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Hanchul Ha

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Hanchul Ha's research lab focuses on structural and molecular mechanisms underlying key biological processes in human health and disease, with a strong emphasis on signal transduction pathways, viral immune evasion, and bacterial efflux systems. The lab investigates the molecular basis of Wnt/β-catenin signaling, SARS-CoV-2 pathogenesis, and tripartite efflux pumps in Gram-negative bacteria, combining structural biology, biochemistry, and functional assays to uncover therapeutic targets. Recent work also explores natural compounds as modulators of disease-relevant enzymes and neuroprotective agents in neurodegenerative models.

signal transductionviral immune evasionbacterial efflux pumpsnatural compound inhibitorsneurodegenerative disease

Research Overview

Papers
350
Total Citations
8,600
Papers (5y)
64
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
64total
2022
2023
2024
2025
2026
Citations per year (5y)
236total
20222023202420252026

Selected Papers

15
1
Article|488 citations·2001
Supramolecular assembly and acid resistance of Helicobacter pylori urease.
Nam‐Chul Ha, Sang-Taek Oh, Jae Young Sung, Kyeung Ah, Mann Hyung Lee, Byung‐Ha Oh
Nature Structural Biology
Environmental EngineeringEnvironmental Science
2
Article|312 citations·2004
Mechanism of Phosphorylation-Dependent Binding of APC to β-Catenin and Its Role in β-Catenin Degradation
Nam‐Chul Ha, Takashi Tonozuka, Jennifer L. Stamos, Hee‐Jung Choi, William I. Weis
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|211 citations·2008
Direct Inhibition of GSK3β by the Phosphorylated Cytoplasmic Domain of LRP6 in Wnt/β-Catenin Signaling
Shunfu Piao, Sunhye Lee, Hyunjoon Kim, Soohwan Yum, Jennifer L. Stamos, Yongbin Xu, Su Jin Lee, Jaewon Lee, Sangtaek Oh, Jin‐Kwan Han, Bum-Joon Park, William I. Weis
SJR Q1PLoS ONEOA

Wnt/beta-catenin signaling plays a central role in development and is also involved in a diverse array of diseases. Binding of Wnts to the coreceptors Frizzled and LRP6/5 leads to phosphorylation of PPPSPxS motifs in the LRP6/5 intracellular region and the inhibition of GSK3beta bound to the scaffold protein Axin. However, it remains unknown how GSK3beta is specifically inhibited upon Wnt stimulation. Here, we show that overexpression of the intracellular region of LRP6 containing a Ser/Thr rich

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|135 citations·2005
Crystal structure of a clip‐domain serine protease and functional roles of the clip domains
Shunfu Piao, Young-Lan Song, Jung Hyun Kim, Sam Yong Park, Ji Won Park, Bok Leul Lee, Byung‐Ha Oh, Nam‐Chul Ha
SJR Q1The EMBO JournalOA
ImmunologyImmunology and Microbiology
5
Article|109 citations·2009
Crystal Structure of the Periplasmic Component of a Tripartite Macrolide-Specific Efflux Pump
Soohwan Yum, Yongbin Xu, Shunfu Piao, Se‐Hoon Sim, Hong‐Man Kim, Wol‐Soon Jo, Kyung‐Jin Kim, Hee‐Seok Kweon, Min‐Ho Jeong, Hyesung Jeon, Kangseok Lee, Nam‐Chul Ha
SJR Q1Journal of Molecular Biology
Molecular MedicineBiochemistry, Genetics and Molecular Biology
6
Article|97 citations·2019
Structural basis for lamin assembly at the molecular level
Jinsook Ahn, Inseong Jo, So‐mi Kang, Seokho Hong, Suhyeon Kim, Soyeon Jeong, Yong‐Hak Kim, Bum-Joon Park, Nam‐Chul Ha
SJR Q1Nature CommunicationsOA

Nuclear structure and function are governed by lamins, which are intermediate filaments that mostly consist of α-helices. Different lamin assembly models have been proposed based on low resolution and fragmented structures. However, their assembly mechanisms are still poorly understood at the molecular level. Here, we present the crystal structure of a long human lamin fragment at 3.2 Å resolution that allows the visualization of the features of the full-length protein. The structure shows an an

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|80 citations·2021
Epigallocatechin Gallate Inhibits the Uridylate-Specific Endoribonuclease Nsp15 and Efficiently Neutralizes the SARS-CoV-2 Strain
Seokho Hong, Sang Hwan Seo, Sun‐Je Woo, Yonghoon Kwon, Manki Song, Nam‐Chul Ha
SJR Q1Journal of Agricultural and Food Chemistry

SARS-CoV-2, the coronavirus strain that initiated the COVID-19 pandemic, and its subsequent variants present challenges to vaccine development and treatment. As the coronavirus evades the host innate immune response at the initial stage of infection, the disease can have a long nonsymptomatic period. The uridylate-specific endoribonuclease Nsp15 processes the viral genome for replication and cleaves the polyU sequence in the viral RNA to interfere with the host immune system. This study screened

Pathology and Forensic MedicineMedicine
8
Article|76 citations·2015
Structure of the Tripartite Multidrug Efflux Pump AcrAB-TolC Suggests an Alternative Assembly Mode
Jinsik Kim, Hyeongseop Jeong, Saemee Song, Hye‐Yeon Kim, Kangseok Lee, Jaekyung Hyun, Nam‐Chul Ha
SJR Q1Molecules and CellsOA

Escherichia coli AcrAB-TolC is a multidrug efflux pump that expels a wide range of toxic substrates. The dynamic nature of the binding or low affinity between the components has impeded elucidation of how the three components assemble in the functional state. Here, we created fusion proteins composed of AcrB, a transmembrane linker, and two copies of AcrA. The fusion protein exhibited acridine pumping activity, suggesting that the protein reflects the functional structure in vivo. To discern the

Molecular MedicineBiochemistry, Genetics and Molecular Biology
9
Article|75 citations·2010
Role of CK1 in GSK3β-mediated phosphorylation and degradation of Snail
Yongbin Xu, S-H Lee, Hyun Sil Kim, Nam Hee Kim, S. Piao, S-H Park, Yunjin Jung, Jong In Yook, B-J Park, Nam‐Chul Ha
SJR Q1OncogeneOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|63 citations·2011
Funnel-like Hexameric Assembly of the Periplasmic Adapter Protein in the Tripartite Multidrug Efflux Pump in Gram-negative Bacteria
Yongbin Xu, Min‐Ho Lee, Arne Moeller, Saemee Song, Bo‐Young Yoon, Hong‐Man Kim, So-Young Jun, Kangseok Lee, Nam‐Chul Ha
SJR Q1Journal of Biological ChemistryOA

Gram-negative bacteria expel diverse toxic chemicals through the tripartite efflux pumps spanning both the inner and outer membranes. The Escherichia coli AcrAB-TolC pump is the principal multidrug exporter that confers intrinsic drug tolerance to the bacteria. The inner membrane transporter AcrB requires the outer membrane factor TolC and the periplasmic adapter protein AcrA. However, it remains ambiguous how the three proteins are assembled. In this study, a hexameric model of the adapter prot

GeneticsBiochemistry, Genetics and Molecular Biology
11
Article|56 citations·2016
Pseudoatomic Structure of the Tripartite Multidrug Efflux Pump AcrAB-TolC Reveals the Intermeshing Cogwheel-like Interaction between AcrA and TolC
Hyeongseop Jeong, Jin-Sik Kim, Saemee Song, Hideki Shigematsu, Takeshi Yokoyama, Jaekyung Hyun, Nam‐Chul Ha
SJR Q1StructureOA
Materials ChemistryMaterials Science
12
Article|56 citations·2011
Functional Implications of an Intermeshing Cogwheel-like Interaction between TolC and MacA in the Action of Macrolide-specific Efflux Pump MacAB-TolC
Yongbin Xu, Saemee Song, Arne Moeller, Nahee Kim, Shunfu Piao, Se-Hoon Sim, Mooseok Kang, Wookyung Yu, Hyun-Soo Cho, Iksoo Chang, Kangseok Lee, Nam‐Chul Ha
SJR Q1Journal of Biological ChemistryOA

Macrolide-specific efflux pump MacAB-TolC has been identified in diverse gram-negative bacteria including Escherichia coli. The inner membrane transporter MacB requires the outer membrane factor TolC and the periplasmic adaptor protein MacA to form a functional tripartite complex. In this study, we used a chimeric protein containing the tip region of the TolC α-barrel to investigate the role of the TolC α-barrel tip region with regard to its interaction with MacA. The chimeric protein formed a s

Molecular MedicineBiochemistry, Genetics and Molecular Biology
13
Article|52 citations·2009
Crystal Structure of the Periplasmic Region of MacB, a Noncanonic ABC Transporter,
Yongbin Xu, Se‐Hoon Sim, Ki Hyun Nam, Xiao Jin, Hong‐Man Kim, Kwang Yeon Hwang, Kangseok Lee, Nam‐Chul Ha
SJR Q1Biochemistry

MacB is a noncanonic ABC-type transporter within Gram-negative bacteria, which is responsible both for the efflux of macrolide antibiotics and for the secretion of heat-stable enterotoxin II. In Escherichia coli, MacB requires the membrane fusion protein MacA and the multifunctional outer membrane channel TolC to pump substrates to the external medium. Sequence analysis of MacB suggested that MacB has a relatively large periplasmic region. To gain insight into how MacB assembles with MacA and To

OncologyMedicine
14
Article|51 citations·2012
Membrane Fusion Proteins of Type I Secretion System and Tripartite Efflux Pumps Share a Binding Motif for TolC in Gram-Negative Bacteria
Minho Lee, So-Young Jun, Bo‐Young Yoon, Saemee Song, Kangseok Lee, Nam‐Chul Ha
SJR Q1PLoS ONEOA

The Hly translocator complex of Escherichia coli catalyzes type I secretion of the toxin hemolysin A (HlyA). In this complex, HlyB is an inner membrane ABC (ATP Binding Cassette)-type transporter, TolC is an outer membrane channel protein, and HlyD is a periplasmic adaptor anchored in the inner membrane that bridges HlyB to TolC. This tripartite organization is reminiscent of that of drug efflux systems such as AcrA-AcrB-TolC and MacA-MacB-TolC of E. coli. We have previously shown the crucial ro

Molecular MedicineBiochemistry, Genetics and Molecular Biology
15
Article|51 citations·2008
Structural basis for the recognition of lysozyme by MliC, a periplasmic lysozyme inhibitor in Gram-negative bacteria
Soohwan Yum, Moon Jong Kim, Yongbin Xu, Xiao Jin, Hee Young Yoo, Ji‐Won Park, Ji Hee Gong, Kwang‐Min Choe, Yong Seok Lee, Nam‐Chul Ha
SJR Q2Biochemical and Biophysical Research Communications
EndocrinologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyMaterials ChemistryEndocrinologyGeneticsImmunologyMolecular Medicine

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