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Hun-Sang Lee

Korea University · Medicine

About the Lab

Professor Hun-Sang Lee's research lab specializes in computational and systems biology, with a focus on developing advanced deep learning and bioinformatics methods for biomedical image analysis, viral pathogenesis, and host-pathogen interactions. The lab pioneers unsupervised and self-supervised learning techniques for image restoration and enhancement—particularly in low-light conditions—while also advancing the understanding of extracellular vesicles and their roles in disease. A significant part of the lab’s work involves identifying host factors essential for viral infections, such as SARS-CoV-2, using CRISPR screening and synthetic biology tools to support therapeutic and diagnostic development.

image enhancementself-supervised learningviral host factorsCRISPR screeningextracellular vesicles

Research Overview

Papers
54
Total Citations
868
Papers (5y)
28
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
28total
2022
2023
2024
2025
2026
Citations per year (5y)
229total
20222023202420252026

Selected Papers

15
1
Article|280 citations·2020
An efficient KRAB domain for CRISPRi applications in human cells
Nader Alerasool, Dmitri Segal, Hunsang Lee, Mikko Taipale
SJR Q1Nature Methods
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|95 citations·2020
Unsupervised Low-Light Image Enhancement Using Bright Channel Prior
Hunsang Lee, Kwanghoon Sohn, Dongbo Min
SJR Q1IEEE Signal Processing Letters

Recent approaches for low-light image enhancement achieve excellent performance through supervised learning based on convolutional neural networks. However, it is still challenging to collect a large amount of low-/normal-light image pairs in real environments for training the networks. In this letter, we propose an unsupervised learning approach for single low-light image enhancement using the bright channel prior (BCP) that the brightest pixel in a small patch is likely to be close to 1. An un

Computer Vision and Pattern RecognitionComputer Science
3
Article|93 citations·2024
Biogenesis and delivery of extracellular vesicles: harnessing the power of EVs for diagnostics and therapeutics
Jivin Yu, Saba Sane, Ji-Eun Kim, Sehee Yun, Hyeon-Jai Kim, Kyeong Beom Jo, Jacob P. Wright, Nooshin Khoshdoozmasouleh, Kunwoo Lee, Ho Taek Oh, Keaton Thiel, Afrin Parvin
SJR Q1Frontiers in Molecular BiosciencesOA

Extracellular vesicles (EVs) are membrane-enclosed particles secreted by a variety of cell types. These vesicles encapsulate a diverse range of molecules, including proteins, nucleic acids, lipids, metabolites, and even organelles derived from their parental cells. While EVs have emerged as crucial mediators of intercellular communication, they also hold immense potential as both biomarkers and therapeutic agents for numerous diseases. A thorough understanding of EV biogenesis is crucial for the

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|62 citations·2022
KNN Local Attention for Image Restoration
Hunsang Lee, Hyesong Choi, Kwanghoon Sohn, Dongbo Min
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)

Recent works attempt to integrate the non-local operation with CNNs or Transformer, achieving remarkable performance in image restoration tasks. The global similarity, however, has the problems of the lack of locality and the high computational complexity that is quadratic to an input resolution. The local attention mechanism alleviates these issues by introducing the inductive bias of the locality with convolution-like operators. However, by focusing only on adjacent positions, the local attent

Computer Vision and Pattern RecognitionComputer Science
5
Article|62 citations·2020
A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions
Dae‐Kyum Kim, Jennifer J. Knapp, Da Kuang, Aditya Chawla, Patricia Cassonnet, Hunsang Lee, Dayag Sheykhkarimli, Payman Samavarchi‐Tehrani, Hala Abdouni, Ashyad Rayhan, Roujia Li, Oxana Pogoutse
SJR Q2G3 Genes Genomes GeneticsOA

The world is facing a global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus. Here we describe a collection of codon-optimized coding sequences for SARS-CoV-2 cloned into Gateway-compatible entry vectors, which enable rapid transfer into a variety of expression and tagging vectors. The collection is freely available. We hope that widespread availability of this SARS-CoV-2 resource will enable many subsequent molecular studies to better understand the viral life cycle and how to block i

Infectious DiseasesMedicine
6
Article|45 citations·2020
Recognition of Semaphorin Proteins by P. sordellii Lethal Toxin Reveals Principles of Receptor Specificity in Clostridial Toxins
Hunsang Lee, Greg L. Beilhartz, Iga Kucharska, Swetha Raman, Hong Cui, Mandy Hiu Yi Lam, Huazhu Liang, John L. Rubinstein, Daniel Schramek, Jean‐Philippe Julien, Roman A. Melnyk, Mikko Taipale
SJR Q1CellOA
ImmunologyImmunology and Microbiology
7
Review|39 citations·2014
Membrane topology of transmembrane proteins: determinants and experimental tools
Hunsang Lee, Hyun Kim
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|30 citations·2021
Adaptive confidence thresholding for monocular depth estimation
Hyesong Choi, Hunsang Lee, Sun Kyung Kim, Sunok Kim, Seungryong Kim, Kwanghoon Sohn, Dongbo Min
2021 IEEE/CVF International Conference on Computer Vision (ICCV)

Self-supervised monocular depth estimation has become an appealing solution to the lack of ground truth labels, but its reconstruction loss often produces over-smoothed results across object boundaries and is incapable of handling occlusion explicitly. In this paper, we propose a new approach to leverage pseudo ground truth depth maps of stereo images generated from self-supervised stereo matching methods. The confidence map of the pseudo ground truth depth map is estimated to mitigate performan

Computer Vision and Pattern RecognitionComputer Science
9
Article|24 citations·2022
Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors
Katherine Chan, Adrian Granda Farias, Hunsang Lee, Furkan Guvenc, Patricia Mero, Kevin R. Brown, Henry N. Ward, Maximilian Billmann, Kamaldeep Aulakh, Audrey Astori, Shahan Haider, Edyta Marcon
SJR Q1HeliyonOA

SARS-CoV-2 depends on host cell components for infection and replication. Identification of virus-host dependencies offers an effective way to elucidate mechanisms involved in viral infection and replication. If druggable, host factor dependencies may present an attractive strategy for anti-viral therapy. In this study, we performed genome wide CRISPR knockout screens in Vero E6 cells and four human cell lines including Calu-3, UM-UC-4, HEK-293 and HuH-7 to identify genetic regulators of SARS-Co

Infectious DiseasesMedicine
10
Article|18 citations·2019
The Mgr2 subunit of the TIM23 complex regulates membrane insertion of marginal stop‐transfer signals in the mitochondrial inner membrane
Seoeun Lee, Hunsang Lee, Suji Yoo, Raffaele Ieva, Martin van der Laan, Gunnar von Heijne, Hyun Kim
SJR Q1FEBS LettersOA

The TIM23 complex mediates membrane insertion of presequence-containing mitochondrial proteins via a stop-transfer mechanism. Stop-transfer signals consist of hydrophobic transmembrane segments and flanking charges. Mgr2 functions as a lateral gatekeeper of the TIM23 complex. However, it remains elusive which features of stop-transfer signals are discriminated by Mgr2. To determine the effects of Mgr2 on the TIM23-mediated stop-transfer pathway, we measured membrane insertion of model transmembr

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|18 citations·2014
Live-cell topology assessment of URG7, MRP6102 and SP-C using glycosylatable green fluorescent protein in mammalian cells
Hunsang Lee, Patricia Lara, Angela Ostuni, Jenny Presto, Jan Johansson, IngMarie Nilsson, Hyun Kim
SJR Q2Biochemical and Biophysical Research CommunicationsOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|18 citations·2014
Structural and Functional Profiling of the Lateral Gate of the Sec61 Translocon
Johannes H. Reithinger, Chewon Yim, Sungmin Kim, Hunsang Lee, Hyun Kim
SJR Q1Journal of Biological ChemistryOA

The evolutionarily conserved Sec61 translocon mediates the translocation and membrane insertion of proteins. For the integration of proteins into the membrane, the Sec61 translocon opens laterally to the lipid bilayer. Previous studies suggest that the lateral opening of the channel is mediated by the helices TM2b and TM7 of a pore-forming subunit of the Sec61 translocon. To map key residues in TM2b and TM7 in yeast Sec61 that modulate lateral gating activity, we performed alanine scanning and i

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|17 citations·2012
Glycosylatable GFP as a compartment-specific membrane topology reporter
Hunsang Lee, Jisoo Min, Gunnar von Heijne, Hyun Kim
SJR Q2Biochemical and Biophysical Research Communications
Cell BiologyBiochemistry, Genetics and Molecular Biology
14
Article|13 citations·2017
Molecular insights into the m-AAA protease–mediated dislocation of transmembrane helices in the mitochondrial inner membrane
Seoeun Lee, Hunsang Lee, Suji Yoo, Hyun Kim
SJR Q1Journal of Biological ChemistryOA

Protein complexes involved in respiration, ATP synthesis, and protein import reside in the mitochondrial inner membrane; thus, proper regulation of these proteins is essential for cell viability. The <i>m</i>-AAA protease, a conserved hetero-hexameric AAA (ATPase associated with diverse cellular activities) protease, composed of the Yta10 and Yta12 proteins, regulates mitochondrial proteostasis by mediating protein maturation and degradation. It also recognizes and mediates the dislocation of me

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|10 citations·2023
Cross-Scale KNN Image Transformer for Image Restoration
Hunsang Lee, Hyesong Choi, Kwanghoon Sohn, Dongbo Min
SJR Q1IEEE AccessOA

Numerous image restoration approaches have been proposed based on attention mechanism, achieving superior performance to convolutional neural networks (CNNs) based counterparts. However, they do not leverage the attention model in a form fully suited to the image restoration tasks. In this paper, we propose an image restoration network with a novel attention mechanism, called cross-scale <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">k</i> -NN i

Computer Vision and Pattern RecognitionComputer Science

Research Areas

Molecular BiologyInfectious DiseasesOncologyComputer Vision and Pattern RecognitionOrthopedics and Sports MedicineArtificial Intelligence

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