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Hak-Jung Kim

Korea University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Hak-Jung Kim's research lab specializes in natural product biosynthesis, with a focus on complex polyketide-derived macrolides such as spinosyn A and siderophores like acinetobactin. The lab integrates chemical synthesis, enzymology, and molecular biology to unravel the intricate biosynthetic pathways of these bioactive molecules, particularly emphasizing post-PKS modifications and enzyme-catalyzed reactions. A key research direction involves the development of chemoenzymatic strategies for the efficient synthesis of structurally complex natural products, while also exploring novel targeted protein degradation technologies as therapeutic tools. The lab also investigates virulence factors in pathogenic bacteria, especially iron acquisition systems in *Acinetobacter baumannii*, to support the discovery of new antimicrobial strategies.

natural product biosynthesispolyketide synthesissiderophorestargeted protein degradationchemoenzymatic synthesis

Research Overview

Papers
68
Total Citations
1,988
Papers (5y)
15
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
15total
2021
2023
2024
2025
2026
Citations per year (5y)
187total
20212023202420252026

Selected Papers

15
1
Article|317 citations·2011
Enzyme-catalysed [4+2] cycloaddition is a key step in the biosynthesis of spinosyn A
Hak Joong Kim, Mark W. Ruszczycky, Sei-hyun Choi, Yung-nan Liu, Hung‐wen Liu
SJR Q1Nature
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Review|90 citations·2024
Targeted protein degradation directly engaging lysosomes or proteasomes
Jiseong Kim, Insuk Byun, Do Young Kim, Hyunhi Joh, Hak Joong Kim, Min Jae Lee
SJR Q1Chemical Society ReviewsOA

Targeted protein degradation (TPD) has been established as a viable alternative to attenuate the function of a specific protein of interest in both biological and clinical contexts. The unique TPD mode-of-action has allowed previously undruggable proteins to become feasible targets, expanding the landscape of "druggable" properties and "privileged" target proteins. As TPD continues to evolve, a range of innovative strategies, which do not depend on recruiting E3 ubiquitin ligases as in proteolys

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|72 citations·2007
The Biosynthesis of Spinosyn in Saccharopolyspora spinosa: Synthesis of the Cross-Bridging Precursor and Identification of the Function of SpnJ
Hak Joong Kim, Rongson Pongdee, Qingquan Wu, Lin Hong, Hung‐wen Liu
SJR Q1Journal of the American Chemical SocietyOA

Spinosyns are glycosylated polyketide-derived macrolides possessing a perhydro-as-indacene core that is presumably formed via a series of intramolecular cross-bridging reactions. The unusual structure of the spinosyn aglycone suggests an intriguing biosynthetic pathway for its formation, which is expected to be initiated by the oxidation of the 15-OH group of the mature polyketide precursor and may involve a Diels-Alder-type [4 + 2] cycloaddition reaction. Three possible routes, which differ in

PharmacologyMedicine
4
Review|65 citations·2012
Current developments and challenges in the search for a naturally selected Diels-Alderase
Hak Joong Kim, Mark W. Ruszczycky, Hung‐wen Liu
SJR Q1Current Opinion in Chemical Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|57 citations·2010
Biosynthesis of Spinosyn in Saccharopolyspora spinosa: Synthesis of Permethylated Rhamnose and Characterization of the Functions of SpnH, SpnI, and SpnK
Hak Joong Kim, Jess A. White-Phillip, Yasushi Ogasawara, Nara Shin, Eta A. Isiorho, Hung‐wen Liu
SJR Q1Journal of the American Chemical SocietyOA

Spinosyn A is a polyketide-derived macrolide produced by Saccharopolyspora spinosa and is an active ingredient in several commercial insecticides. It is glycosylated by a tri-O-methylated rhamnose at C-9 and a forosamine at C-17. Previous studies indicated that the rhamnose methyltransferases are encoded by the spnH, spnI, and spnK genes. To verify the functions of these methyltransferases and to study how they are coordinated to achieve the desired level of methylation of rhamnose, we studied t

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|43 citations·2014
Chemoenzymatic Synthesis of Spinosyn A
Hak Joong Kim, Seihyun Choi, Byungsun Jeon, Nam‐Ho Kim, Rongson Pongdee, Qingquan Wu, Hung‐wen Liu
SJR Q1Angewandte Chemie International EditionOA

Following the biosynthesis of polyketide backbones by polyketide synthases (PKSs), post-PKS modifications result in a significantly elevated level of structural complexity that renders the chemical synthesis of these natural products challenging. We report herein a total synthesis of the widely used polyketide insecticide spinosyn A by exploiting the prowess of both chemical and enzymatic methods. As more polyketide biosynthetic pathways are characterized, this chemoenzymatic approach is expecte

PharmacologyMedicine
7
Article|34 citations·2017
Key Structural Elements for Cellular Uptake of Acinetobactin, a Major Siderophore of Acinetobacter baumannii
Woon Song, Dawa Jeong, Jimin Kim, Min Wook Lee, Man Hwan Oh, Hak Joong Kim
SJR Q1Organic Letters

Acinetobactin is a major siderophore utilized by the human pathogen Acinetobacter baumannii. The rapid acquisition of drug resistance by A. baumannii has garnered concern globally. Herein, acinetobactin and systematically generated analogues were prepared and characterized; the binding and cellular delivery of Fe(III) by the analogues were evaluated. This investigation not only led to the clarification of the physiologically relevant acinetobactin structure but also revealed several key structur

Molecular MedicineBiochemistry, Genetics and Molecular Biology
8
Review|30 citations·2019
Current biochemical understanding regarding the metabolism of acinetobactin, the major siderophore of the human pathogen Acinetobacter baumannii, and outlook for discovery of novel anti-infectious agents based thereon
Woon Song, Hak Joong Kim
SJR Q1Natural Product Reports

Covering: 1994 to 2019Owing to the rapid increase in nosocomial infections by antibiotic-resistant Acinetobacter baumannii and the paucity of effective treatment options for such infections, interest in the virulence factors involved in its successful dissemination and propagation in the human host have escalated in recent years. Acinetobacin, a siderophore of A. baumannii, is responsible for iron acquisition under nutritional depravation and has been shown to be one of the key virulence factors

Molecular MedicineBiochemistry, Genetics and Molecular Biology
9
Article|20 citations·2021
Distinctive Roles of Two Acinetobactin Isomers in Challenging Host Nutritional Immunity
Mingi Kim, Do Young Kim, Woon Song, So Eun Park, Simone Harrison, Walter Chazin, Man Hwan Oh, Hak Joong Kim
SJR Q1mBioOA

Acinetobacter baumannii has acquired antibiotic resistance at an alarming rate, and it is becoming a serious threat to society, particularly due to the paucity of effective treatment options. Acinetobactin is a siderophore of Acinetobacter baumannii, responsible for active iron supply, and it serves as a key virulence factor to counter host nutritional immunity during infection. While two acinetobactin isomers were identified, their distinctive roles for successful infection of Acinetobacter bau

EndocrinologyBiochemistry, Genetics and Molecular Biology
10
Article|18 citations·2018
Synthesis and Characterization of Anguibactin To Reveal Its Competence To Function as a Thermally Stable Surrogate Siderophore for a Gram-Negative Pathogen, Acinetobacter baumannii
Haeun Lee, Woon Song, Minju Kim, Min Wook Lee, Soojeung Kim, Ye Song Park, Kyungwon Kwak, Man Hwan Oh, Hak Joong Kim
SJR Q1Organic Letters

Total synthesis of anguibactin was accomplished for the first time, and the following biochemical characterizations allowed for the determination of its Fe(III) binding mode as well as the demonstration of its iron delivery capability for Acinetobacter baumannii. These properties, in addition to the thermal stability over acinetobactin, render anguibactin as a competent surrogate siderophore that can be useful for the future development of a siderophore-based antibiotic delivery system against A

Molecular MedicineBiochemistry, Genetics and Molecular Biology
11
Article|17 citations·2023
Cytoplasmic Delivery of an Antibiotic, Trimethoprim, with a Simple Bidentate Catechol Analog as a Siderophore Mimetic
Do Young Kim, Suyeon Yeom, Jimin Park, Heeyeong Lee, Hak Joong Kim
SJR Q1ACS Infectious Diseases

Concerns about antibiotic-resistant Gram-negative pathogens are escalating, and accordingly siderophore-based intracellular antibiotic delivery is attracting more attention as an effective means to overcome these infections. Despite the successful clinical translation of this strategy, the delivery potential of siderophores has been limited to periplasm targeting, and this has appreciably restricted the repertoire of applicable antibiotics. To overcome this shortcoming of the current technology,

Molecular MedicineBiochemistry, Genetics and Molecular Biology
12
Article|16 citations·2020
Total Syntheses of Fimsbactin A and B and Their Stereoisomers to Probe the Stereoselectivity of the Fimsbactin Uptake Machinery in Acinetobacter baumannii
Soojeung Kim, Haeun Lee, Woon Song, Hak Joong Kim
SJR Q1Organic Letters

The stereoselective synthesis of fimsbactin A, a siderophore of the human pathogen <i>Acinetobacter baumannii</i>, was established. Based on this synthetic route, various fimsbactin stereoisomeric analogues were generated and tested for their iron delivery activity for <i>A. baumannii</i>. This investigation revealed that the fimsbactin uptake machinery in this bacterium was indeed highly stereoselective in substrate recognition.

Molecular MedicineBiochemistry, Genetics and Molecular Biology
13
Article|13 citations·2021
Function of Fimsbactin B as an Acinetobacter-Selective Antibiotic Delivery Vehicle
Do Young Kim, Hak Joong Kim
SJR Q1Organic Letters

The ability of fimsbactin B, a natural siderophore of <i>Acinetobacter baumannii</i>, to function as an antibiotic delivery vehicle was investigated by synthesizing three structurally diversified fimsbactin B-cefaclor conjugates. Their antimicrobial activities were <i>Acinetobacter</i>-selective and up to 128-fold more potent than that of cefaclor alone. This activity enhancement originated from the fimsbactin-B-dependent active uptake of cefaclor. Thus, fimsbactin-B-based antibiotic delivery ca

Molecular MedicineBiochemistry, Genetics and Molecular Biology
14
Article|11 citations·2015
Total Syntheses and Evaluation of the Siderophore Functions of Fimsbactin B and Its Analogs
Hwisoo Ree, Jimin Kim, Woon Song, Jae Eun Lee, Hak Joong Kim
SJR Q2Bulletin of the Korean Chemical Society

Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

PharmacologyMedicine
15
Article|11 citations·2015
Total Synthesis of Acinetobactin
Jimin Kim, Jae Eun Lee, Hwisoo Ree, Hak Joong Kim
SJR Q2Bulletin of the Korean Chemical Society

Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

Molecular MedicineBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyOrganic ChemistryMolecular MedicinePharmacologyPhysiologyCellular and Molecular Neuroscience

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