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Joo-eun Choi

Yonsei University · Engineering

About the Lab

Professor Joo-eun Choi's research lab specializes in the development of advanced computational and machine learning methodologies for biomedical diagnostics and dynamic system modeling. The lab focuses on integrating deep learning, Gaussian processes, and multi-agent systems to address challenges in medical image analysis, osteoporosis risk prediction, and hemodynamic modeling of vascular diseases. Key research directions include interpretable AI for clinical decision support, spatio-temporal process estimation using self-organizing sensor networks, and computational modeling of biomechanical systems such as abdominal aortic aneurysms and cellular autophagy pathways. The lab emphasizes both algorithmic innovation and real-world clinical translation through data-driven, explainable, and adaptive systems.

medical image analysisinterpretable AIspatio-temporal modelingcomputational biomechanicsself-organizing agents

Research Overview

Papers
253
Total Citations
3,685
Papers (5y)
73
Primary Field
Engineering

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
73total
2022
2023
2024
2025
2026
Citations per year (5y)
448total
20222023202420252026

Selected Papers

15
1
Article|224 citations·2009
Distributed learning and cooperative control for multi-agent systems
Jongeun Choi, Songhwai Oh, Roberto Horowitz
SJR Q1Automatica
Computer Networks and CommunicationsComputer Science
2
Article|218 citations·2020
Automated Skeletal Classification with Lateral Cephalometry Based on Artificial Intelligence
Hee-Jin Yu, S.R. Cho, Minji Kim, W.H. Kim, Jin‐Woo Kim, Jongeun Choi
SJR Q1Journal of Dental Research

Lateral cephalometry has been widely used for skeletal classification in orthodontic diagnosis and treatment planning. However, this conventional system, requiring manual tracing of individual landmarks, contains possible errors of inter- and intravariability and is highly time-consuming. This study aims to provide an accurate and robust skeletal diagnostic system by incorporating a convolutional neural network (CNN) into a 1-step, end-to-end diagnostic system with lateral cephalograms. A multim

Oral SurgeryDentistry
3
Article|85 citations·2011
Adaptive Sampling for Learning Gaussian Processes Using Mobile Sensor Networks
Yunfei Xu, Jongeun Choi
SJR Q1SensorsOA

This paper presents a novel class of self-organizing sensing agents that adaptively learn an anisotropic, spatio-temporal gaussian process using noisy measurements and move in order to improve the quality of the estimated covariance function. This approach is based on a class of anisotropic covariance functions of gaussian processes introduced to model a broad range of spatio-temporal physical phenomena. The covariance function is assumed to be unknown a priori. Hence, it is estimated by the max

Artificial IntelligenceComputer Science
4
Article|56 citations·2022
Interpretable Deep-Learning Approaches for Osteoporosis Risk Screening and Individualized Feature Analysis Using Large Population-Based Data: Model Development and Performance Evaluation
Bogyeong Suh, Heejin Yu, Hye‐Yeon Kim, Sang-Hwa Lee, Sung Hye Kong, Jin‐Woo Kim, Jongeun Choi
SJR Q1Journal of Medical Internet ResearchOA

BACKGROUND: Osteoporosis is one of the diseases that requires early screening and detection for its management. Common clinical tools and machine-learning (ML) models for screening osteoporosis have been developed, but they show limitations such as low accuracy. Moreover, these methods are confined to limited risk factors and lack individualized explanation. OBJECTIVE: The aim of this study was to develop an interpretable deep-learning (DL) model for osteoporosis risk screening with clinical fea

Orthopedics and Sports MedicineMedicine
5
Article|51 citations·2013
Efficient Bayesian spatial prediction with mobile sensor networks using Gaussian Markov random fields
Yunfei Xu, Jongeun Choi, Sarat C. Dass, Tapabrata Maiti
SJR Q1Automatica
Electrical and Electronic EngineeringEngineering
6
Article|45 citations·2008
Swarm intelligence for achieving the global maximum using spatio-temporal Gaussian processes
Jongeun Choi, Joonho Lee, Songhwai Oh

This paper presents a novel class of self-organizing multi-agent systems that form a swarm and learn a spatio- temporal process through noisy measurements from neighbors for various global goals. The physical spatio-temporal process of interest is modeled by a spatio-temporal Gaussian process. Each agent maintains its own posterior predictive statistics of the Gaussian process based on measurements from neighbors. A set of biologically inspired navigation strategies are identified from the poste

Computer Networks and CommunicationsComputer Science
7
Article|44 citations·2023
AI-based dental caries and tooth number detection in intraoral photos: Model development and performance evaluation
Kyubaek Yoon, Hye-Min Jeong, Jin‐Woo Kim, Jung Hyun Park, Jongeun Choi
SJR Q1Journal of Dentistry
Oral SurgeryDentistry
8
Article|35 citations·2012
Sea lamprey orient toward a source of a synthesized pheromone using odor-conditioned rheotaxis
Nicholas S. Johnson, Azizah Muhammad, Henry T. Thompson, Jongeun Choi, Weiming Li
SJR Q1Behavioral Ecology and Sociobiology
Insect ScienceAgricultural and Biological Sciences
9
Article|34 citations·2015
Computational Growth and Remodeling of Abdominal Aortic Aneurysms Constrained by the Spine
Mehdi Farsad, Shahrokh Zeinali‐Davarani, Jongeun Choi, Seungik Baek
SJR Q3Journal of Biomechanical EngineeringOA

Abdominal aortic aneurysms (AAAs) evolve over time, and the vertebral column, which acts as an external barrier, affects their biomechanical properties. Mechanical interaction between AAAs and the spine is believed to alter the geometry, wall stress distribution, and blood flow, although the degree of this interaction may depend on AAAs specific configurations. In this study, we use a growth and remodeling (G&R) model, which is able to trace alterations of the geometry, thus allowing us to compu

Pulmonary and Respiratory MedicineMedicine
10
Article|33 citations·2003
Design and control of a thermal stabilizing system for a MEMS optomechanical uncooled infrared imaging camera
Jongeun Choi, Joji Yamaguchi, Sophie Morales, Roberto Horowitz, Yang Zhao, Arun Majumdar
SJR Q1Sensors and Actuators A Physical
Biomedical EngineeringEngineering
11
Article|33 citations·2014
ERK1/2 is involved in luteal cell autophagy regulation during corpus luteum regression via an mTOR-independent pathway
Jongeun Choi, M. Jo, Eun Lee, DooSeok Choi
SJR Q1Molecular Human Reproduction

Autophagy is known to be regulated by the phosphoinositide-3 kinase (PI3K)-protein kinase B (AKT) and/or mitogen-activated protein kinase 1/2 (MEK1/2)-extracellular signal-regulated kinase 1/2 (ERK1/2) pathways, leading to activation of mammalian target of rapamycin (mTOR), a major negative regulator of autophagy. However, some reports have also suggested that autophagic regulation by the PI3K-AKT and/or MEK1/2-ERK1/2 pathways may not be mediated by mTOR activity, and there is no direct evidence

EpidemiologyMedicine
12
Article|31 citations·2012
Spatial prediction with mobile sensor networks using Gaussian processes with built-in Gaussian Markov random fields
Yunfei Xu, Jongeun Choi
SJR Q1Automatica
Computer Networks and CommunicationsComputer Science
13
Article|31 citations·2023
Multiplexed DNA-functionalized graphene sensor with artificial intelligence-based discrimination performance for analyzing chemical vapor compositions
Yun Ji Hwang, Heejin Yu, Gilho Lee, Iman Shackery, Jin Sil Seong, Youngmo Jung, Seung-Hyun Sung, Jongeun Choi, Seong Chan Jun
SJR Q1Microsystems & NanoengineeringOA

This study presents a new technology that can detect and discriminate individual chemical vapors to determine the chemical vapor composition of mixed chemical composition in situ based on a multiplexed DNA-functionalized graphene (MDFG) nanoelectrode without the need to condense the original vapor or target dilution. To the best of our knowledge, our artificial intelligence (AI)-operated arrayed electrodes were capable of identifying the compositions of mixed chemical gases with a mixed ratio in

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|30 citations·2001
Efficient Chip Breaker Design by Predicting the Chip Breaking Performance
Jongeun Choi, S.J. Lee
SJR Q1The International Journal of Advanced Manufacturing Technology
Electrical and Electronic EngineeringEngineering
15
Article|22 citations·2008
Biologically-inspired Navigation Strategies for Swarm Intelligence using Spatial Gaussian Processes
Jongeun Choi, Joonho Lee, Songhwai Oh
IFAC Proceedings Volumes
Computer Networks and CommunicationsComputer Science

Research Areas

Control and Systems EngineeringArtificial IntelligenceComputer Networks and CommunicationsBiomedical EngineeringPulmonary and Respiratory MedicineAerospace Engineering

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