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Ha-jun Song

Yonsei University · Earth and Planetary Sciences

About the Lab

Professor Ha-jun Song's research lab specializes in physical oceanography and marine biogeochemistry, focusing on the dynamics of mesoscale ocean eddies, air-sea interactions, and their impacts on carbon cycling and ecosystem productivity. The lab employs high-resolution numerical models, satellite observations, and data assimilation techniques to investigate how climate variability—such as El Niño-Southern Oscillation—shapes oceanic habitats and biogeochemical processes. A central theme is understanding the role of oceanic mesoscale variability in modulating carbon fluxes, phytoplankton dynamics, and vertical ocean circulation. The lab also develops advanced data assimilation methods, such as enhanced ensemble Kalman filters, to improve ocean state estimation under model and observational uncertainties.

mesoscale eddiescarbon cyclingdata assimilationair-sea interactionbiogeochemical modeling

Research Overview

Papers
67
Total Citations
1,110
Papers (5y)
29
Primary Field
Earth and Planetary Sciences

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
29total
2022
2023
2024
2025
2026
Citations per year (5y)
62total
20222023202420252026

Selected Papers

15
1
Article|50 citations·2012
Application of a data‐assimilation model to variability of Pacific sardine spawning and survivor habitats with ENSO in the California Current System
Hajoon Song, Arthur J. Miller, Sam McClatchie, Edward D. Weber, Karen Nieto, David M. Checkley
SJR Q1Journal of Geophysical Research AtmospheresOA

The Pacific sardine ( Sardinops sagax ) showed significant differences in spawning habitat area, spawning habitat quality and availability of survivor habitat as the Pacific Ocean went through the La Niña state in April 2002 to a weak El Niño in April 2003. During another El Niño/Southern Oscillation transition period in 2006–2007 when the El Niño state retreated and the La Niña returned, a similar pattern in spawning habitat quality was seen. The coupling between the atmospheric forcing, the ph

Global and Planetary ChangeEnvironmental Science
3
Article|43 citations·2011
Changes in upwelling and its water sources in the California Current System driven by different wind forcing
Hajoon Song, Arthur J. Miller, Bruce D. Cornuelle, Emanuele Di Lorenzo
SJR Q2Dynamics of Atmospheres and Oceans
OceanographyEarth and Planetary Sciences
4
Article|43 citations·2018
Seasonal Variation in the Correlation Between Anomalies of Sea Level and Chlorophyll in the Antarctic Circumpolar Current
Hajoon Song, Matthew C. Long, Peter Gaube, Ivy Frenger, John Marshall, Dennis J. McGillicuddy
SJR Q1Geophysical Research LettersOA

Abstract The Antarctic Circumpolar Current has highly energetic mesoscale phenomena, but their impacts on phytoplankton biomass, productivity, and biogeochemical cycling are not understood well. We analyze satellite observations and an eddy‐rich ocean model to show that they drive chlorophyll anomalies of opposite sign in winter versus summer. In winter, deeper mixed layers in positive sea surface height (SSH) anomalies reduce light availability, leading to anomalously low chlorophyll concentrat

OceanographyEarth and Planetary Sciences
5
Article|37 citations·2012
Incremental four-dimensional variational data assimilation of positive-definite oceanic variables using a logarithm transformation
Hajoon Song, Christopher A. Edwards, Andrew M. Moore, Jérôme Fiechter
SJR Q1Ocean Modelling
Atmospheric ScienceEarth and Planetary Sciences
6
Article|35 citations·2016
Source waters for the highly productive Patagonian shelf in the southwestern Atlantic
Hajoon Song, John Marshall, Michael J. Follows, Stephanie Dutkiewicz, Gaël Forget
SJR Q1Journal of Marine Systems
OceanographyEarth and Planetary Sciences
7
Article|31 citations·2016
Mesoscale modulation of air‐sea CO2 flux in Drake Passage
Hajoon Song, John Marshall, David R. Munro, Stephanie Dutkiewicz, Colm Sweeney, Dennis J. McGillicuddy, Ute Hausmann
SJR Q1Journal of Geophysical Research OceansOA

Abstract We investigate the role of mesoscale eddies in modulating air‐sea CO 2 flux and associated biogeochemical fields in Drake Passage using in situ observations and an eddy‐resolving numerical model. Both observations and model show a negative correlation between temperature and partial pressure of CO 2 ( p CO 2 ) anomalies at the sea surface in austral summer, indicating that warm/cold anticyclonic/cyclonic eddies take up more/less CO 2 . In austral winter, in contrast, relationships are r

OceanographyEarth and Planetary Sciences
8
Article|28 citations·2020
Impact of Current‐Wind Interaction on Vertical Processes in the Southern Ocean
Hajoon Song, John Marshall, Dennis J. McGillicuddy, Hyodae Seo
SJR Q1Journal of Geophysical Research OceansOA

Abstract Momentum input from westerly winds blowing over the Southern Ocean can be modulated by mesoscale surface currents and result in changes in large‐scale ocean circulation. Here, using an eddy‐resolving 1/20 degree ocean model configured near Drake Passage, we evaluate the impact of current‐wind interaction on vertical processes. We find a reduction in momentum input from the wind, reduced eddy kinetic energy, and a modification of Ekman pumping rates. Wind stress curl resulting from curre

OceanographyEarth and Planetary Sciences
9
Article|26 citations·2010
An Adaptive Approach to Mitigate Background Covariance Limitations in the Ensemble Kalman Filter
Hajoon Song, Ibrahim Hoteit, Bruce D. Cornuelle, Aneesh C. Subramanian
SJR Q1Monthly Weather ReviewOA

Abstract A new approach is proposed to address the background covariance limitations arising from undersampled ensembles and unaccounted model errors in the ensemble Kalman filter (EnKF). The method enhances the representativeness of the EnKF ensemble by augmenting it with new members chosen adaptively to add missing information that prevents the EnKF from fully fitting the data to the ensemble. The vectors to be added are obtained by back projecting the residuals of the observation misfits from

Atmospheric ScienceEarth and Planetary Sciences
10
Article|26 citations·2016
Data assimilation in a coupled physical–biogeochemical model of the California Current System using an incremental lognormal 4-dimensional variational approach: Part 1—Model formulation and biological data assimilation twin experiments
Hajoon Song, Christopher A. Edwards, Andrew M. Moore, Jérôme Fiechter
SJR Q1Ocean ModellingOA
OceanographyEarth and Planetary Sciences
11
Article|25 citations·2021
Water Mass Transformation and Overturning Circulation in the Arabian Gulf
Maryam R. Al-Shehhi, Hajoon Song, Jeffery R. Scott, John Marshall
SJR Q1Journal of Physical OceanographyOA

Abstract We diagnose the ocean’s residual overturning circulation of the Arabian Gulf in a high-resolution model and interpret it in terms of water-mass transformation processes mediated by air–sea buoyancy fluxes and interior mixing. We attempt to rationalize the complex three-dimensional flow in terms of the superposition of a zonal (roughly along axis) and meridional (transverse) overturning pattern. Rates of overturning and the seasonal cycle of air–sea fluxes sustaining them are quantified

OceanographyEarth and Planetary Sciences
12
Article|23 citations·2016
Data assimilation in a coupled physical-biogeochemical model of the California Current System using an incremental lognormal 4-dimensional variational approach: Part 2—Joint physical and biological data assimilation twin experiments
Hajoon Song, Christopher A. Edwards, Andrew M. Moore, Jérôme Fiechter
SJR Q1Ocean ModellingOA
OceanographyEarth and Planetary Sciences
13
Article|16 citations·2019
Impact of Near‐Inertial Waves on Vertical Mixing and Air‐Sea CO2 Fluxes in the Southern Ocean
Hajoon Song, John Marshall, Jean‐Michel Campin, Dennis J. McGillicuddy
SJR Q1Journal of Geophysical Research OceansOA

Abstract We report the significant impact of near‐inertial waves (NIWs) on vertical mixing and air‐sea carbon dioxide (CO 2 ) fluxes in the Southern Ocean using a biogeochemical model coupled to an eddy‐rich ocean circulation model. The effects of high‐frequency processes are quantified by comparing the fully coupled solution (ONLINE) to two offline simulations based on 5‐day‐averaged output of the ONLINE simulation: one that uses vertical mixing archived from the ONLINE model (CTRL) and another

OceanographyEarth and Planetary Sciences
14
Article|14 citations·2013
An Adjoint-Based Adaptive Ensemble Kalman Filter
Hajoon Song, Ibrahim Hoteit, Bruce D. Cornuelle, Xiaodong Luo, Aneesh C. Subramanian
SJR Q1Monthly Weather ReviewOA

Abstract A new hybrid ensemble Kalman filter/four-dimensional variational data assimilation (EnKF/4D-VAR) approach is introduced to mitigate background covariance limitations in the EnKF. The work is based on the adaptive EnKF (AEnKF) method, which bears a strong resemblance to the hybrid EnKF/three-dimensional variational data assimilation (3D-VAR) method. In the AEnKF, the representativeness of the EnKF ensemble is regularly enhanced with new members generated after back projection of the EnKF

Atmospheric ScienceEarth and Planetary Sciences
15
Article|14 citations·2015
Anomalous chlorofluorocarbon uptake by mesoscale eddies in the Drake Passage region
Hajoon Song, John Marshall, Peter Gaube, Dennis J. McGillicuddy
SJR Q1Journal of Geophysical Research OceansOA

Abstract The role of mesoscale eddies in the uptake of anthropogenic chlorofluorocarbon‐11 (CFC‐11) gas is investigated with a 1/20° eddy‐resolving numerical ocean model of a region of the Southern Ocean. With a relatively fast air‐sea equilibrium time scale (about a month), the air‐sea CFC‐11 flux quickly responds to the changes in the mixed layer CFC‐11 partial pressure ( p CFC‐11). At the mesoscale, significant correlations are observed between p CFC‐11 anomaly, anomalies in sea surface tempe

OceanographyEarth and Planetary Sciences

Research Areas

OceanographyGlobal and Planetary ChangeAtmospheric ScienceEnvironmental ChemistryWater Science and Technology

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