Skip to main content

Young-Kyu Yoon

Korea Advanced Institute of Science and Technology · Biochemistry, Genetics and Molecular Biology

About the Lab

Professor Young-Kyu Yoon's research lab specializes in cutting-edge computational and optical imaging techniques for high-resolution, large-volume visualization of biological systems, particularly in neuroscience and developmental biology. The lab develops innovative imaging modalities such as sparse decomposition light-field microscopy and self-supervised denoising methods to achieve single-cell resolution in dynamic neuronal activity mapping. It also pioneers advanced imaging technologies like PICASSO for multi-color fluorescence unmixing and whole-body expansion microscopy for nanoscale imaging of vertebrate organisms. The lab integrates principles from electrical engineering, computational neuroscience, and bioengineering to push the limits of optical imaging in complex biological specimens.

computational imagingvoltage imagingexpansion microscopymulti-color unmixingneural imaging

Research Overview

Papers
53
Total Citations
2,455
Papers (5y)
26
Primary Field
Biochemistry, Genetics and Molecular Biology

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
26total
2022
2023
2024
2025
2026
Citations per year (5y)
234total
20222023202420252026

Selected Papers

15
1
Article|837 citations·2014
Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
Robert Prevedel, Young‐Gyu Yoon, Maximilian Hoffmann, Nikita Pak, Gordon Wetzstein, Saul Kato, Tina Schrödel, Ramesh Raskar, Manuel Zimmer, Edward S. Boyden, Alipasha Vaziri
SJR Q1Nature MethodsOA
BiophysicsBiochemistry, Genetics and Molecular Biology
2
Article|406 citations·2017
Iterative expansion microscopy
Jae‐Byum Chang, Fei Chen, Young‐Gyu Yoon, Erica E. Jung, Hazen P. Babcock, Jeong Seuk Kang, Shoh Asano, Ho‐Jun Suk, Nikita Pak, Paul W. Tillberg, Asmamaw T. Wassie, Dawen Cai
SJR Q1Nature MethodsOA
BiophysicsBiochemistry, Genetics and Molecular Biology
3
Article|345 citations·2018
A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters
Kiryl D. Piatkevich, Erica E. Jung, Christoph Straub, Changyang Linghu, Demian Park, Ho‐Jun Suk, Daniel R. Hochbaum, Daniel Goodwin, Eftychios A. Pnevmatikakis, Nikita Pak, Takashi Kawashima, Chao-Tsung Yang
SJR Q1Nature Chemical Biology
Cellular and Molecular NeuroscienceNeuroscience
4
Article|292 citations·2009
Analysis and Design of Voltage-Controlled Oscillator Based Analog-to-Digital Converter
Jaewook Kim, Taekwang Jang, Young‐Gyu Yoon, SeongHwan Cho
SJR Q1IEEE Transactions on Circuits and Systems I Regular Papers

A voltage-controlled oscillator (VCO) based analog-to-digital converter (ADC) is a time-based architecture with a first-order noise-shaping property, which can be implemented using a VCO and digital circuits. This paper analyzes the performance of VCO-based ADCs in the presence of nonidealities such as jitter, nonlinearity, mismatch, and the metastability of D flip-flops. Based on this analysis, design criteria for determining parameters for VCO-based ADCs are described. In addition, a digital c

Biomedical EngineeringEngineering
5
Article|108 citations·2022
PICASSO allows ultra-multiplexed fluorescence imaging of spatially overlapping proteins without reference spectra measurements
Junyoung Seo, Yeonbo Sim, Jeewon Kim, H Kim, In Cho, Hoyeon Nam, Young‐Gyu Yoon, Jae‐Byum Chang
SJR Q1Nature CommunicationsOA

Ultra-multiplexed fluorescence imaging requires the use of spectrally overlapping fluorophores to label proteins and then to unmix the images of the fluorophores. However, doing this remains a challenge, especially in highly heterogeneous specimens, such as the brain, owing to the high degree of variation in the emission spectra of fluorophores in such specimens. Here, we propose PICASSO, which enables more than 15-color imaging of spatially overlapping proteins in a single imaging round without

BiophysicsBiochemistry, Genetics and Molecular Biology
6
Article|73 citations·2020
Sparse decomposition light-field microscopy for high speed imaging of neuronal activity
Young‐Gyu Yoon, Zeguan Wang, Nikita Pak, Demian Park, Peilun Dai, Jeong Seuk Kang, Ho‐Jun Suk, Panagiotis Symvoulidis, Burcu Guner‐Ataman, Kai Wang, Edward S. Boyden
SJR Q1OpticaOA

One of the major challenges in large scale optical imaging of neuronal activity is to simultaneously achieve sufficient temporal and spatial resolution across a large volume. Here, we introduce sparse decomposition light-field microscopy (SDLFM), a computational imaging technique based on light-field microscopy (LFM) that takes algorithmic advantage of the high temporal resolution of LFM and the inherent temporal sparsity of spikes to improve effective spatial resolution and signal-to-noise rati

BiophysicsBiochemistry, Genetics and Molecular Biology
7
Article|69 citations·2023
Statistically unbiased prediction enables accurate denoising of voltage imaging data
Minho Eom, Seungjae Han, Pojeong Park, Gyuri Kim, Eun‐Seo Cho, Jueun Sim, Kang‐Han Lee, Seonghoon Kim, He Tian, Urs L. Böhm, Eric Lowet, Hua-an Tseng
SJR Q1Nature MethodsOA

Here we report SUPPORT (statistically unbiased prediction utilizing spatiotemporal information in imaging data), a self-supervised learning method for removing Poisson-Gaussian noise in voltage imaging data. SUPPORT is based on the insight that a pixel value in voltage imaging data is highly dependent on its spatiotemporal neighboring pixels, even when its temporally adjacent frames alone do not provide useful information for statistical prediction. Such dependency is captured and used by a conv

Electrical and Electronic EngineeringEngineering
8
Article|59 citations·2008
A Time-Based Bandpass ADC Using Time-Interleaved Voltage-Controlled Oscillators
Young‐Gyu Yoon, Jaewook Kim, Taekwang Jang, SeongHwan Cho
SJR Q1IEEE Transactions on Circuits and Systems I Regular Papers

In this paper, a bandpass analog-to-digital converter (ADC) based on time-interleaved oversampled ADC is introduced. Unlike previous delta-sigma bandpass ADCs that require accurate digital-to-analog converters and high-speed analog circuits, the proposed architecture provides bandpass function by time-interleaving first-order voltage-controlled-oscillator (VCO)-based ADCs. The use of VCO-based ADC has the advantage that its resolution is determined by the time resolution rather than the voltage

Biomedical EngineeringEngineering
9
Preprint|33 citations·2021
Nanoscale resolution imaging of the whole mouse embryos and larval zebrafish using expansion microscopy
Jueun Sim, Chan E Park, In Cho, Kyeongbae Min, Minho Eom, Seungjae Han, Hyungju Jeon, Hyun-Ju Cho, Eun‐Seo Cho, Ajeet Kumar, Yosep Chong, Jeong Seuk Kang
bioRxiv (Cold Spring Harbor Laboratory)OA

ABSTRACT Nanoscale resolution imaging of whole vertebrates is required for a systematic understanding of human diseases, but this has yet to be realized. Expansion microscopy (ExM) is an attractive option for achieving this goal, but the expansion of whole vertebrates has not been demonstrated due to the difficulty of expanding hard body components. Here, we demonstrate whole-body ExM, which enables nanoscale resolution imaging of anatomical structures, proteins, and endogenous fluorescent prote

BiophysicsBiochemistry, Genetics and Molecular Biology
10
Article|24 citations·2009
A 1.5-GHz 63dB SNR 20mW direct RF sampling bandpass VCO-based ADC in 65nm CMOS
Young‐Gyu Yoon, SeongHwan Cho

This paper presents a bandpass ADC which exploits enhanced time-resolution of a deep submicron CMOS process. Unlike conventional bandpass ADCs that rely on voltage resolution and Gm-LC filters, the proposed ADC employs time-interleaved voltage-controlled oscillators that enable frequency tunable bandstop noise shaping property without a feedback loop. The ADC implemented in 65nm CMOS achieves SNR of 63.3dB for 1MHz signal located at 1.5GHz, while consuming 19.6mW from 1.2V supply.

Biomedical EngineeringEngineering
11
Article|22 citations·2017
Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration
Young‐Gyu Yoon, Peilun Dai, Jeremy Wohlwend, Jae‐Byum Chang, Adam Marblestone, Edward S. Boyden
SJR Q3Frontiers in Computational NeuroscienceOA

We here introduce and study the properties, via computer simulation, of a candidate automated approach to algorithmic reconstruction of dense neural morphology, based on simulated data of the kind that would be obtained via two emerging molecular technologies-expansion microscopy (ExM) and <i>in-situ</i> molecular barcoding. We utilize a convolutional neural network to detect neuronal boundaries from protein-tagged plasma membrane images obtained via ExM, as well as a subsequent supervoxel-mergi

BiophysicsBiochemistry, Genetics and Molecular Biology
12
Article|14 citations·2025
Self-supervised video processing with self-calibration on an analogue computing platform based on a selector-less memristor array
Hakcheon Jeong, Seungjae Han, See‐On Park, Tae Ryong Kim, Jongmin Bae, Taehwan Jang, Yoonho Cho, Seokho Seo, Hyun-Jun Jeong, Seungwoo Park, Taehoon Park, J.S. Oh
SJR Q1Nature Electronics
Electrical and Electronic EngineeringEngineering
13
Article|12 citations·2009
A linearization technique for voltage-controlled oscillator-based ADC
Young‐Gyu Yoon, Minchang Cho, SeongHwan Cho

In this paper, a linearization technique for voltage-controlled oscillator (VCO)-based analog-to-digital converter (ADC) is presented. Even order harmonics are canceled by using pseudo-differential architecture with two identical VCO-based ADCs. The effect of cancelation technique is verified through simulation with a prototype designed in 0.18μm CMOS technology and verilog. The CMOS ring VCO consumes about 280μW of power in average and the digital counter is implemented in verilog. With the sam

Biomedical EngineeringEngineering
14
Article|11 citations·2011
Monitoring the depth of anesthesia from rat EEG using modified Shannon entropy analysis
Young‐Gyu Yoon, Tae-Ho Kim, Dae-Woong Jeong, Sang Hyun Park

In this paper, an entropy based method for quantifying the depth of anesthesia from rat EEG is presented. The proposed index for the depth of anesthesia called modified Shannon entropy (MShEn) is based on Shannon entropy (ShEn) and spectral entropy (SpEn) which are widely used for analyzing non-stationary signals. Discrimination power (DP), as a performance indicator for indexes, is defined and used to derive the final index for the depth of anesthesia. For experiment, EEG from anesthetized rats

Anesthesiology and Pain MedicineMedicine
15
Article|11 citations·2025
Nanoscale Resolution Imaging of Whole Mouse Embryos Using Expansion Microscopy
Jueun Sim, Chan E Park, In Cho, Kyeongbae Min, Minho Eom, Seungjae Han, Hyungju Jeon, Eun‐Seo Cho, Yunjeong Lee, Young Hyun Yun, Sungho Lee, Deok-Hyeon Cheon
SJR Q1ACS Nano

Nanoscale imaging of whole vertebrates is essential for the systematic understanding of human diseases, yet this goal has not yet been achieved. Expansion microscopy (ExM) is an attractive option for accomplishing this aim; however, the expansion of even mouse embryos at mid- and late-developmental stages, which have fewer calcified body parts than adult mice, is yet to be demonstrated due to the challenges of expanding calcified tissues. Here, we introduce a state-of-the-art ExM technique, term

Structural BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

BiophysicsElectrical and Electronic EngineeringBiomedical EngineeringCognitive NeuroscienceMolecular BiologyCellular and Molecular Neuroscience

Dive deeper into Young-Kyu Yoon's research on Nubint

Open this lab's papers in the app to read with AI, summarize, and cite in your writing.