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Sae-Kyu Choi

Pohang University of Science and Technology · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Sae-Kyu Choi's research lab focuses on molecular and cellular mechanisms underlying metabolic regulation, with a particular emphasis on energy homeostasis, lipid metabolism, and cellular stress responses. The lab investigates key signaling pathways involving kinases such as LKB1, SIKs, and PINK1, and their roles in metabolic diseases, neurodegeneration, and stem cell biology. Using integrative approaches in Drosophila and mammalian models, the lab explores how post-translational modifications—such as sumoylation—regulate transcription factors like SREBP1c to control lipogenesis and energy balance. The research also extends to environmental biotechnology, including the application of microbial biomass for dye removal, highlighting a translational aspect of metabolic and cellular engineering.

metabolic regulationkinase signalinglipid metabolismpost-translational modificationstem cell niche

Research Overview

Papers
28
Total Citations
1,577
Papers (5y)
11
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
11total
2020
2021
2022
2023
2024
Citations per year (5y)
670total
20202021202220232024

Selected Papers

15
1
Article|291 citations·2020
Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells
Bing Zhang, Sai Ma, Inbal Rachmin, Megan He, Pankaj Baral, Sekyu Choi, William Antônio Gonçalves, Yulia Shwartz, Eva M. Fast, Yiqun Su, Leonard I. Zon, Aviv Regev
SJR Q1NatureOA
Cell BiologyBiochemistry, Genetics and Molecular Biology
2
Article|176 citations·2021
Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence
Sekyu Choi, Bing Zhang, Sai Ma, Meryem Gonzalez-Celeiro, Daniel Stein, Xin Jin, Seung Tea Kim, Yuan-Lin Kang, Antoine Besnard, Amélie Rezza, Laura Grisanti, Jason D. Buenrostro
SJR Q1NatureOA
UrologyMedicine
3
Article|117 citations·2015
A Neuronal Pathway that Controls Sperm Ejection and Storage in Female Drosophila
Kang‐Min Lee, Ivana Daubnerová, R. Elwyn Isaac, Chen Zhang, Sekyu Choi, Jongkyeong Chung, Young‐Joon Kim
SJR Q1Current BiologyOA
Cellular and Molecular NeuroscienceNeuroscience
4
Article|103 citations·2004
Biosorptive Decolorization of Reactive Orange 16 Using the Waste Biomass of Corynebacterium glutamicum
Sung Wook Won, Sekyu Choi, Bong‐Woo Chung, D. Park, Jong Moon Park, Yeoung‐Sang Yun
SJR Q1Industrial & Engineering Chemistry Research

The protonated waste biomass of Corynebacterium glutamicum discharged from an industrial lysine fermentation plant was used for the removal of Reactive Orange 16 (RO16). The maximum sorption capacities of the biomass were as high as 186.6 ± 7.1 and 154.8 ± 2.8 mg g -1 at pH 1 and 2, respectively, which are comparable to those of commercial sorbents such as activated carbons and ion-exchange resins. As the solution pH decreased, the dye uptake increased and, under neutral conditions, it was negli

Water Science and TechnologyEnvironmental Science
5
Article|98 citations·2016
Identification of a Peptidergic Pathway Critical to Satiety Responses in Drosophila
Soohong Min, Hyo-Seok Chae, Yong-Hoon Jang, Sekyu Choi, Sion Lee, Yong Taek Jeong, Walton D. Jones, Seok Jun Moon, Young‐Joon Kim, Jongkyeong Chung
SJR Q1Current BiologyOA
Cellular and Molecular NeuroscienceNeuroscience
6
Article|92 citations·2015
Feeding and Fasting Signals Converge on the LKB1-SIK3 Pathway to Regulate Lipid Metabolism in Drosophila
Sekyu Choi, Dae‐Sik Lim, Jongkyeong Chung
SJR Q1PLoS GeneticsOA

LKB1 plays important roles in governing energy homeostasis by regulating AMP-activated protein kinase (AMPK) and other AMPK-related kinases, including the salt-inducible kinases (SIKs). However, the roles and regulation of LKB1 in lipid metabolism are poorly understood. Here we show that Drosophila LKB1 mutants display decreased lipid storage and increased gene expression of brummer, the Drosophila homolog of adipose triglyceride lipase (ATGL). These phenotypes are consistent with those of SIK3

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|75 citations·2013
Characterization of PINK1 (PTEN-induced Putative Kinase 1) Mutations Associated with Parkinson Disease in Mammalian Cells and Drosophila*
Saera Song, Seoyeon Jang, Jeehye Park, Sunhoe Bang, Sekyu Choi, Kyum‐Yil Kwon, Xiaoxi Zhuang, Eunjoon Kim, Jongkyeong Chung
SJR Q1Journal of Biological ChemistryOA

Mutations in PINK1 (PTEN-induced putative kinase 1) are tightly linked to autosomal recessive Parkinson disease (PD). Although more than 50 mutations in PINK1 have been discovered, the role of these mutations in PD pathogenesis remains poorly understood. Here, we characterized 17 representative PINK1 pathogenic mutations in both mammalian cells and Drosophila. These mutations did not affect the typical cleavage patterns and subcellular localization of PINK1 under both normal and damaged mitochon

NeurologyMedicine
8
Article|65 citations·2024
Deciphering the molecular mechanisms of stem cell dynamics in hair follicle regeneration
Jung Hyun Lee, Sekyu Choi
SJR Q1Experimental & Molecular MedicineOA

Hair follicles, which are connected to sebaceous glands in the skin, undergo cyclic periods of regeneration, degeneration, and rest throughout adult life in mammals. The crucial function of hair follicle stem cells is to maintain these hair growth cycles. Another vital aspect is the activity of melanocyte stem cells, which differentiate into melanin-producing melanocytes, contributing to skin and hair pigmentation. Sebaceous gland stem cells also have a pivotal role in maintaining the skin barri

UrologyMedicine
9
Article|64 citations·2013
PIASy-Mediated Sumoylation of SREBP1c Regulates Hepatic Lipid Metabolism upon Fasting Signaling
Gha Young Lee, Hagoon Jang, Jae Ho Lee, Jin Young Huh, Sekyu Choi, Jongkyeong Chung, Jae Bum Kim
SJR Q2Molecular and Cellular BiologyOA

SREBP1c is a key transcription factor that regulates de novo lipogenesis during anabolic periods. However, the molecular mechanisms involved in the suppression of SREBP1c under nutritional deprivation are largely unknown. In this study, we demonstrate that the small ubiquitin-related modifier (SUMO) E3 ligase, a protein inhibitor of activated STAT Y (PIASy), sumoylates SREBP1c at Lys98, leading to suppression of the hepatic lipogenic program upon fasting-induced signals. In primary hepatocytes,

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|63 citations·2010
Drosophila Salt-inducible Kinase (SIK) Regulates Starvation Resistance through cAMP-response Element-binding Protein (CREB)-regulated Transcription Coactivator (CRTC)
Sekyu Choi, Wonho Kim, Jongkyeong Chung
SJR Q1Journal of Biological ChemistryOA

Salt-inducible kinase (SIK), one of the AMP-activated kinase (AMPK)-related kinases, has been suggested to play important functions in glucose homeostasis by inhibiting the cAMP-response element-binding protein (CREB)-regulated transcription coactivator (CRTC). To examine the role of SIK in vivo, we generated Drosophila SIK mutant and found that the mutant flies have higher amounts of lipid and glycogen stores and are resistant to starvation. Interestingly, SIK transcripts are highly enriched in

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|61 citations·2021
Loss of UCHL1 rescues the defects related to Parkinson’s disease by suppressing glycolysis
Su Jin Ham, D. S. Lee, Wen Jun Xu, Eunjoo Cho, Sekyu Choi, Soohong Min, Sunghyouk Park, Jongkyeong Chung
SJR Q1Science AdvancesOA

and mammalian cells. In UCHL1 knockout cells, cellular pyruvate production and ATP levels are diminished, and the activity of AMP-activated protein kinase (AMPK) is highly induced. Consequently, the activated AMPK promotes the mitophagy mediated by Unc-51-like kinase 1 (ULK1) and FUN14 domain-containing 1 (FUNDC1), which underlies the effects of UCHL1 deficiency in rescuing PD-related defects. Furthermore, we identify tripartite motif-containing 63 (TRIM63) as a previously unknown E3 ligase of P

EpidemiologyMedicine
12
Article|56 citations·2010
Drosophila Porin/VDAC Affects Mitochondrial Morphology
Jeehye Park, Yongsung Kim, Sekyu Choi, Hyongjong Koh, Sang‐Hee Lee, Jin‐Man Kim, Jongkyeong Chung
SJR Q1PLoS ONEOA

Voltage-dependent anion channel (VDAC) has been suggested to be a mediator of mitochondrial-dependent cell death induced by Ca(2+) overload, oxidative stress and Bax-Bid activation. To confirm this hypothesis in vivo, we generated and characterized Drosophila VDAC (porin) mutants and found that Porin is not required for mitochondrial apoptosis, which is consistent with the previous mouse studies. We also reported a novel physiological role of Porin. Loss of porin resulted in locomotive defects a

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|48 citations·2017
Mitochondrial calcium uniporter in Drosophila transfers calcium between the endoplasmic reticulum and mitochondria in oxidative stress-induced cell death
Sekyu Choi, Xianglan Quan, Sunhoe Bang, Heesuk Yoo, Jiyoung Kim, Ji‐Won Park, Kyu‐Sang Park, Jongkyeong Chung
SJR Q1Journal of Biological ChemistryOA

MCU is responsible for endoplasmic reticulum-to-mitochondrial calcium transfer and for cell death due to mitochondrial dysfunction under oxidative stress.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|45 citations·2018
Cereblon Maintains Synaptic and Cognitive Function by Regulating BK Channel
Tae-Yong Choi, Seunghyun Lee, Yoon-Jung Kim, Jae Ryul Bae, Kwang Min Lee, Youhwa Jo, Soojeong Kim, A-Ram Lee, Sekyu Choi, La‐Mee Choi, Sunhoe Bang, Mi‐Ryoung Song
SJR Q1Journal of NeuroscienceOA

Mutations in the cereblon ( CRBN ) gene cause human intellectual disability, one of the most common cognitive disorders. However, the molecular mechanisms of CRBN -related intellectual disability remain poorly understood. We investigated the role of CRBN in synaptic function and animal behavior using male mouse and Drosophila models. Crbn knock-out (KO) mice showed normal brain and spine morphology as well as intact synaptic plasticity; however, they also exhibited decreases in synaptic transmis

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|43 citations·2015
Tumor Necrosis Factor Receptor-associated Protein 1 (TRAP1) Mutation and TRAP1 Inhibitor Gamitrinib-triphenylphosphonium (G-TPP) Induce a Forkhead Box O (FOXO)-dependent Cell Protective Signal from Mitochondria
Hyun‐Jin Kim, Jinsung Yang, Min Ju Kim, Sekyu Choi, Ju-Ryung Chung, Ju-Ryung Chung, Jong‐Min Kim, Young Hyun Yoo, Jongkyeong Chung, Jongkyeong Chung, Hyongjong Koh
SJR Q1Journal of Biological ChemistryOA

TRAP1 (tumor necrosis factor receptor-associated protein 1), a mitochondrial Hsp90 family chaperone, has been identified as a critical regulator of cell survival and bioenergetics in tumor cells. To discover novel signaling networks regulated by TRAP1, we generated Drosophila TRAP1 mutants. The mutants successfully developed into adults and produced fertile progeny, showing that TRAP1 is dispensable in development and reproduction. Surprisingly, mutation or knockdown of TRAP1 markedly enhanced D

Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyUrologyCellular and Molecular NeuroscienceCell BiologyWater Science and TechnologyNeurology

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