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Ji Youn Lee

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Ji Youn Lee's research lab specializes in the development of advanced fluorescent probes and targeted delivery systems for subcellular organelles, with a focus on mitochondria and lysosomes. The lab pioneers innovative chemical tools—such as activity-based probes, peptidomimetics, and MRI-active conjugates—to enable real-time, non-invasive imaging of cellular signaling and disease-related processes. Their work bridges chemical biology, nanomaterials, and translational medicine, aiming to advance the understanding and treatment of cancer, neurodegenerative diseases, and metabolic disorders. The lab also investigates the environmental and biological impacts of nanomaterials, particularly quantum dots, to ensure safe and effective biomedical applications.

fluorescent probesmitochondria targetingorganelle imagingactivity-based probesnanomaterials toxicity

Research Overview

Papers
206
Total Citations
4,391
Papers (5y)
44
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
44total
2021
2022
2023
2024
2025
Citations per year (5y)
410total
20212022202320242025

Selected Papers

15
1
Review|152 citations·2013
Target deconvolution techniques in modern phenotypic profiling
Jiyoun Lee, Matthew Bogyo
SJR Q1Current Opinion in Chemical Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|75 citations·2009
Development of Near-Infrared Fluorophore (NIRF)-Labeled Activity-Based Probes for in Vivo Imaging of Legumain
Jiyoun Lee, Matthew Bogyo
SJR Q1ACS Chemical BiologyOA

Asparaginyl endopeptidase, or legumain, is a lysosomal cysteine protease that was originally identified in plants and later found to be involved in antigen presentation in higher eukaryotes. Legumain is also up-regulated in a number of human cancers, and recent studies suggest that it may play important functional roles in the process of tumorigenesis. However, detailed functional studies in relevant animal models of human disease have been hindered by the lack of suitably selective small molecu

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|68 citations·2019
Mitochondrion-Targeting Peptides and Peptidomimetics: Recent Progress and Design Principles
Soyoung Kim, Ho Yeon Nam, Jiyoun Lee, Jiwon Seo
SJR Q1Biochemistry

Mitochondria are multifunctional subcellular organelles whose operations encompass energy production, signal transduction, and metabolic regulation. Given their wide range of roles, they have been studied extensively as a potential therapeutic target for the treatment of various diseases, including cancer, diabetes, and neurodegenerative diseases. Mitochondrion-mediated pathways have been identified as promising targets in the context of these diseases. However, the delivery of specific probes a

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|54 citations·2009
Acute toxicity of two CdSe/ZnSe quantum dots with different surface coating in Daphnia magna under various light conditions
Jiyoun Lee, Kyunghee Ji, Jungkon Kim, Chansik Park, Kook Hee Lim, Tae Hyun Yoon, Kyungho Choi
SJR Q2Environmental Toxicology

With an increasing use of quantum dots (QDs) in many applications, their potential hazard is of growing concern. However, little is known about their ecotoxicity, especially in vivo. In the present study, we employed freshwater macroinvertebrate, Daphnia magna, to evaluate toxicity characteristics of cadmium selenide/zinc selenide (CdSe/ZnSe) in relation to surface coatings, e.g., mercaptopropionic acid QD ((MPA)QD), and gum arabic/tri-n-octylphosphine oxide QD ((GA/TOPO)QD), and light condition

PollutionEnvironmental Science
5
Article|53 citations·2001
N-(3-acyloxy-2-benzylpropyl)-N′-(4-hydroxy-3-methoxybenzyl)thiourea derivatives as potent vanilloid receptor agonists and analgesics
Jeewoo Lee, Jeewoo Lee, Jiyoun Lee, Jiyoun Lee, Jiyoung Kim, Soo Yeon Kim, Moon Woo Chun, Hawon Cho, Sun Wook Hwang, Uhtaek Oh, Youngho Park, Víctor E. Márquez
SJR Q2Bioorganic & Medicinal Chemistry
PhysiologyMedicine
6
Article|53 citations·2017
Effect of side chain hydrophobicity and cationic charge on antimicrobial activity and cytotoxicity of helical peptoids
Jiyoun Lee, Dahyun Kang, Jieun Choi, Wei Huang, Mayken W. Wadman, Annelise E. Barron, Jiwon Seo
SJR Q2Bioorganic & Medicinal Chemistry Letters
MicrobiologyImmunology and Microbiology
7
Article|48 citations·2013
The Selective A3AR Antagonist LJ-1888 Ameliorates UUO-Induced Tubulointerstitial Fibrosis
Jiyoun Lee, Inah Hwang, Heejin Lee, Hyuk W Lee, Lak-Shin Jeong, Hunjoo Ha
SJR Q1American Journal Of PathologyOA
GeneticsMedicine
8
Article|47 citations·2017
Discovery of Potent Human Glutaminyl Cyclase Inhibitors as Anti-Alzheimer’s Agents Based on Rational Design
Van-Hai Hoang, Phuong‐Thao Tran, Minghua Cui, Van T.H. Ngo, Jihyae Ann, Jongmi Park, Jiyoun Lee, Kwang‐Hyun Choi, Hanyang Cho, Hee Kim, Hee-Jin Ha, Hyun-Seok Hong
SJR Q1Journal of Medicinal ChemistryOA

Glutaminyl cyclase (QC) has been implicated in the formation of toxic amyloid plaques by generating the N -terminal pyroglutamate of β-amyloid peptides (pGlu-Aβ) and thus may participate in the pathogenesis of Alzheimer’s disease (AD). We designed a library of glutamyl cyclase (QC) inhibitors based on the proposed binding mode of the preferred substrate, Aβ 3E−42 . An in vitro structure–activity relationship study identified several excellent QC inhibitors demonstrating 5- to 40-fold increases i

Computational Theory and MathematicsComputer Science
9
Article|42 citations·2005
A Steroid-Conjugated Contrast Agent for Magnetic Resonance Imaging of Cell Signaling
Jiyoun Lee, Mark J. Zylka, David J. Anderson, Joanna E. Burdette, Teresa K. Woodruff, Thomas J. Meade
SJR Q1Journal of the American Chemical Society

We have synthesized the first steroid hormone-MR contrast agent conjugate designed to track the cell signaling process upon binding to a gene switch system. The derivative has a high relaxivity and when tested in vitro is active as a progesterone antagonist (RU-486). By combining a transcriptional system and a noninvasive imaging technology, such as MRI, it would be a powerful tool to research the cell signaling pathway in vivo.

Materials ChemistryMaterials Science
10
Article|39 citations·2018
Mitochondria-Targeting Peptoids
Ho Yeon Nam, Jong‐Ah Hong, Jieun Choi, Seung‐Heon Shin, Steve K. Cho, Jiwon Seo, Jiyoun Lee
SJR Q1Bioconjugate Chemistry

Mitochondria-specific delivery methods offer a valuable tool for studying mitochondria-related diseases and provide breakthroughs in therapeutic development. Although several small-molecule and peptide-based transporters have been developed, peptoids, proteolysis-resistant peptidomimetics, are a promising alternative to current approaches. We designed a series of amphipathic peptoids and evaluated their cellular uptake and mitochondrial localization. Two peptoids with cyclohexyl residues demonst

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|38 citations·2020
Direct cyclopropanation of activated N-heteroarenes via site- and stereoselective dearomative reactions
Jiyoun Lee, Donguk Ko, Hyun-Ju Park, Eun Jeong Yoo
SJR Q1Chemical ScienceOA

the dearomative addition of sulfur ylides to activated N-heteroarenes. A series of biologically significant molecular skeletons was obtained by the direct cyclopropanation of quinolinium zwitterions. Furthermore, a straightforward synthetic route to optically enriched cyclopropane-fused heterocycles was developed using sulfur ylides as chiral nucleophiles in the 1,4-dearomative reaction.

Organic ChemistryChemistry
12
Article|36 citations·2016
Discovery of benzimidazole derivatives as modulators of mitochondrial function: A potential treatment for Alzheimer's disease
Tae‐Hun Kim, Ha Yun Yang, Beoung Gun Park, Seo Yun Jung, Jong‐Hyun Park, Ki Duk Park, Sun‐Joon Min, Jinsung Tae, Hyejin Yang, Suengmok Cho, Sung Jin Cho, Hyundong Song
SJR Q1European Journal of Medicinal ChemistryOA
PharmacologyMedicine
13
Article|36 citations·2013
Aminopropyl carbazole analogues as potent enhancers of neurogenesis
Hye Jin Yoon, Sun-Young Kong, Min-Hye Park, Yongsung Cho, Sung‐Eun Kim, Jae-Yeon Shin, Sunghye Jung, Jiyoun Lee, Jiyoun Lee, Farhanullah, Hyun‐Jung Kim, Jeewoo Lee
SJR Q2Bioorganic & Medicinal Chemistry
Developmental NeuroscienceNeuroscience
14
Article|35 citations·2007
Rational Design, Synthesis, and Biological Evaluation of Progesterone-Modified MRI Contrast Agents
Jiyoun Lee, Joanna E. Burdette, Keith W. MacRenaris, Devkumar Mustafi, Teresa K. Woodruff, Thomas J. Meade
Chemistry & BiologyOA
Materials ChemistryMaterials Science
15
Article|32 citations·2011
Synthesis and evaluation of aza-peptidyl inhibitors of the lysosomal asparaginyl endopeptidase, legumain
Jiyoun Lee, Matthew Bogyo
SJR Q2Bioorganic & Medicinal Chemistry LettersOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyOrganic ChemistryPhysiologySensory SystemsPlant SciencePharmacology

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