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Jaekyung Kim

Korea Advanced Institute of Science and Technology · Neuroscience

About the Lab

Professor Jaekyung Kim's research lab specializes in understanding the neural mechanisms underlying learning, memory consolidation, and recovery after brain injury, with a focus on the dynamic interactions between brain regions during sleep and wakefulness. The lab integrates advanced neurophysiological techniques—such as in vivo electrophysiology, fast-scan cyclic voltammetry (FSCV), and novel voltammetric methods like FCSWV and MCSWV—with behavioral and computational approaches to study neuromodulation, synaptic plasticity, and cortical network reorganization. A central theme is how sleep-dependent neural oscillations, including slow oscillations and spindles, support memory consolidation and functional recovery after stroke, particularly in motor circuits. The lab also pioneers quantitative, unbiased analytical methods for neurochemical data to enhance the reliability of dopamine and other neurotransmitter measurements.

neural oscillationsmemory consolidationstroke recoveryin vivo neurochemistrysleep and plasticity

Research Overview

Papers
15
Total Citations
428
Papers (5y)
12
Primary Field
Neuroscience

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
12total
2019
2021
2022
2024
2025
Citations per year (5y)
384total
20192021202220242025

Selected Papers

15
1
Article|267 citations·2019
Competing Roles of Slow Oscillations and Delta Waves in Memory Consolidation versus Forgetting
Jaekyung Kim, Tanuj Gulati, Karunesh Ganguly
SJR Q1CellOA
Cognitive NeuroscienceNeuroscience
2
Article|72 citations·2022
Cortical–hippocampal coupling during manifold exploration in motor cortex
Jaekyung Kim, Abhilasha Joshi, Loren M. Frank, Karunesh Ganguly
SJR Q1NatureOA

Abstract Systems consolidation—a process for long-term memory stabilization—has been hypothesized to occur in two stages 1–4 . Whereas new memories require the hippocampus 5–9 , they become integrated into cortical networks over time 10–12 , making them independent of the hippocampus. How hippocampal–cortical dialogue precisely evolves during this and how cortical representations change in concert is unknown. Here, we use a skill learning task 13,14 to monitor the dynamics of cross-area coupling

Cognitive NeuroscienceNeuroscience
3
Article|42 citations·2018
Fast Cyclic Square-Wave Voltammetry To Enhance Neurotransmitter Selectivity and Sensitivity
Cheonho Park, Yoonbae Oh, Hojin Shin, Jaekyung Kim, Yumin Kang, Jeongeun Sim, Hyun U. Cho, Han Kyu Lee, Sung Jun Jung, Charles D. Blaha, Kevin E. Bennet, Michael L. Heien
SJR Q1Analytical Chemistry

Although fast-scan cyclic voltammetry (FSCV) has been widely used for in vivo neurochemical detection, the sensitivity and selectivity of the technique can be further improved. In this study, we develop fast cyclic square-wave voltammetry (FCSWV) as a novel voltammetric technique that combines large-amplitude cyclic square-wave voltammetry (CSWV) with background subtraction. A large-amplitude, square-shaped potential was applied to induce cycling through multiple redox reactions within a square

Electrical and Electronic EngineeringEngineering
4
Article|23 citations·2022
Recovery of consolidation after sleep following stroke—interaction of slow waves, spindles, and GABA
Jaekyung Kim, Ling Guo, April Hishinuma, Stefan Lemke, Dhakshin Ramanathan, Seok Joon Won, Karunesh Ganguly
SJR Q1Cell ReportsOA

Sleep is known to promote recovery after stroke. Yet it remains unclear how stroke affects neural processing during sleep. Using an experimental stroke model in rats along with electrophysiological monitoring of neural firing and sleep microarchitecture, here we show that sleep processing is altered by stroke. We find that the precise coupling of spindles to global slow oscillations (SOs), a phenomenon that is known to be important for memory consolidation, is disrupted by a pathological increas

Cognitive NeuroscienceNeuroscience
5
Article|7 citations·2024
Coupling of Slow Oscillations in the Prefrontal and Motor Cortex Predicts Onset of Spindle Trains and Persistent Memory Reactivations
David Darevsky, Jaekyung Kim, Karunesh Ganguly
SJR Q1Journal of NeuroscienceOA

Sleep is known to drive the consolidation of motor memories. During nonrapid eye movement (NREM) sleep, the close temporal proximity between slow oscillations (SOs) and spindles ("nesting" of SO-spindles) is known to be essential for consolidation, likely because it is closely associated with the reactivation of awake task activity. Interestingly, recent work has found that spindles can occur in temporal clusters or "trains." However, it remains unclear how spindle trains are related to the nest

Cognitive NeuroscienceNeuroscience
6
Article|7 citations·2021
Automatic and Reliable Quantification of Tonic Dopamine Concentrations In Vivo Using a Novel Probabilistic Inference Method
Jaekyung Kim, Abhijeet S. Barath, Aaron E. Rusheen, Juan M. Rojas Cabrera, J. Blair Price, Hojin Shin, Abhinav Goyal, Jason Yuen, Danielle E. Jondal, Charles D. Blaha, Kendall H. Lee, Dong Pyo Jang
SJR Q1ACS OmegaOA

Dysregulation of the neurotransmitter dopamine (DA) is implicated in several neuropsychiatric conditions. Multiple-cyclic square-wave voltammetry (MCSWV) is a state-of-the-art technique for measuring tonic DA levels with high sensitivity (<5 nM), selectivity, and spatiotemporal resolution. Currently, however, analysis of MCSWV data requires manual, qualitative adjustments of analysis parameters, which can inadvertently introduce bias. Here, we demonstrate the development of a computational techn

ElectrochemistryChemistry
7
Article|6 citations·2025
Restoration of temporal separability between beta and movement ensemble co-firing with motor recovery
Hoseok Choi, Jaekyung Kim, Preeya Khanna, Sandon Griffin, Lisa Novik, Robert J. Morecraft, John H. Morrison, Karunesh Ganguly
SJR Q1NeuronOA

Stroke disrupts movement control by damaging descending motor pathways, yet the cortical dynamics underlying recovery remain poorly defined. Using a non-human primate model of primary motor cortex injury with impaired reach-to-grasp control, we examined how dorsal premotor cortex (PMd) activity supports recovery. Specifically, we studied the interaction between beta activity (12-30 Hz), often linked to "idle" states, and execution-related ensemble co-firing quantified with dimensionality reducti

Cognitive NeuroscienceNeuroscience
8
Review|2 citations·2025
Systems memory consolidation during sleep: oscillations, neuromodulators, and synaptic remodeling
Jaekyung Kim, Minjeong Park
SJR Q1BMB ReportsOA

Memory consolidation transforms newly acquired experiences into stable long-term memories essential for learning and cognition. This process involves systems consolidation, where memory traces are reorganized across brain regions, and synaptic consolidation, which fine-tunes local neural connections. Sleep plays a critical role in both, coordinating memory reactivation, synaptic remodeling, and long-range neural communication. Systems consolidation is supported by stagespecific brain oscillation

Cognitive NeuroscienceNeuroscience
9
Article|2 citations·2005
Expression Patterns of Odorant-Binding Proteins (OBPs) in a Termite (Reticulitermes speratus)
Jong-Bum Ra, Jaekyung Kim, Gyu-Hyeok Kim
SJR Q2Journal of the Korean Wood Science and Technology

This research was performed to investigate the expression patterns of odorant-binding proteins (OBPs) migrating hydrophobic semiochemicals such as pheromone to the olfactory receptors in a termite (Reticulitermes speratus). Antennas and legs were cut from soldier and worker termites, respectively, and RT-PCR were conducted to investigate the existence of the OBPs reported up to now. Blast search suggested that the OBPs obtained were highly homologues of the OBPs reported. In worker termites, OBP

Cellular and Molecular NeuroscienceNeuroscience
10
Article|0 citations·2019
Changes in the coupling of slow-waves with spindles tracks motor recovery after stroke
Jaekyung Kim, April Hishinuma, Ling Guo, Seok-Joon Won, Karunesh Ganguly
IBRO ReportsOA
Ocean EngineeringEngineering
11
dataset|0 citations·2022
Dataset for the Kim et al., Nature, 2022
Jaekyung Kim
Zenodo (CERN European Organization for Nuclear Research)OA

These are the produced data used in the publication of Kim et al., Nature, 2022 (https://doi.org/10.1038/s41586-022-05533-z). <br> These were analyzed on Matlab 2021a and, thus, provided with the mat file format. <br> For further questions, please contact the lead contact of the publications or the first author Jaekyung Kim (jaekyung.kim@ucsf.edu). <strong>-------------------- Description about dataset</strong> The number of animals = 6 rats (Animal 1 - Animal 6). Single mat file is for a single

Radiology, Nuclear Medicine and ImagingMedicine
12
dataset|0 citations·2022
Dataset for the Kim et al., Nature, 2022
Jaekyung Kim
Zenodo (CERN European Organization for Nuclear Research)OA

These are the produced data used in the publication of Kim et al., Nature, 2022 (https://doi.org/10.1038/s41586-022-05533-z). <br> These were analyzed on Matlab 2021a and, thus, provided with the mat file format. <br> For further questions, please contact the lead contact of the publications or the first author Jaekyung Kim (jaekyung.kim@ucsf.edu). <strong>-------------------- Description about dataset</strong> The number of animals = 6 rats (Animal 1 - Animal 6). Single mat file is for a single

Radiology, Nuclear Medicine and ImagingMedicine
13
Article|0 citations·2005
일본 흰개미(Reticulitermes speratus)의 Odorant-Binding Proteins(OBPs) 발현 현상
Jong-Bum Ra, Gyu Hyeok Kim, Jaekyung Kim
Sensory SystemsNeuroscience
14
Preprint|0 citations·2021
Recovery of consolidation after sleep following experimental stroke – interaction of slow waves, spindles and GABA
Jaekyung Kim, Ling Guo, April Hishinuma, Stefan Lemke, Dhakshin Ramanathan, Seok-Joon Won, Karunesh Ganguly
bioRxiv (Cold Spring Harbor Laboratory)OA

ABSTRACT Sleep is known to be important for promoting recovery after brain injuries such as stroke. Yet, it remains unclear how such injuries affect neural processing during sleep and how to precisely enhance sleep-dependent memory processing during recovery. Using an experimental model of focal cortical stroke in rats along with long-term electrophysiological monitoring of neural firing and sleep microarchitecture, here we show that sleep-dependent neural processing is altered after stroke indu

Cognitive NeuroscienceNeuroscience
15
Article|0 citations·2025
Disentanglement of preparatory and movement dynamics with motor recovery in primates
Karunesh Ganguly, Hoseok Choi, Jaekyung Kim, Preeya Khanna, Sandon Griffin, Robert J. Morecraft
SJR Q1Brain stimulationOA

The brain exhibits remarkable plasticity across various learning and memory tasks, as well as during recovery from injury.Leveraging this inherent plasticity through brain stimulation presents a promising avenue for treating neural disorders.To implement such treatments effectively, advanced engineering tools and a comprehensive understanding of how stimulation-induced plasticity influences network dynamics and connectivity at a large scale are crucial.We have developed innovative large-scale in

Cognitive NeuroscienceNeuroscience

Research Areas

Cognitive NeuroscienceRadiology, Nuclear Medicine and ImagingElectrical and Electronic EngineeringElectrochemistryCellular and Molecular NeuroscienceOcean Engineering

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