kyoung Kim, Ji‐Man Park, Sun Sik Bae, Do‐Hyung Kim
SJR Q1Molecular CellOA
EpidemiologyMedicine
7
Article|251 citations·2023
Redefining the role of AMPK in autophagy and the energy stress response
Ji-Man Park, Da-Hye Lee, Do‐Hyung Kim
SJR Q1Nature CommunicationsOA

Autophagy maintains cellular homeostasis during low energy states. According to the current understanding, glucose-depleted cells induce autophagy through AMPK, the primary energy-sensing kinase, to acquire energy for survival. However, contrary to the prevailing concept, our study demonstrates that AMPK inhibits ULK1, the kinase responsible for autophagy initiation, thereby suppressing autophagy. We found that glucose starvation suppresses amino acid starvation-induced stimulation of ULK1-Atg14

EpidemiologyMedicine
8
Article|198 citations·2007
PRR5, a Novel Component of mTOR Complex 2, Regulates Platelet-derived Growth Factor Receptor β Expression and Signaling
So-Yon Woo, Donghwan Kim, Chang-Bong Jun, Young Mi Kim, Emilie Vander Haar, Seong-il Lee, James W. Hegg, Sricharan Bandhakavi, Timothy J. Griffin, Do‐Hyung Kim, Do‐Hyung Kim, Do‐Hyung Kim
SJR Q1Journal of Biological ChemistryOA

The protein kinase mammalian target of rapamycin (mTOR) plays an important role in the coordinate regulation of cellular responses to nutritional and growth factor conditions. mTOR achieves these roles through interacting with raptor and rictor to form two distinct protein complexes, mTORC1 and mTORC2. Previous studies have been focused on mTORC1 to elucidate the central roles of the complex in mediating nutritional and growth factor signals to the protein synthesis machinery. Functions of mTORC

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|171 citations·2011
ULK1 inhibits the kinase activity of mTORC1 and cell proliferation
Chang Hwa Jung, Minchul Seo, Neil Otto, Do‐Hyung Kim
SJR Q1AutophagyOA

ULK1 (Unc51-like kinase, hATG1) is a Ser/Thr kinase that plays a key role in inducing autophagy in response to starvation. ULK1 is phosphorylated and negatively regulated by the mammalian target of rapamycin complex 1 (mTORC1). Previous studies have shown that ULK1 is not only a downstream effector of mTORC1 but also a negative regulator of mTORC1 signaling. ( 1-3) Here, we investigated how ULK1 regulates mTORC1 signaling, and found that ULK1 inhibits the kinase activity of mTORC1 and cell proli

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|166 citations·2018
ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction
Ji‐Man Park, Minchul Seo, Chang Hwa Jung, Douglas Grunwald, Matthew D. Stone, Neil Otto, Erik A. Toso, Yeseul Ahn, Michael Kyba, Timothy J. Griffin, LeeAnn Higgins, Do‐Hyung Kim
SJR Q1AutophagyOA

ULK1 (unc51-like autophagy activating kinase 1) is a serine/threonine kinase that plays a key role in regulating macroautophagy/autophagy induction in response to amino acid starvation. Despite the recent progress in understanding ULK1 functions, the molecular mechanism by which ULK1 regulates the induction of autophagy remains elusive. In this study, we determined that ULK1 phosphorylates Ser30 of BECN1 (Beclin 1) in association with ATG14 (autophagy-related 14) but not with UVRAG (UV radiation

EpidemiologyMedicine
11
Review|135 citations·2004
Raptor and mTOR: Subunits of a Nutrient-Sensitive Complex
Do‐Hyung Kim, David M. Sabatini
Current topics in microbiology and immunology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|117 citations·2019
GABARAPs and LC3s have opposite roles in regulating ULK1 for autophagy induction
Douglas Grunwald, Neil Otto, Ji‐Man Park, Daihyun Song, Do‐Hyung Kim
SJR Q1AutophagyOA

ULK1 (unc-51 like autophagy activating kinase 1) is the key mediator of MTORC1 signaling to macroautophagy/autophagy. ULK1 functions as a protein complex by interacting with ATG13, RB1CC1/FIP200, and ATG101. How the ULK1 complex is regulated to trigger autophagy induction remains unclear. In this study, we have determined roles of Atg8-family proteins (ATG8s) in regulating ULK1 activity and autophagy. Using human cells depleted of each subfamily of ATG8, we found that the GABARAP subfamily posit

EpidemiologyMedicine
13
Article|115 citations·2020
Reproducible Large-Scale Isolation of Exosomes from Adipose Tissue-Derived Mesenchymal Stem/Stromal Cells and Their Application in Acute Kidney Injury
Jun Ho Lee, Dae Hyun Ha, Hyeon-Kyu Go, Jinkwon Youn, Hyun-keun Kim, Richard C. Jin, Randy B. Miller, Do‐Hyung Kim, Byong Seung Cho, Yong Weon Yi
SJR Q1International Journal of Molecular SciencesOA

Acute kidney injury (AKI) is a fatal medical episode caused by sudden kidney damage or failure, leading to the death of patients within a few hours or days. Previous studies demonstrated that exosomes derived from various mesenchymal stem/stromal cells (MSC-exosomes) have positive effects on renal injuries in multiple experimental animal models of kidney diseases including AKI. However, the mass production of exosomes is a challenge not only in preclinical studies with large animals but also for

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|94 citations·2013
Distinct functions ofUlk1andUlk2in the regulation of lipid metabolism in adipocytes
Seung‐Hyun Ro, Chang Hwa Jung, Wendy Hahn, Xin Xu, Young Mi Kim, Young Sung Yun, Ji‐Man Park, Kwan‐Hyun Kim, Minchul Seo, Tae Youl Ha, Edgar A. Arriaga, David Bernlohr
SJR Q1AutophagyOA

ULK1 (unc-51 like kinase 1) is a serine/threonine protein kinase that plays a key role in regulating the induction of autophagy. Recent studies using autophagy-defective mouse models, such as atg5- or atg7-deficient mice, revealed an important function of autophagy in adipocyte differentiation. Suppression of adipogenesis in autophagy-defective conditions has made it difficult to study the roles of autophagy in metabolism of differentiated adipocytes. In this study, we established autophagy defe

EpidemiologyMedicine
15
Article|88 citations·2012
SH3BP4 Is a Negative Regulator of Amino Acid-Rag GTPase-mTORC1 Signaling
Young Mi Kim, Matthew D. Stone, Tae Hyun Hwang, Yeon‐Gil Kim, Jane R. Dunlevy, Timothy J. Griffin, Do‐Hyung Kim
SJR Q1Molecular CellOA
EpidemiologyMedicine

Research Areas

Molecular BiologyMaterials ChemistryEpidemiologyPhysiologyBiomaterialsPlant Science

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