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Woojung Shin

Korea Advanced Institute of Science and Technology · Engineering

About the Lab

Professor Woojung Shin's research lab specializes in developing advanced microphysiological systems, particularly gut-on-a-chip platforms, to model human intestinal biology and host-microbiome interactions with high physiological relevance. The lab focuses on recreating complex microenvironments such as the anoxic-oxic interface, mechanical forces, and morphogen gradients to study intestinal morphogenesis, barrier function, and inflammation. By integrating microfluidics, organoid technology, and computational modeling, the lab uncovers fundamental mechanisms of intestinal homeostasis, immune responses, and microbial crosstalk.

gut-on-a-chiphost-microbiome crosstalkintestinal morphogenesismicrophysiological systemsorganoid culture

Research Overview

Papers
71
Total Citations
2,570
Papers (5y)
17
Primary Field
Engineering

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
17total
2022
2023
2024
2025
2026
Citations per year (5y)
351total
20222023202420252026

Selected Papers

15
1
Article|302 citations·2018
Intestinal barrier dysfunction orchestrates the onset of inflammatory host–microbiome cross-talk in a human gut inflammation-on-a-chip
Woojung Shin, Hyun Jung Kim
SJR Q1Proceedings of the National Academy of SciencesOA

Significance Identification of the trigger of human intestinal inflammation can be a compelling clinical strategy for developing effective and target-specific antiinflammatory therapeutics. The pathomimetic “gut inflammation-on-a-chip” inspired by dextran sodium sulfate (DSS)-induced colitis models in mice enabled the independent uncoupling of complex inflammatory cross-talks and the combinatorial recoupling of individual contributing factors one at a time to identify the initiator of inflammato

Biomedical EngineeringEngineering
2
Article|180 citations·2019
A Robust Longitudinal Co-culture of Obligate Anaerobic Gut Microbiome With Human Intestinal Epithelium in an Anoxic-Oxic Interface-on-a-Chip
Woojung Shin, Alexander Wu, Miles W. Massidda, Charles R. Foster, Newin Thomas, Dong-Woo Lee, Hong Koh, Youngwon Ju, Joohoon Kim, Hyun Jung Kim
SJR Q1Frontiers in Bioengineering and BiotechnologyOA

The majority of human gut microbiome is comprised of obligate anaerobic bacteria that exert essential metabolic functions in the human colon. These anaerobic gut bacteria constantly crosstalk with the colonic epithelium in a mucosal anoxic-oxic interface (AOI). However, <i>in vitro</i> recreation of the metabolically mismatched colonic AOI has been technically challenging. Furthermore, stable co-culture of the obligate anaerobic commensal microbiome and epithelial cells in a mechanically dynamic

Biomedical EngineeringEngineering
3
Article|178 citations·2019
Human Intestinal Morphogenesis Controlled by Transepithelial Morphogen Gradient and Flow-Dependent Physical Cues in a Microengineered Gut-on-a-Chip
Woojung Shin, Christopher D. Hinojosa, Donald E. Ingber, Hyun Jung Kim
SJR Q1iScienceOA

We leveraged a human gut-on-a-chip (Gut Chip) microdevice that enables independent control of fluid flow and mechanical deformations to explore how physical cues and morphogen gradients influence intestinal morphogenesis. Both human intestinal Caco-2 and intestinal organoid-derived primary epithelial cells formed three-dimensional (3D) villi-like microarchitecture when exposed to apical and basal fluid flow; however, 3D morphogenesis did not occur and preformed villi-like structure involuted whe

Biomedical EngineeringEngineering
4
Review|166 citations·2022
3D in vitro morphogenesis of human intestinal epithelium in a gut-on-a-chip or a hybrid chip with a cell culture insert
Woojung Shin, Hyun Jung Kim
SJR Q1Nature ProtocolsOA

Human intestinal morphogenesis establishes 3D epithelial microarchitecture and spatially organized crypt-villus characteristics. This unique structure is necessary to maintain intestinal homeostasis by protecting the stem cell niche in the basal crypt from exogenous microbial antigens and their metabolites. Also, intestinal villi and secretory mucus present functionally differentiated epithelial cells with a protective barrier at the intestinal mucosal surface. Thus, re-creating the 3D epithelia

Biomedical EngineeringEngineering
5
Article|78 citations·2020
Spatiotemporal Gradient and Instability of Wnt Induce Heterogeneous Growth and Differentiation of Human Intestinal Organoids
Woojung Shin, Alexander Wu, So‐Youn Min, Yong Cheol Shin, Rachel Fleming, Sabine Eckhardt, Hyun Jung Kim
SJR Q1iScienceOA

In a conventional culture of three-dimensional human intestinal organoids, extracellular matrix hydrogel has been used to provide a physical space for the growth and morphogenesis of organoids in the presence of exogenous morphogens such as Wnt3a. We found that organoids embedded in a dome-shaped hydrogel show significant size heterogeneity in different locations inside the hydrogel. Computational simulations revealed that the instability and diffusion limitation of Wnt3a constitutively generate

OncologyMedicine
6
Article|27 citations·2020
Robust Formation of an Epithelial Layer of Human Intestinal Organoids in a Polydimethylsiloxane-Based Gut-on-a-Chip Microdevice
Woojung Shin, Yoko M. Ambrosini, Yong Cheol Shin, Alexander Wu, So‐Youn Min, Domin Koh, Sowon Park, Seung Kim, Hong Koh, Hyun Jung Kim
SJR Q1Frontiers in Medical TechnologyOA

Polydimethylsiloxane (PDMS) is a silicone polymer that has been predominantly used in a human organ-on-a-chip microphysiological system. The hydrophobic surface of a microfluidic channel made of PDMS often results in poor adhesion of the extracellular matrix (ECM) as well as cell attachment. The surface modification by plasma or UV/ozone treatment in a PDMS-based device produces a hydrophilic surface that allows robust ECM coating and the reproducible attachment of human intestinal immortalized

Biomedical EngineeringEngineering
7
Article|27 citations·2018
Pathomimetic modeling of human intestinal diseases and underlying host-gut microbiome interactions in a gut-on-a-chip
Woojung Shin, Hyun Jung Kim
SJR Q4Methods in cell biology
Biomedical EngineeringEngineering
8
Article|16 citations·2016
Hyaluronic acid-supported combination of water insoluble immunostimulatory compounds for anti-cancer immunotherapy
Woojung Shin, Hyun Jong Noh, Young‐Woock Noh, Sohyun Kim, Soong Ho Um, Yong Taik Lim
SJR Q1Carbohydrate Polymers
ImmunologyImmunology and Microbiology
9
Article|14 citations·2018
Sulfurization of hematite Fe2O3 and anatase TiO2 by annealing in H2S
Woojung Shin, Araceli Hernández-Granados, Wen-Hsi Huang, Hailin Hu, Meng Tao
SJR Q1Materials Chemistry and PhysicsOA
Biomedical EngineeringEngineering
10
Article|13 citations·2022
Single-cell transcriptomic mapping of intestinal epithelium that undergoes 3D morphogenesis and mechanodynamic stimulation in a gut-on-a-chip
Woojung Shin, Zhe Su, S. Stephen Yi, Hyun Jung Kim
SJR Q1iScienceOA

The human gut-on-a-chip has demonstrated <i>in vivo</i>-relevant cellular fidelity and physiological functions of Caco-2 intestinal epithelium compared to its static cultures. However, transcriptomic dynamics that controls the morphogenic and mechanodynamic perturbation of Caco-2 epithelium in a microphysiological culture remain elusive. Single-cell transcriptomic analysis revealed that a gut-on-a-chip culture drives three clusters that illustrate distinct gene expressions and their spatial repr

Biomedical EngineeringEngineering
11
Article|13 citations·2019
Low-cost spray-deposited ZrO2 for antireflection in Si solar cells
Woojung Shin, Wen-Hsi Huang, Meng Tao
SJR Q1Materials Chemistry and Physics
Electrical and Electronic EngineeringEngineering
12
Review|11 citations·2019
“Good Fences Make Good Neighbors”: How does the Human Gut Microchip Unravel Mechanism of Intestinal Inflammation?
Woojung Shin, Landon A. Hackley, Hyun Jung Kim
SJR Q1Gut MicrobesOA

A microengineered human gut-on-a-chip has demonstrated intestinal physiology, three-dimensional (3D) epithelial morphogenesis, and longitudinal host-microbiome interactions in vitro. The modular accessibility and modularity of the microphysiological gut-on-a-chip can lead to the identification of the seminal trigger in intestinal inflammation. By coupling microbial and immune cells in a spatiotemporal manner, we discovered that the maintenance of healthy epithelial barrier function is necessary

Biomedical EngineeringEngineering
13
Article|4 citations·2023
In Vitro Morphogenesis and Differentiation of Human Intestinal Epithelium in a Gut-on-a-Chip
Woojung Shin, Hyun Jung Kim
SJR Q4Methods in molecular biology
Biomedical EngineeringEngineering
14
Article|3 citations·2019
Derivation of primitive neural stem cells from human‐induced pluripotent stem cells
Woojung Shin, Ji‐Hye Seo, Hyun Woo Choi, Yean Ju Hong, Won Ji Lee, Jung Il Chae, Sung Joo Kim, Jeong-Woong Lee, Kwonho Hong, Hyuk Song, Chankyu Park, Jeong Tae
SJR Q2The Journal of Comparative Neurology

Human-induced pluripotent stem cells (hiPSCs) have facilitated studies on organ development and differentiation into specific lineages in in vitro systems. Although numerous studies have focused on cellular differentiation into neural lineage using hPSCs, most studies have initially evaluated embryoid body (EB) formation, eventually yielding terminally differentiated neurons with limited proliferation potential. This study aimed to establish human primitive neural stem cells (pNSCs) from exogene

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|3 citations·2016
Low-cost spray deposited ZrO<inf>2</inf> for passivation and antireflection on p-type Si
Woojung Shin, Laidong Wang, Meng Tao

In this study, we use low-cost spray deposition to study the possibility of using an earth-abundant ZrO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> film as a antireflection and passivation layer on p-type Si. Structural, optical and electrical properties of the spray-deposited ZrO2 film were investigated. Spray deposited ZrO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> is highly t

Electrical and Electronic EngineeringEngineering

Research Areas

Biomedical EngineeringMolecular BiologyElectrical and Electronic EngineeringOncologyMaterials ChemistryNeurology

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