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Jinman Kim

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Jinman Kim's research lab specializes in developing and applying advanced optical and molecular tools to investigate fundamental cellular processes with high spatiotemporal precision. The lab focuses on understanding the regulation of cell signaling, cytoskeletal dynamics, and cell migration through optogenetics, live-cell imaging, and biochemical dissection of key pathways such as TGF-β, YAP/TAZ, and Rho GTPase signaling. A central theme is the integration of light-based control systems with cellular physiology to decode complex signaling networks in live cells and tissues, particularly in the context of development and disease. The lab also explores the application of wavefront shaping for deep-tissue optogenetics, enabling precise manipulation of intracellular signals through scattering biological tissues.

optogeneticscell migrationsignaling dynamicsYAP/TAZTGF-β signaling

Research Overview

Papers
46
Total Citations
1,017
Papers (5y)
10
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
10total
2022
2023
2024
2025
2026
Citations per year (5y)
45total
20222023202420252026

Selected Papers

15
1
Article|196 citations·2014
Spatiotemporal Control of Fibroblast Growth Factor Receptor Signals by Blue Light
Nury Kim, Jin Man Kim, Minji Lee, Cha Yeon Kim, Ki-Young Chang, Won Do Heo
Chemistry & Biology
Plant ScienceAgricultural and Biological Sciences
2
Article|196 citations·2015
Actin remodelling factors control ciliogenesis by regulating YAP/TAZ activity and vesicle trafficking
Jongshin Kim, Haiin Jo, Hyowon Hong, Min Hwan Kim, Jin Man Kim, Jake June-Koo Lee, Won Do Heo, Joon Kim
SJR Q1Nature CommunicationsOA

Primary cilia exert a profound impact on cell signalling and cell cycle progression. Recently, actin cytoskeleton destabilization has been recognized as a dominant inducer of ciliogenesis, but the exact mechanisms regulating ciliogenesis remain poorly understood. Here we show that the actin cytoskeleton remodelling controls ciliogenesis by regulating transcriptional coactivator YAP/TAZ as well as ciliary vesicle trafficking. Cytoplasmic retention of YAP/TAZ correlates with active ciliogenesis ei

Cell BiologyBiochemistry, Genetics and Molecular Biology
3
Article|84 citations·2016
Optogenetic oligomerization of Rab GTPases regulates intracellular membrane trafficking
Mai K. Nguyen, Cha Yeon Kim, Jin Man Kim, Byung Ouk Park, Sangkyu Lee, Hyerim Park, Won Do Heo
SJR Q1Nature Chemical Biology
Cellular and Molecular NeuroscienceNeuroscience
4
Article|51 citations·2015
Optogenetic control of cell signaling pathway through scattering skull using wavefront shaping
Jonghee Yoon, Minji Lee, KyeoReh Lee, Nury Kim, Jin Man Kim, Jongchan Park, Hyeonseung Yu, Chulhee Choi, Won Do Heo, YongKeun Park
SJR Q1Scientific ReportsOA

We introduce a non-invasive approach for optogenetic regulation in biological cells through highly scattering skull tissue using wavefront shaping. The wavefront of the incident light was systematically controlled using a spatial light modulator in order to overcome multiple light-scattering in a mouse skull layer and to focus light on the target cells. We demonstrate that illumination with shaped waves enables spatiotemporal regulation of intracellular Ca(2+) level at the individual-cell level.

Acoustics and UltrasonicsPhysics and Astronomy
5
Article|45 citations·2016
Optogenetic toolkit reveals the role of Ca 2+ sparklets in coordinated cell migration
Jin Man Kim, Minji Lee, Nury Kim, Won Do Heo
SJR Q1Proceedings of the National Academy of SciencesOA

Cell migration is controlled by various Ca(2+) signals. Local Ca(2+) signals, in particular, have been identified as versatile modulators of cell migration because of their spatiotemporal diversity. However, little is known about how local Ca(2+) signals coordinate between the front and rear regions in directionally migrating cells. Here, we elucidate the spatial role of local Ca(2+) signals in directed cell migration through combinatorial application of an optogenetic toolkit. An optically guid

Cellular and Molecular NeuroscienceNeuroscience
6
Article|43 citations·2017
Spatiotemporal Control of TGF-β Signaling with Light
Yuchao Li, Minji Lee, Nury Kim, Guoyu Wu, Difan Deng, Jin Man Kim, Xuedong Liu, Won Do Heo, Zhike Zi
SJR Q1ACS Synthetic BiologyOA

Cells employ signaling pathways to make decisions in response to changes in their immediate environment. Transforming growth factor beta (TGF-β) is an important growth factor that regulates many cellular functions in development and disease. Although the molecular mechanisms of TGF-β signaling have been well studied, our understanding of this pathway is limited by the lack of tools that allow the control of TGF-β signaling with high spatiotemporal resolution. Here, we developed an optogenetic sy

Plant ScienceAgricultural and Biological Sciences
7
Article|40 citations·2016
PLEKHG3 enhances polarized cell migration by activating actin filaments at the cell front
Trang Nguyen, Wei Sun Park, Byung Ouk Park, Cha Yeon Kim, Yohan Oh, Jin Man Kim, Hana Choi, Taeyoon Kyung, Cheol‐Hee Kim, Gabsang Lee, Klaus M. Hahn, Tobias Meyer
SJR Q1Proceedings of the National Academy of SciencesOA

Cells migrate by directing Ras-related C3 botulinum toxin substrate 1 (Rac1) and cell division control protein 42 (Cdc42) activities and by polymerizing actin toward the leading edge of the cell. Previous studies have proposed that this polarization process requires a local positive feedback in the leading edge involving Rac small GTPase and actin polymerization with PI3K likely playing a coordinating role. Here, we show that the pleckstrin homology and RhoGEF domain containing G3 (PLEKHG3) is a

Cell BiologyBiochemistry, Genetics and Molecular Biology
8
Article|33 citations·2014
Dosimetric effects of multileaf collimator leaf width on intensity‐modulated radiotherapy for head and neck cancer
Chae‐Seon Hong, Sang Gyu Ju, Min Kyu Kim, Jung‐in Kim, Jin Man Kim, Tae‐Suk Suh, Youngyih Han, Yong Chan Ahn, Doo Ho Choi, Heerim Nam, Hee Chul Park
SJR Q1Medical Physics

PURPOSE: The authors evaluated the effects of multileaf collimator (MLC) leaf width (2.5 vs. 5 mm) on dosimetric parameters and delivery efficiencies of intensity-modulated radiation therapy (IMRT) and volumetric-modulated arc therapy (VMAT) for head and neck (H&N) cancers. METHODS: The authors employed two types of mock phantoms: large-sized head and neck (LH&N) and small-sized C-shape (C-shape) phantoms. Step-and-shoot IMRT (S&S_IMRT) and VMAT treatment plans were designed with 2.5- and 5.0-mm

RadiationPhysics and Astronomy
9
Review|26 citations·2016
The Effect of Capsaicin on Salivary Gland Dysfunction
Yonghwan Shin, Jin Man Kim, Kyungpyo Park
SJR Q1MoleculesOA

Capsaicin (trans-8-methyl-N-vanilyl-6-nonenamide) is a unique alkaloid isolated from hot chili peppers of the capsicum family. Capsaicin is an agonist of transient receptor potential vanilloid subtype 1 (TRPV1), which is expressed in nociceptive sensory neurons and a range of secretory epithelia, including salivary glands. Capsaicin has analgesic and anti-inflammatory properties in sensory neurons. Recently, increasing evidence has indicated that capsaicin also affects saliva secretion and infla

Sensory SystemsNeuroscience
10
Article|21 citations·2017
G protein-coupled calcium-sensing receptor is a crucial mediator of MTA-induced biological activities
Jin Man Kim, Seul-Ki Choi, Kyu Hwan Kwack, Sun‐Young Kim, Hyeon‐Woo Lee, Kyungpyo Park
SJR Q1Biomaterials
BiotechnologyBiochemistry, Genetics and Molecular Biology
11
Article|20 citations·2013
Inhibition of matrix metalloproteinases expression in human dental pulp cells by all-trans retinoic acid
Jin Man Kim, Sang Wook Kang, Su-Mi Shin, Duck Su Kim, Kyong-Kyu Choi, Eun-Cheol Kim, Sun‐Young Kim
SJR Q1International Journal of Oral ScienceOA

All-trans retinoic acid (ATRA) inhibits matrix metalloproteinase (MMP)-2 and MMP-9 in synovial fibroblasts, skin fibroblasts, bronchoalveolar lavage cells and cancer cells, but activates MMP-9 in neuroblast and leukemia cells. Very little is known regarding whether ATRA can activate or inhibit MMPs in human dental pulp cells (HDPCs). The purpose of this study was to determine the effects of ATRA on the production and secretion of MMP-2 and -9 in HDPCs. The productions and messenger RNA (mRNA) ex

Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|17 citations·2021
A mechanogenetic role for the actomyosin complex in branching morphogenesis of epithelial organs
Jin Man Kim, YoungJu Jo, Ju Won Jung, Kyungpyo Park
SJR Q1DevelopmentOA

The actomyosin complex plays crucial roles in various life processes by balancing the forces generated by cellular components. In addition to its physical function, the actomyosin complex participates in mechanotransduction. However, the exact role of actomyosin contractility in force transmission and the related transcriptional changes during morphogenesis are not fully understood. Here, we report a mechanogenetic role of the actomyosin complex in branching morphogenesis using an organotypic cu

Cell BiologyBiochemistry, Genetics and Molecular Biology
13
Article|16 citations·2020
Targeting Actomyosin Contractility Suppresses Malignant Phenotypes of Acute Myeloid Leukemia Cells
Fengjiao Chang, So Jung Kong, Lele Wang, Beom K. Choi, Hyewon Lee, Chan Kim, Jin Man Kim, Kyungpyo Park
SJR Q1International Journal of Molecular SciencesOA

Actomyosin-mediated contractility is required for the majority of force-driven cellular events such as cell division, adhesion, and migration. Under pathological conditions, the role of actomyosin contractility in malignant phenotypes of various solid tumors has been extensively discussed, but the pathophysiological relevance in hematopoietic malignancies has yet to be elucidated. In this study, we found enhanced actomyosin contractility in diverse acute myeloid leukemia (AML) cell lines represe

Cell BiologyBiochemistry, Genetics and Molecular Biology
14
Article|14 citations·2022
Functional expression of oxytocin receptors in pulp-dentin complex
Ju Won Jung, So Young Park, Eun Jin Seo, Il Ho Jang, Yeji Park, Dasun Lee, Dohyun Kim, Jin Man Kim
SJR Q1BiomaterialsOA
Social PsychologyPsychology
15
Article|14 citations·2017
TRPM7 Is Involved in Volume Regulation in Salivary Glands
Jin Man Kim, Se‐Young Choi, K. Park
SJR Q1Journal of Dental Research

Under hypotonic conditions, the regulatory volume decrease (RVD) is essential to maintain physiological homeostasis and functions in diverse biological systems. Intracellular Ca 2+ has been reported as an important mediator of this response, but the underlying Ca 2+ mechanism responsible for RVD is still controversial. Here we investigate the role of Ca 2+ in the RVD response using live-cell imaging, microspectrofluorimetry, and a patch-clamp technique. A typical RVD was observed in submandibula

Sensory SystemsNeuroscience

Research Areas

Cell BiologyPlant ScienceRadiationMolecular BiologyCellular and Molecular NeuroscienceAcoustics and Ultrasonics

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