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Yi-Ji Bang

Seoul National University · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Yi-Ji Bang's research lab focuses on host-microbe interactions, particularly the molecular mechanisms underlying vitamin A metabolism and its role in intestinal immune regulation. The lab investigates how host cells, especially intestinal epithelial and myeloid cells, sense and respond to the microbiota through signaling molecules like serum amyloid A (SAA) and retinol derivatives. Key research directions include the identification of host receptors (e.g., LRP1) that mediate nutrient delivery for immune cell function, the role of quorum sensing in pathogenic Vibrio species, and the regulation of antioxidant defenses in bacterial pathogenesis. The lab integrates structural biology, immunology, and microbiology to uncover host factors that shape mucosal immunity and microbial homeostasis.

vitamin A metabolismintestinal immunityserum amyloid Amicrobiota-host interactionquorum sensing inhibition

Research Overview

Papers
23
Total Citations
476
Papers (5y)
15
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
15total
2019
2021
2023
2024
2025
Citations per year (5y)
298total
20192021202320242025

Selected Papers

15
1
Article|92 citations·2021
Serum amyloid A delivers retinol to intestinal myeloid cells to promote adaptive immunity
Ye‐Ji Bang, Zehan Hu, Yun Li, Sureka Gattu, Kelly A. Ruhn, Prithvi Raj, Joachim Herz, Lora V. Hooper
SJR Q1ScienceOA

Vitamin A and its derivative retinol are essential for the development of intestinal adaptive immunity. Retinoic acid (RA)–producing myeloid cells are central to this process, but how myeloid cells acquire retinol for conversion to RA is unknown. Here, we show that serum amyloid A (SAA) proteins—retinol-binding proteins induced in intestinal epithelial cells by the microbiota—deliver retinol to myeloid cells. We identify low-density lipoprotein (LDL) receptor–related protein 1 (LRP1) as an SAA r

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|56 citations·2018
QStatin, a Selective Inhibitor of Quorum Sensing in Vibrio Species
Byoung Sik Kim, Song Yee Jang, Ye‐Ji Bang, Jungwon Hwang, Youngwon Koo, Kyung Ku Jang, Dongyeol Lim, Myung Hee Kim, Sang Ho Choi
SJR Q1mBioOA

ABSTRACT Pathogenic Vibrio species cause diseases in diverse marine animals reared in aquaculture. Since their pathogenesis, persistence, and survival in marine environments are regulated by quorum sensing (QS), QS interference has attracted attention as a means to control these bacteria in aquatic settings. A few QS inhibitors of Vibrio species have been reported, but detailed molecular mechanisms are lacking. Here, we identified a novel, potent, and selective Vibrio QS inhibitor, named QStatin

EndocrinologyBiochemistry, Genetics and Molecular Biology
3
Article|55 citations·2019
Epithelial retinoic acid receptor β regulates serum amyloid A expression and vitamin A-dependent intestinal immunity
Sureka Gattu, Ye‐Ji Bang, Mihir Pendse, Chaitanya Dende, Andrew L. Chara, Tamia Harris-Tryon, Yuhao Wang, Kelly A. Ruhn, Zheng Kuang, Shanthini Sockanathan, Lora V. Hooper
SJR Q1Proceedings of the National Academy of SciencesOA

Vitamin A is a dietary component that is essential for the development of intestinal immunity. Vitamin A is absorbed and converted to its bioactive derivatives retinol and retinoic acid by the intestinal epithelium, yet little is known about how epithelial cells regulate vitamin A-dependent intestinal immunity. Here we show that epithelial cell expression of the transcription factor retinoic acid receptor β (RARβ) is essential for vitamin A-dependent intestinal immunity. Epithelial RARβ activate

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|37 citations·2014
Characterization of the Vibrio vulnificus 1-Cys Peroxiredoxin Prx3 and Regulation of Its Expression by the Fe-S Cluster Regulator IscR in Response to Oxidative Stress and Iron Starvation
Jong Gyu Lim, Ye‐Ji Bang, Sang Ho Choi
SJR Q1Journal of Biological ChemistryOA

Peroxiredoxins (Prxs) are ubiquitous antioxidant enzymes that reduce toxic peroxides. A new Vibrio vulnificus Prx, named Prx3, was identified and characterized in this study. Biochemical and mutational analyses revealed that Prx3 reduces H 2 O 2 , utilizing glutaredoxin 3 (Grx3) and glutathione (GSH) as reductants, and requires only N-terminal peroxidatic cysteine for its catalysis. These results, combined with the monomeric size of Prx3 observed under non-reducing conditions, suggested that Prx

Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|34 citations·2019
Molecular basis for retinol binding by serum amyloid A during infection
Zehan Hu, Ye‐Ji Bang, Kelly A. Ruhn, Lora V. Hooper
SJR Q1Proceedings of the National Academy of SciencesOA

Serum amyloid A (SAA) proteins are strongly induced in the liver by systemic infection and in the intestine by bacterial colonization. In infected mice, SAA proteins circulate in association with the vitamin A derivative retinol, suggesting that SAAs transport retinol during infection. Here we illuminate a structural basis for the retinol-SAA interaction. In the bloodstream of infected mice, most SAA is complexed with high-density lipoprotein (HDL). However, we found that the majority of the cir

SurgeryMedicine
6
Article|34 citations·2024
Balancing Act of the Intestinal Antimicrobial Proteins on Gut Microbiota and Health
Ye Eun, Ye‐Ji Bang
SJR Q2The Journal of MicrobiologyOA

The human gut houses a diverse and dynamic microbiome critical for digestion, metabolism, and immune development, exerting profound effects on human health. However, these microorganisms pose a potential threat by breaching the gut barrier, entering host tissues, and triggering infections, uncontrolled inflammation, and even sepsis. The intestinal epithelial cells form the primary defense, acting as a frontline barrier against microbial invasion. Antimicrobial proteins (AMPs), produced by these

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|28 citations·2012
Distinct Characteristics of Two 2-Cys Peroxiredoxins of Vibrio vulnificus Suggesting Differential Roles in Detoxifying Oxidative Stress
Ye‐Ji Bang, Man Hwan Oh, Sang Ho Choi
SJR Q1Journal of Biological ChemistryOA

Peroxiredoxins (Prxs) are ubiquitous antioxidant enzymes reducing toxic peroxides. Two distinct 2-Cys Prxs, Prx1 and Prx2, were identified in Vibrio vulnificus, a facultative aerobic pathogen. Both Prxs have two conserved catalytic cysteines, CP and CR, but Prx2 is more homologous in amino acid sequences to eukaryotic Prx than to Prx1. Prx2 utilized thioredoxin A as a reductant, whereas Prx1 required AhpF. Prx2 contained GGIG and FL motifs similar to the motifs conserved in sensitive Prxs and ex

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|27 citations·2014
Distinct characteristics of OxyR2, a new OxyR‐type regulator, ensuring expression of Peroxiredoxin 2 detoxifying low levels of hydrogen peroxide in Vibrio vulnificus
Suyeon Kim, Ye‐Ji Bang, Dukyun Kim, Jong Gyu Lim, Man Hwan Oh, Sang Ho Choi
SJR Q1Molecular MicrobiologyOA

Two peroxiredoxins, Prx1 and Prx2, were previously identified in Vibrio vulnificus. Besides OxyR1, a homologue of Escherichia coli OxyR (EcOxyR), OxyR2 that shares low homology with EcOxyR was first identified in V. vulnificus. OxyR2 activated prx2 during aerobic growth, while OxyR1 activated prx1 only when exposed to exogenous H2O2. OxyR2 was oxidized to form a reversible C206 to C215 disulphide bond by sensing low levels of H2O2, which were insufficient to oxidize OxyR1, and only the oxidized

EndocrinologyBiochemistry, Genetics and Molecular Biology
9
Review|27 citations·2025
Aromatic Amino Acid Metabolites: Molecular Messengers Bridging Immune-Microbiota Communication
Hyun-Ki Shin, Ye‐Ji Bang
SJR Q1Immune NetworkOA

Aromatic amino acid (AAA) metabolites, derived from tryptophan, phenylalanine, and tyrosine through coordinated host and microbial metabolism, have emerged as critical modulators of immune function. We examine the complex journey of AAAs from dietary intake through intestinal absorption and metabolic transformation, highlighting the crucial role of host-microbe metabolic networks in generating diverse immunomodulatory compounds. This review provides a unique integrative perspective by mapping th

BiochemistryBiochemistry, Genetics and Molecular Biology
10
Article|22 citations·2019
Small-molecule inhibitor of HlyU attenuates virulence of Vibrio species
Zee-Won Lee, Byoung Sik Kim, Kyung Ku Jang, Ye‐Ji Bang, Suhyeon Kim, Nam‐Chul Ha, Young Hyun Jung, Hyun Jik Lee, Ho Jae Han, Jong‐Seo Kim, Jeesoo Kim, Pramod K. Sahu
SJR Q1Scientific ReportsOA

Increasing antibiotic resistance has led to the development of new strategies to combat bacterial infection. Anti-virulence strategies that impair virulence of bacterial pathogens are one of the novel approaches with less selective pressure for developing resistance than traditional strategies that impede viability. In this study, a small molecule CM14 [N-(4-oxo-4H-thieno[3,4-c]chromen-3-yl)-3-phenylprop-2-ynamide] that inhibits the activity of HlyU, a transcriptional regulator essential for the

EndocrinologyBiochemistry, Genetics and Molecular Biology
11
Article|15 citations·2016
OxyR2 Functions as a Three-state Redox Switch to Tightly Regulate Production of Prx2, a Peroxiredoxin of Vibrio vulnificus
Ye‐Ji Bang, Zee-Won Lee, Dukyun Kim, Inseong Jo, Nam‐Chul Ha, Sang Ho Choi
SJR Q1Journal of Biological ChemistryOA

The bacterial transcriptional regulator OxyR is known to function as a two-state redox switch. OxyR senses cellular levels of H2O2 via a "sensing cysteine" that switches from the reduced to a disulfide state upon H2O2 exposure, inducing the expression of antioxidant genes. The reduced and disulfide states of OxyR, respectively, bind to extended and compact regions of DNA, where the reduced state blocks and the oxidized state allows transcription and further induces target gene expression by inte

EndocrinologyBiochemistry, Genetics and Molecular Biology
12
Article|15 citations·2017
The hydrogen peroxide hypersensitivity of OxyR2 in Vibrio vulnificus depends on conformational constraints
Inseong Jo, Dukyun Kim, Ye‐Ji Bang, Jinsook Ahn, Sang Ho Choi, Nam‐Chul Ha
SJR Q1Journal of Biological ChemistryOA

Most Gram-negative bacteria respond to excessive levels of H<sub>2</sub>O<sub>2</sub> using the peroxide-sensing transcriptional regulator OxyR, which can induce the expression of antioxidant genes to restore normality. <i>Vibrio vulnificus</i> has two distinct OxyRs (OxyR1 and OxyR2), which are sensitive to different levels of H<sub>2</sub>O<sub>2</sub> and induce expression of two different peroxidases, Prx1 and Prx2. Although OxyR1 has both high sequence similarity and H<sub>2</sub>O<sub>2</s

EndocrinologyBiochemistry, Genetics and Molecular Biology
13
Article|13 citations·2023
CarRS Two-Component System Essential for Polymyxin B Resistance of Vibrio vulnificus Responds to Multiple Host Environmental Signals
Duhyun Ko, Dayoung Sung, Tae Young Kim, Garam Choi, Ye‐Ji Bang, Sang Ho Choi
SJR Q1Microbiology SpectrumOA

operons regardless of phosphorylation, phosphorylation of CarR is required for the regulation of the operons, resulting in the PMB resistance. Furthermore, the CarRS TCS determines the resistance of V. vulnificus to bile salts and acidic pH by differentially regulating its own activation state in response to these environmental stresses. Altogether, the CarRS TCS responds to multiple host-related signals, and thus could enhance the survival of V. vulnificus within the host, leading to successful

EndocrinologyBiochemistry, Genetics and Molecular Biology
14
Review|12 citations·2023
Vitamin A: a key coordinator of host-microbe interactions in the intestine
Ye‐Ji Bang
SJR Q1BMB ReportsOA

The human intestine is home to a dense community of microbiota that plays a key role in human health and disease. Nutrients are essential regulators of both host and microbial physiology and function as key coordinators of host-microbe interactions. Therefore, understanding the specific roles and underlying mechanisms of each nutrient in regulating the host-microbe interactions will be essential in developing new strategies for improving human health through microbiota and nutrient intervention.

Nutrition and DieteticsNursing
15
Article|4 citations·2024
Discovery of a Small-Molecule Inhibitor Targeting the Biofilm Regulator BrpT in Vibrio vulnificus
Wonwoo Choi, Hojun Lee, Qiyao Wang, Ye‐Ji Bang, Sang‐Ho Choi
SJR Q2Journal of Microbiology and BiotechnologyOA

<i>Vibrio vulnificus</i>, an opportunistic human pathogen, employs biofilm formation as a key survival and virulence mechanism. BrpT, a transcriptional regulator, is essential for <i>V. vulnificus</i> biofilm development by regulating the expression of biofilm-related genes. In this study, we aimed to identify a small molecule inhibitor of BrpT to combat <i>V. vulnificus</i> biofilm formation. High-throughput screening of 7,251 compounds using an <i>Escherichia coli</i> reporter strain carrying

EndocrinologyBiochemistry, Genetics and Molecular Biology

Research Areas

EndocrinologyMolecular BiologySurgeryBiochemistryNutrition and DieteticsComputational Mechanics

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