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Joo-ri Sim

Yonsei University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Joo-ri Sim's research lab focuses on cellular and molecular mechanisms underlying host-pathogen interactions, protein trafficking under stress conditions, and immune modulation by metabolites. Key research directions include the role of unconventional protein secretion (UPS) in rescuing misfolded disease-related proteins such as CFTR and pendrin, the regulation of inflammasome activation by microbial components and short-chain fatty acids (SCFAs), and the identification of host factors—such as TMED proteins and ANO6—involved in viral entry and membrane scrambling. The lab integrates cell biology, immunology, and virology to uncover novel therapeutic targets for infectious diseases, genetic disorders, and viral infections like SARS-CoV-2.

unconventional protein secretionshort-chain fatty acidsinflammasome activationviral entryprotein misfolding

Research Overview

Papers
6
Total Citations
266
Papers (5y)
6
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
6total
2016
2018
2020
2022
2023
Citations per year (5y)
266total
20162018202020222023

Selected Papers

6
1
Review|118 citations·2016
Lipoteichoic acids as a major virulence factor causing inflammatory responses via Toll-like receptor 2
Seok‐Seong Kang, Ju‐Ri Sim, Cheol‐Heui Yun, Seung Hyun Han
SJR Q1Archives of Pharmacal Research
ImmunologyImmunology and Microbiology
2
Article|43 citations·2023
Butyrate potentiates Enterococcus faecalis lipoteichoic acid-induced inflammasome activation via histone deacetylase inhibition
Ok-Jin Park, Ye-Eun Ha, Ju‐Ri Sim, Dong‐Wook Lee, Eun Hye Lee, Sunyoung Kim, Cheol‐Heui Yun, Seung Hyun Han
SJR Q1Cell Death DiscoveryOA

Abstract Enterococcus faecalis , a Gram-positive opportunistic pathogen having lipoteichoic acid (LTA) as a major virulence factor, is closely associated with refractory apical periodontitis. Short-chain fatty acids (SCFAs) are found in the apical lesion and may affect inflammatory responses induced by E. faecalis . In the current study, we investigated inflammasome activation by E. faecalis LTA (Ef.LTA) and SCFAs in THP-1 cells. Among SCFAs, butyrate in combination with Ef.LTA markedly enhanced

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|36 citations·2022
Amelioration of SARS-CoV-2 infection by ANO6 phospholipid scramblase inhibition
Ju‐Ri Sim, Dong Hoon Shin, Pil‐Gu Park, Sohyeon Park, Joon‐Yong Bae, Youngchae Lee, Dha-Yei Kang, Ye Jin Kim, Sowon Aum, Shin Hye Noh, Su Jin Hwang, Hye‐Ran Cha
SJR Q1Cell ReportsOA

elevation and ANO6-dependent phosphatidylserine externalization in ACE2/TMPRSS2-positive mammalian cells. A high-throughput screening of drug-like chemical libraries identifies three different structural classes of chemicals showing ANO6 inhibitory effects. Among them, A6-001 displays the highest potency and ANO6 selectivity and it inhibits the single-round infection of SARS2-PsV in ACE2/TMPRSS2-positive HEK 293T cells. More importantly, A6-001 strongly inhibits authentic SARS-CoV-2-induced phos

Infectious DiseasesMedicine
4
Article|35 citations·2022
TMED3 Complex Mediates ER Stress‐Associated Secretion of CFTR, Pendrin, and SARS‐CoV‐2 Spike
Hak Park, Soo Kyung Seo, Ju‐Ri Sim, Su Jin Hwang, Ye Jin Kim, Dong Hoon Shin, Dong Geon Jang, Shin Hye Noh, Pil‐Gu Park, Si Hwan Ko, Mi Hwa Shin, Jae Young Choi
SJR Q1Advanced ScienceOA

Under ER stress conditions, the ER form of transmembrane proteins can reach the plasma membrane via a Golgi-independent unconventional protein secretion (UPS) pathway. However, the targeting mechanisms of membrane proteins for UPS are unknown. Here, this study reports that TMED proteins play a critical role in the ER stress-associated UPS of transmembrane proteins. The gene silencing results reveal that TMED2, TMED3, TMED9 and TMED10 are involved in the UPS of transmembrane proteins, such as CFT

Cell BiologyBiochemistry, Genetics and Molecular Biology
5
Article|17 citations·2018
Killed Whole-Cell Oral Cholera Vaccine Induces CCL20 Secretion by Human Intestinal Epithelial Cells in the Presence of the Short-Chain Fatty Acid, Butyrate
Ju‐Ri Sim, Seok‐Seong Kang, Dae-Sang Lee, Cheol‐Heui Yun, Seung Hyun Han
SJR Q1Frontiers in ImmunologyOA

Short-chain fatty acids (SCFAs), such as acetate, butyrate, and propionate, modulate immune responses in the gut. However, the effect of SCFAs on mucosal vaccine-induced immune cell migration is poorly understood. Here, we investigated whether SCFAs modulate chemokine expression induced by the killed whole-cell oral cholera vaccine, Shanchol™, in human intestinal epithelial cells. Shanchol™ induced expression of CCL2, CCL5, CCL20, and CXCL10 at the mRNA level, but not at the protein level. Inter

ImmunologyImmunology and Microbiology
6
Article|17 citations·2020
IRE1α kinase–mediated unconventional protein secretion rescues misfolded CFTR and pendrin
Hak Park, Dong Hoon Shin, Ju‐Ri Sim, Sowon Aum, Min Goo Lee
SJR Q1Science AdvancesOA

), which cause cystic fibrosis and congenital hearing loss, respectively, evoke protein misfolding and subsequent defects in their cell surface trafficking. Here, we report that activation of the IRE1α kinase pathway can rescue the cell surface expression of ΔF508-CFTR and p.H723R-pendrin through a Golgi-independent unconventional protein secretion (UPS) route. In mammalian cells, inhibition of IRE1α kinase, but not inhibition of IRE1α endonuclease and the downstream effector XBP1, inhibited CFT

Cell BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

ImmunologyCell BiologyMolecular BiologyInfectious Diseases

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