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Dokyun Kim

Yonsei University · Medicine

About the Lab

Professor Dokyun Kim's research lab specializes in antimicrobial resistance (AMR) surveillance, with a focus on the epidemiology, molecular mechanisms, and clinical impacts of multidrug-resistant pathogens such as *Escherichia coli*, *Klebsiella pneumoniae*, *Pseudomonas aeruginosa*, and *Acinetobacter* spp. The lab conducts national surveillance through systems like Kor-GLASS and KARMS, emphasizing antimicrobial susceptibility testing, AMR genotyping, and strain characterization to inform public health policies and treatment guidelines. A key research direction involves understanding the clinical significance of resistant phenotypes, including carbapenemase-producing organisms and atypical resistance patterns like ASPR in *Enterococcus faecalis*.

antimicrobial resistancesurveillance systemscarbapenemase-producing organismsbloodstream infectionspathogen genotyping

Research Overview

Papers
141
Total Citations
1,907
Papers (5y)
55
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
55total
2022
2023
2024
2025
2026
Citations per year (5y)
378total
20222023202420252026

Selected Papers

15
1
Article|101 citations·2017
Increasing Resistance to Extended-Spectrum Cephalosporins, Fluoroquinolone, and Carbapenem in Gram-Negative Bacilli and the Emergence of Carbapenem Non-Susceptibility in Klebsiella pneumoniae: Analysis of Korean Antimicrobial Resistance Monitoring System (KARMS) Data From 2013 to 2015
Dokyun Kim, Ji Young Ahn, Chae Hoon Lee, Sook Jin Jang, Hyukmin Lee, Dongeun Yong, Seok Hoon Jeong, Kyungwon Lee
SJR Q2Annals of Laboratory MedicineOA

Between 2013 and 2015, the resistance rates of E. coli to third- and fourth-generation cephalosporins increased continuously, while carbapenem-susceptibility gradually decreased, particularly in K. pneumoniae. The prevalence of carbapenem-resistant P. aeruginosa and A. baumannii increased significantly; therefore, few treatment options remain for these resistant strains.

Molecular MedicineBiochemistry, Genetics and Molecular Biology
2
Article|82 citations·2018
Antimicrobial resistance and virulence factors of Klebsiella pneumoniae affecting 30 day mortality in patients with bloodstream infection
Dokyun Kim, Byeol Yi Park, Min Hyuk Choi, Eun-Jeong Yoon, Hyukmin Lee, Kwang Jun Lee, Yoon Soo Park, Jong Hee Shin, Young Uh, Kyeong Seob Shin, Jeong Hwan Shin, Young Ah Kim
SJR Q1Journal of Antimicrobial ChemotherapyOA

Despite the reported virulence of hypermucoviscous KP strains, they were associated with good prognoses in KP BSI patients. Importantly, carriage of the pks gene cluster, which is responsible for the synthesis of colibactin, was a relevant marker of early mortality.

Molecular MedicineBiochemistry, Genetics and Molecular Biology
3
Article|70 citations·2022
Major Bloodstream Infection-Causing Bacterial Pathogens and Their Antimicrobial Resistance in South Korea, 2017–2019: Phase I Report From Kor-GLASS
Dokyun Kim, Eun-Jeong Yoon, Jun Sung Hong, Min Hyuk Choi, Hyun Soo Kim, Young Ree Kim, Young Ah Kim, Young Uh, Kyeong Seob Shin, Jeong Hwan Shin, Jeong Su Park, Kyoung Un Park
SJR Q1Frontiers in MicrobiologyOA

To monitor national antimicrobial resistance (AMR), the Korea Global AMR Surveillance System (Kor-GLASS) was established. This study analyzed bloodstream infection (BSI) cases from Kor-GLASS phase I from January 2017 to December 2019. Nine non-duplicated Kor-GLASS target pathogens, including Staphylococcus aureus , Enterococcus faecalis , Enterococcus faecium , Streptococcus pneumoniae , Escherichia coli , Klebsiella pneumoniae , Pseudomonas aeruginosa , Acinetobacter spp., and Salmonella spp.,

Clinical BiochemistryBiochemistry, Genetics and Molecular Biology
4
Article|41 citations·2017
Increasing Resistance to Extended-Spectrum Cephalosporins, Fluoroquinolone, and Carbapenem in Gram-Negative Bacilli and the Emergence of Carbapenem Non-Susceptibility in Klebsiella pneumoniae: Analysis of Korean Antimicrobial Resistance Monitoring System (KARMS) Data From 2013 to 2015
김도균, 안지영, 이채훈, 장숙진, 이혁민, 용동은, 정석훈, 이경원

Background: National surveillance of antimicrobial resistance becomes more important for the control of antimicrobial resistance and determination of treatment guidelines. We analyzed Korean Antimicrobial Resistance Monitoring System (KARMS) data collected from 2013 to 2015. Methods: Of the KARMS participants, 16 secondary or tertiary hospitals consecutively reported antimicrobial resistance rates from 2013 to 2015. Data from duplicate isolates and institutions with fewer than 20 isolates were e

5
Article|29 citations·2015
Xpert CARBA-R Assay for the Detection of Carbapenemase-Producing Organisms in Intensive Care Unit Patients of a Korean Tertiary Care Hospital
Dokyun Kim, Hyoung Sun Kim, Naina Adren Pinto, Jongsoo Jeon, Roshan D’Souza, Myung Sook Kim, Jun Yong Choi, Dongeun Yong, Seok Hoon Jeong, Kyungwon Lee
SJR Q2Annals of Laboratory MedicineOA

Carbapenemase-producing organisms (CPO) are rapidly disseminating worldwide, and their presence in tertiary care hospitals poses a significant threat to the management of nosocomial infections. There is a need to control CPO, especially in intensive care unit (ICU) patients, because these organisms are resistant to most β-lactam antibiotics and are easily transmitted. At present, the identification of CPO is time-consuming; hence, this study focused on the use of the Xpert CARBA-R assay (Cepheid

Molecular MedicineBiochemistry, Genetics and Molecular Biology
6
Article|28 citations·2019
Prospective Observational Study of the Clinical Prognoses of Patients with Bloodstream Infections Caused by Ampicillin-Susceptible but Penicillin-Resistant Enterococcus faecalis
Dokyun Kim, Hyukmin Lee, Eun-Jeong Yoon, Jun Sung Hong, Jong Hee Shin, Young Uh, Kyeong Seob Shin, Jeong Hwan Shin, Young Ah Kim, Yoon Soo Park, Seok Hoon Jeong
SJR Q1Antimicrobial Agents and ChemotherapyOA

The purpose of this study was to evaluate the clinical impacts of ampicillin-susceptible but penicillin-resistant (ASPR) phenotypes of Enterococcus faecalis on clinical outcomes in patients with bloodstream infection (BSI). A total of 295 patients with an E. faecalis BSI from six sentinel hospitals during a 2-year period (from May 2016 to April 2018) were enrolled in this study.

Infectious DiseasesMedicine
7
Article|26 citations·2019
Evaluation of the BD Phoenix M50 Automated Microbiology System for Antimicrobial Susceptibility Testing with Clinical Isolates in Korea
Jun Sung Hong, Dokyun Kim, Da Young Kang, Byeol Yi Park, Sunmi Yang, Eun-Jung Yoon, Hyukmin Lee, Seok Hoon Jeong
SJR Q2Microbial Drug ResistanceOA

The objectives of this study were to evaluate the performance of the BD Phoenix™ M50 system with two antimicrobial susceptibility testing (AST) panels against clinical isolates in South Korea and the accuracy of determining carbapenem and colistin susceptibility compared with reference methods. A total of 825 nonduplicated clinical isolates were included in this study. Bacterial identification was performed using Bruker Biotyper and 16S rDNA sequencing. Antimicrobial susceptibilities were tested

Clinical BiochemistryBiochemistry, Genetics and Molecular Biology
8
Article|25 citations·2021
Performance Evaluation of the Newly Developed In Vitro Rapid Diagnostic Test for Detecting OXA-48-Like, KPC-, NDM-, VIM- and IMP-Type Carbapenemases: The RESIST-5 O.K.N.V.I. Multiplex Lateral Flow Assay
Junsung Hong, Dayoung Kang, Dokyun Kim
SJR Q1AntibioticsOA

The objective of this study was to evaluate the performance of the RESIST-5 O.K.N.V.I. assay for identifying these five common domestic carbapenemases among a large number of clinical isolates in South Korea. A total of 268 non-duplicated clinical isolates of gram-negative bacilli were included in this study as follows: 258 carbapenemase-producing (CP) strains (OXA-48-like, KPC, NDM, VIM, IMP, GES, OXA-23 and two or more carbapenemase producers) and 10 non-CP carbapenem-resistant Enterobacterale

Molecular MedicineBiochemistry, Genetics and Molecular Biology
9
Article|22 citations·2023
Development and validation of artificial intelligence models to predict urinary tract infections and secondary bloodstream infections in adult patients
Min Hyuk Choi, Dokyun Kim, Yongjung Park, Seok Hoon Jeong
SJR Q1Journal of Infection and Public HealthOA

BACKGROUND: Traditional culture methods are time-consuming, making it difficult to utilize the results in the early stage of urinary tract infection (UTI) management, and automated urinalyses alone show insufficient performance for diagnosing UTIs. Several models have been proposed to predict urine culture positivity based on urinalysis. However, most of them have not been externally validated or consisted solely of urinalysis data obtained using one specific commercial analyzer. METHODS: A tota

EpidemiologyMedicine
10
Article|21 citations·2019
Toxic Shock Syndrome Toxin 1-Producing Methicillin-Resistant Staphylococcus aureus of Clonal Complex 5, the New York/Japan Epidemic Clone, Causing a High Early-Mortality Rate in Patients with Bloodstream Infections
Dokyun Kim, Jun Sung Hong, Eun-Jeong Yoon, Hyukmin Lee, Young Ah Kim, Kyeong Seob Shin, Jeong Hwan Shin, Young Uh, Jong Hee Shin, Yoon Soo Park, Seok Hoon Jeong
SJR Q1Antimicrobial Agents and ChemotherapyOA

This study was performed to evaluate the clinical impacts of putative risk factors in patients with Staphylococcus aureus bloodstream infections (BSIs) through a prospective, multicenter, observational study. All 567 patients with S. aureus BSIs that occurred during a 1-year period in six general hospitals were included in this study. Host- and pathogen-related variables were investigated to determine risk factors for the early mortality of patients with S. aureus BSIs.

Infectious DiseasesMedicine
11
Article|17 citations·2019
Analytical and clinical performance of newly developed immunoassay for detecting thyroid-stimulating immunoglobulin, the Immulite TSI assay
Jin Ju Kim, Soon-Ho Jeong, Byungkwang Kim, Dokyun Kim, Seok Hoon Jeong
SJR Q3Scandinavian Journal of Clinical and Laboratory InvestigationOA

Graves' disease (GD) is caused by autoantibodies against the thyrotropin receptor (TRAb), and among the three types of TRAbs, only the stimulating type (TSI) is known to be associated with GD. In this study, we evaluated the analytical performance of a new fully automated chemiluminescent TSI immunoassay, namely, the Immulite TSI assay, and compared the diagnostic efficacy of the assay with the Elecsys Anti-TSH receptor (TSHR) assay. Precision was evaluated using two levels of quality control re

Endocrinology, Diabetes and MetabolismMedicine
12
Article|12 citations·2022
Current status of multidrug-resistant bacteria
Dokyun Kim, Seok Hoon Jeong
SJR Q4Journal of Korean Medical AssociationOA

Background: The dissemination of multidrug-resistant (MDR) pathogen is of major public health concern as it leads to increased mortality rate, length of hospital stays, and medical expenses.Current Concepts: Korean Government enacted an Infectious Disease Control and Prevention Act in 2009, and 6 MDR bacteria including methicillin-resistant Staphylococcus aureus, vancomycin-resistant S. aureus (VRSA), vancomycin-resistant enterococci, multidrug-resistant Pseudomonas aeruginosa, multidrug-resista

Molecular MedicineBiochemistry, Genetics and Molecular Biology
13
letter|12 citations·2016
Two non-otic cases of POM-1 metallo-β-lactamase-producing Pseudomonas otitidis infection: Necrotizing fasciitis and pan-peritonitis
Dokyun Kim, Sung Kuk Hong, Young Hee Seo, Myung Sook Kim, Hyun Soo Kim, Dongeun Yong, Seok Hoon Jeong, Kyungwon Lee, Yunsop Chong
SJR Q2Journal of Global Antimicrobial ResistanceOA
Health, Toxicology and MutagenesisEnvironmental Science
14
Article|12 citations·2016
Xpert CARBA-R Assay for the Detection of Carbapenemase-Producing Organisms in Intensive Care Unit Patients of a Korean Tertiary Care Hospital
김도균, 김형선, Naina Pinto, 전종수, Roshan D’Souza, 김명숙, 최준용, 용동은, 정석훈, 이경원

Carbapenemase-producing organisms (CPO) are rapidly disseminating worldwide, and their presence in tertiary care hospitals poses a significant threat to the management of nosocomial infections. There is a need to control CPO, especially in intensive care unit (ICU) patients, because these organisms are resistant to most β-lactam antibiotics and are easily transmitted. At present, the identification of CPO is time-consuming; hence, this study focused on the use of the Xpert CARBA-R assay (Cepheid

15
Article|11 citations·2015
Therapeutic Plasma Exchange Using the Spectra Optia Cell Separator Compared With the COBE Spectra
Dokyun Kim, Sinyoung Kim, Seok Hoon Jeong, Hyun Ok Kim, Hyung Jik Kim
SJR Q2Annals of Laboratory MedicineOA

Compared with the CSP, the SPO was associated with an improved PRE and a shorter procedure time to exchange one plasma volume. Our results in KT patients show that the SPO is superior to the CSP in TPE procedures.

TransplantationMedicine

Research Areas

Molecular MedicineInfectious DiseasesClinical BiochemistryEpidemiologyMolecular BiologyBiomedical Engineering

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