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Jin Yong-Xun Kim

Seoul National University · Medicine

About the Lab

Professor Jin Yong-Xun Kim's research lab focuses on host-microbe interactions, particularly the mechanisms by which probiotic bacteria modulate host immunity and health. The lab investigates the functional properties of lactic acid bacteria, including their probiotic potential, biofilm formation, and roles in infection resistance and host defense. A central theme is the molecular regulation of bacterial persistence and virulence through toxin-antitoxin systems and RNase-mediated gene regulation. The lab also explores the impact of microbial components—such as exosomes from bovine colostrum—on host cell physiology, especially in bone metabolism and intestinal barrier function.

probioticstoxin-antitoxin systemshost-microbe interactionmucosal immunityexosomes

Research Overview

Papers
466
Total Citations
20,667
Papers (5y)
69
Primary Field
Medicine

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
69total
2022
2023
2024
2025
2026
Citations per year (5y)
1,333total
20222023202420252026

Selected Papers

15
1
Article|269 citations·2008
Released exopolysaccharide (r-EPS) produced from probiotic bacteria reduce biofilm formation of enterohemorrhagic Escherichia coli O157:H7
Younghoon Kim, Sejong Oh, Sae Hun Kim
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|257 citations·2009
Toxins Hha and CspD and small RNA regulator Hfq are involved in persister cell formation through MqsR in Escherichia coli
Younghoon Kim, Thomas K. Wood
SJR Q2Biochemical and Biophysical Research Communications
GeneticsBiochemistry, Genetics and Molecular Biology
3
Article|210 citations·2018
Probiotic and anti-inflammatory potential of Lactobacillus rhamnosus 4B15 and Lactobacillus gasseri 4M13 isolated from infant feces
Nam Su Oh, Jae Yeon Joung, Ji Young Lee, Younghoon Kim
SJR Q1PLoS ONEOA

A total of 22 Lactobacillus strains, which were isolated from infant feces were evaluated for their probiotic potential along with resistance to low pH and bile salts. Eight isolates (L. reuteri 3M02 and 3M03, L. gasseri 4M13, 4R22, 5R01, 5R02, and 5R13, and L. rhamnosus 4B15) with high tolerance to acid and bile salts, and ability to adhere to the intestine were screened from 22 strains. Further, functional properties of 8 Lactobacillus strains, such as anti-oxidation, inhibition of α-glucosida

Food ScienceAgricultural and Biological Sciences
4
Article|182 citations·2008
Toxin-Antitoxin Systems in Escherichia coli Influence Biofilm Formation through YjgK (TabA) and Fimbriae
Younghoon Kim, Xiaoxue Wang, Qun Ma, Xue‐Song Zhang, Thomas K. Wood
SJR Q2Journal of BacteriologyOA

The roles of toxin-antitoxin (TA) systems in bacteria have been debated. Here, the role of five TA systems in regard to biofilm development was investigated (listed as toxin/antitoxin: MazF/MazE, RelE/RelB, ChpB, YoeB/YefM, and YafQ/DinJ). Although these multiple TA systems were reported previously to not impact bacterial fitness, we found that deletion of the five TA systems decreased biofilm formation initially (8 h) on three different surfaces and then increased biofilm formation (24 h) by de

Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|182 citations·2008
Polymersome delivery of siRNA and antisense oligonucleotides
Young-Hoon Kim, Manorama Tewari, J. David Pajerowski, Shenshen Cai, Shamik Sen, Jason H. Williams, Shashank R. Sirsi, Gordon J. Lutz, Dennis E. Discher
SJR Q1Journal of Controlled ReleaseOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|169 citations·2010
Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD
Younghoon Kim, Xiaoxue Wang, Xue‐Song Zhang, Simina Grigoriu, Rebecca Page, Wolfgang Peti, Thomas K. Wood
SJR Q1Environmental Microbiology

Previously we identified that the Escherichia coli protein MqsR (YgiU) functions as a toxin and that it is involved in the regulation of motility by quorum sensing signal autoinducer-2 (AI-2). Furthermore, MqsR is directly associated with biofilm development and is linked to the development of persister cells. Here we show that MqsR and MqsA (YgiT) are a toxin/antitoxin (TA) pair, which, in significant difference to other TA pairs, regulates additional loci besides its own. We have recently iden

GeneticsBiochemistry, Genetics and Molecular Biology
7
Article|162 citations·2012
Caenorhabditis elegans Immune Conditioning with the Probiotic Bacterium Lactobacillus acidophilus Strain NCFM Enhances Gram-Positive Immune Responses
Younghoon Kim, Eleftherios Mylonakis
SJR Q1Infection and ImmunityOA

Although the immune response of Caenorhabditis elegans to microbial infections is well established, very little is known about the effects of health-promoting probiotic bacteria on evolutionarily conserved C. elegans host responses. We found that the probiotic Gram-positive bacterium Lactobacillus acidophilus NCFM is not harmful to C. elegans and that L. acidophilus NCFM is unable to colonize the C. elegans intestine. Conditioning with L. acidophilus NCFM significantly decreased the burden of a

AgingBiochemistry, Genetics and Molecular Biology
8
Article|143 citations·2008
Inhibition of Escherichia coli O157:H7 attachment by interactions between lactic acid bacteria and intestinal epithelial cells.
Younghoon Kim, Sae Hun Kim, Kwang Youn Whang, Young Jun Kim, Sejong Oh
PubMed

The intestinal epithelial cell (IEC) layer of the intestinal tract makes direct contact with a number of microbiota communities, including bacteria known to have deleterious health effects. IECs possess innate protective strategies against pathogenic challenge, which primarily involve the formation of a physicochemical barrier. Intestinal tract mucins are principal components of the mucus layer on epithelial surfaces, and perform a protective function against microbial damage. However, little is

Food ScienceAgricultural and Biological Sciences
9
Article|111 citations·2005
Usefulness of magnetic resonance volumetric evaluation in predicting response to preoperative concurrent chemoradiotherapy in patients with resectable rectal cancer
Young Hoon Kim, Dae Yong Kim, Tae Hyun Kim, Kyung Hae Jung, Hee Jin Chang, Seung‐Yong Jeong, Dae Kyung Sohn, Hyo Seong Choi, Joong Bae Ahn, Dae Hyun Kim, Seok-Byung Lim, Jong Seok Lee
SJR Q1International Journal of Radiation Oncology*Biology*PhysicsOA
OncologyMedicine
10
Article|106 citations·2020
Short communication: Dietary bovine milk–derived exosomes improve bone health in an osteoporosis-induced mouse model
Bong‐Sik Yun, Brighton E. Maburutse, Min Kyoung Kang, Miri Park, D.J. Park, Younghoon Kim, Sangnam Oh
SJR Q1Journal of Dairy ScienceOA

Osteoporosis is a systemic skeletal disease characterized by low bone mass and micro-architectural deterioration of bone tissue, with a consequent increase in bone fragility and fracture susceptibility. In an aged society with increased life expectancy, the incidence rate of osteoporosis is also rapidly increasing. Inadequate nutrition may negatively influence bone metabolism. Recently, many studies have investigated the functionality of milk-derived exosomes, which play important roles in cell-

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|105 citations·2018
Tumor heterogeneity of pancreas head cancer assessed by CT texture analysis: association with survival outcomes after curative resection
Gabin Yun, Young Hoon Kim, Yoon Jin Lee, Bohyoung Kim, Jin‐Hyeok Hwang, Dong Joon Choi
SJR Q1Scientific ReportsOA

The value of image based texture features as a powerful method to predict prognosis and assist clinical management in cancer patients has been established recently. However, texture analysis using histograms and grey-level co-occurrence matrix in pancreas cancer patients has rarely been reported. We aimed to analyze the association of survival outcomes with texture features in pancreas head cancer patients. Eighty-eight pancreas head cancer patients who underwent preoperative CT images followed

OncologyMedicine
12
Article|103 citations·2013
Genetic Alterations of K-ras, p53, c-erbB-2, and DPC4 in Pancreatic Ductal Adenocarcinoma and Their Correlation With Patient Survival
Sang Hyun Shin, Song Cheol Kim, Seung‐Mo Hong, Young Hoon Kim, Ki Byung Song, Kwang‐Min Park, Youngjoo Lee
SJR Q2Pancreas

This study may help to understand the genetic feature of pancreatic cancer and its survival effect in our population. This shows that additional genetic insights would contribute to the improvement of patients' prognosis.

OncologyMedicine
13
Article|101 citations·2013
TWILITE: A recommendation system for Twitter using a probabilistic model based on latent Dirichlet allocation
Younghoon Kim, Kyuseok Shim
SJR Q1Information Systems
Information SystemsComputer Science
14
Article|92 citations·2015
Survival benefit of levetiracetam in patients treated with concomitant chemoradiotherapy and adjuvant chemotherapy with temozolomide for glioblastoma multiforme
Young‐Hoon Kim, Tackeun Kim, Jin‐Deok Joo, Jung Ho Han, Yu Jung Kim, In Ah Kim, Chang‐Ho Yun, Chae‐Yong Kim
SJR Q1CancerOA

BACKGROUND: A chemosensitizing effect of levetiracetam (LEV) has been suggested because LEV inhibits O-6 methylguanine-DNA methyltransferase (MGMT). However, the survival benefit of LEV has not been clinically documented. The objective of this study was to assess the survival benefit of LEV compared with other antiepileptic drugs as a chemosensitizer to temozolomide for patients with glioblastoma. METHODS: In total, 103 consecutive patients with primary glioblastoma who received concomitant chem

GeneticsMedicine
15
Review|80 citations·2009
Magnetic Resonance Imaging of Adenocarcinoma of the Pancreas
Busakorn Vachiranubhap, Young Hoon Kim, N. Cem Balci, Richard C. Semelka
SJR Q3Topics in Magnetic Resonance Imaging

Magnetic resonance imaging (MRI) is a valuable tool in the assessment of the full spectrum of pancreatic disease. A standard MR protocol including noncontrast T1-weighted fat-suppressed and dynamic gadolinium-enhanced gradient-echo imagings is sensitive for the evaluation of pancreatic cancer. Optimal use of MRI in the investigation of pancreatic cancer occurs in the following circumstances: (1) detection of small non-contour-deforming tumors, (2) evaluation of local extension and vascular encas

OncologyMedicine

Research Areas

Molecular BiologyOncologyGeneticsEpidemiologyFood SciencePulmonary and Respiratory Medicine

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