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Youngnim Choi

Seoul National University · Dentistry

About the Lab

Professor Youngnim Choi's research lab focuses on the immunological and molecular mechanisms underlying chronic inflammatory diseases of the oral cavity, particularly periodontitis, Sjögren’s syndrome, and oral lichen planus. The lab investigates host-microbe interactions, dysregulated immune responses, and the role of lymphocytes and microbiota in tissue destruction and autoimmunity. A key emphasis is placed on identifying early diagnostic biomarkers and understanding the pathogenic pathways that drive irreversible tissue damage, with translational goals in mind for near-patient diagnostics and targeted therapies.

oral immunologymicrobiomeautoimmunityperiodontitischronic inflammation

Research Overview

Papers
134
Total Citations
4,011
Papers (5y)
18
Primary Field
Dentistry

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
18total
2022
2023
2024
2025
2026
Citations per year (5y)
108total
20222023202420252026

Selected Papers

15
1
Article|224 citations·2010
The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer
Jongsik Chun, Kap Y Kim, Jae‐Hak Lee, Youngnim Choi
SJR Q1BMC MicrobiologyOA

BACKGROUND: Although mice have long served as an animal model for periodontitis, information on the composition of their indigenous oral microbiota is limited. The aim of the current study was to characterize mouse oral bacterial flora by applying extensive parallel pyrosequencing using the latest model pyrosequencer, a Roche/454 Genome Sequencer FLX Titanium. In addition, the effect of Toll-like receptor (TLR) 2 deficiency on oral microbiota was evaluated. RESULTS: Eight oral bacterial communit

PeriodonticsDentistry
2
Article|185 citations·2001
Osteoclastogenesis is enhanced by activated B cells but suppressed by activated CD8+ T cells
Youngnim Choi, Kyung Mi Woo, Seong‐Hee Ko, Yoon Jung Lee, Su‐Jin Park, Hyun‐Man Kim, Byoung S. Kwon
SJR Q1European Journal of Immunology

Host immune response is known to contribute to the progression of periodontitis, and alveolar bone destruction in periodontitis is associated with enhanced osteoclast activity. Therefore, we evaluated the roles of activated lymphocyte subsets in osteoclastogenesis. Osteoclast precursors were co-cultured with activated lymphocytes (B, CD4(+) T, CD8(+) T) in the presence of either macrophage colony-stimulating factor (M-CSF) alone or M-CSF plus soluble receptor activator of NF-kappaB ligand (sRANK

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Review|160 citations·2014
Bacterial invasion and persistence: critical events in the pathogenesis of periodontitis?
Suk Ji, Yun Choi, Youngnim Choi
SJR Q1Journal of Periodontal ResearchOA

Periodontitis is chronic inflammation of the periodontium caused by the host's inflammatory response to plaque biofilm, which destroys tooth-supporting soft and hard tissues. Periodontitis is a complex disease that involves interactions among three main features - microbial challenge, the host immune response, and environmental and genetic risk factors - in its pathogenesis. Although periodontitis has been regarded as the result of hyperimmune or hyperinflammatory responses to plaque bacteria, r

PeriodonticsDentistry
4
Article|138 citations·2007
Susceptibility of various oral bacteria to antimicrobial peptides and to phagocytosis by neutrophils
Suk Ji, Jae‐Eun Hyun, E. Park, Bok Luel Lee, Kyuseok Kim, Youngnim Choi
SJR Q1Journal of Periodontal Research

BACKGROUND AND OBJECTIVE: The aim of this study was to compare the susceptibility of nonperiodontopathic and periodontopathic bacteria to major defense mechanisms for bacterial clearance in gingival sulcus. MATERIAL AND METHODS: Twenty strains of 13 oral bacterial species were studied for their susceptibility to phagocytosis by human neutrophils and to the antimicrobial peptides LL-37 and human beta defensin-3. The minimum inhibitory concentrations of LL-37 and human beta defensin-3 were determi

PeriodonticsDentistry
5
Article|110 citations·2007
Innate immune responses of gingival epithelial cells to nonperiodontopathic and periodontopathic bacteria
Suk Ji, Y. Kim, Byung‐Moo Min, Seung Hyun Han, Youngnim Choi
SJR Q1Journal of Periodontal Research

BACKGROUND AND OBJECTIVE: We have previously reported different susceptibilities of periodontopathic and nonperiodontopathic bacteria to antimicrobial peptides and phagocytosis by neutrophils. Differences between the two groups of bacteria may exist also in their ability to induce immune responses from the host. Therefore, we evaluated the effects of various oral bacteria on innate immune responses by gingival epithelial cells. MATERIAL AND METHODS: HOK-16B cells were cocultured with live or lys

PeriodonticsDentistry
6
Review|81 citations·2015
Point-of-care diagnosis of periodontitis using saliva: technically feasible but still a challenge
Suk Ji, Youngnim Choi
SJR Q1Frontiers in Cellular and Infection MicrobiologyOA

Periodontitis is a chronic inflammation of the periodontium caused by persistent bacterial infection that leads to the breakdown of connective tissue and bone. Because the ability to reconstruct the periodontium is limited after alveolar bone loss, early diagnosis and intervention should be the primary goals of periodontal treatment. However, periodontitis often progresses without noticeable symptoms, and many patients do not seek professional dental care until the periodontal destruction progre

PeriodonticsDentistry
7
Review|80 citations·2017
The microbiology of oral lichen planus: Is microbial infection the cause of oral lichen planus?
Keumjin Baek, Youngnim Choi
SJR Q1Molecular Oral Microbiology

Oral lichen planus (OLP) is a variant of lichen planus (LP), a common chronic mucocutaneous inflammatory disease. Cutaneous lesions of LP are self-limiting, but OLP lesions are non-remissive, alternating periods of exacerbation and quiescence, and only symptomatic treatments exist for OLP. The precise etiology and pathogenesis of OLP are hardly understood, which is a major obstacle to the development of new therapeutics for this disease. OLP is considered a T-cell-mediated inflammatory disease.

PeriodonticsDentistry
8
Article|63 citations·2020
Dysbiotic oral microbiota and infected salivary glands in Sjögren’s syndrome
Jehan Alam, Ahreum Lee, Junho Lee, Dong Il Kwon, Heekyung Park, Jung‐Hyun Park, Sumin Jeon, Keumjin Baek, Jennifer Lee, Sung‐Hwan Park, Youngnim Choi
SJR Q1PLoS ONEOA

Key events in the pathogenesis of Sjӧgren syndrome (SS) include the change of salivary gland epithelial cells into antigen-presenting cell-like phenotypes and focal lymphocytic sialadenitis (FLS). However, what triggers these features in SS is unknown. Dysbiosis of the gut and oral microbiomes is a potential environmental factor in SS, but its connection to the etiopathogenesis of SS remains unclear. This study aimed to characterize the oral microbiota in SS and to investigate its potential role

PhysiologyMedicine
9
Article|62 citations·2005
Interaction of Fas Ligand and Fas Expressed on Osteoclast Precursors Increases Osteoclastogenesis
Hyewon Park, Youn‐Kwan Jung, Ok-Jin Park, Yeon Ju Lee, Je‐Yong Choi, Youngnim Choi
SJR Q1The Journal of ImmunologyOA

We incidentally found that osteoclast precursors and mature osteoclasts express Fas ligand (FasL) as well as Fas, which was confirmed by flow cytometry, immunofluorescent staining, and RT-PCR. The aim of this study was to determine the role of FasL in differentiation and cell death of osteoclasts. To study the role of FasL in osteoclastogenesis, neutralizing anti-FasL mAb or rFasL was added during receptor activator of NF-kappaB ligand (RANKL)-induced osteoclastogenesis using bone marrow-derived

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|58 citations·2010
Presence ofPorphyromonas gingivalisand plasma cell dominance in gingival tissues with periodontitis
YC Kim, Yu Ko, S. J. Hong, KY Kim, Young Ho Lee, Chanhee Chae, Youngnim Choi
SJR Q1Oral Diseases

OBJECTIVE: Porphyromonas gingivalis can invade and survive within its host epithelial cells. The aim of this study was to test our hypothesis that persistent presence of intracellular periodontal pathogens in gingival tissue causes the chronic inflammation and that an inappropriate immune response is a risk factor for periodontitis. METHODS: Together with the presence of P. gingivalis, the distribution of B cells, plasma cells, and CD4(+), CD8(+), and FOXP3(+) regulatory T cells was evaluated in

PeriodonticsDentistry
11
Article|55 citations·1996
Clonal evolution in B-lineage acute lymphoblastic leukemia by contemporaneous VH-VH gene replacements and VH-DJH gene rearrangements
Youngnim Choi, SJ Greenberg, TL Du, PM Ward, P. M. Overturf, Brecher Ml, Mark Ballow
SJR Q1Blood

B-cell acute lymphoblastic leukemia (B-ALL), more frequently than any other B-lineage neoplasm, exhibits oligoclonal Ig heavy chain (IgH) gene rearrangement in 15% to 43% of all cases studied. To study the molecular processes that promote multiple IgH rearrangements, a comprehensive sequence analysis of a B-ALL case was performed in which seven clonal IgH gene rearrangements were identified. The genetic profiles suggested that a single leukemic progenitor clone evolved into several subclones thr

Radiology, Nuclear Medicine and ImagingMedicine
12
Article|51 citations·2016
Detection of autoantibodies against aquaporin-5 in the sera of patients with primary Sjögren’s syndrome
Jehan Alam, Jung Hee Koh, Nahyun Kim, Seung‐Ki Kwok, Sung‐Hwan Park, Yeong Wook Song, Kyungpyo Park, Youngnim Choi
SJR Q2Immunologic ResearchOA

The pathophysiology of exocrine dysfunction observed in Sjögren's syndrome (SS) is not fully understood. The purpose of this study was to investigate whether autoantibodies against human AQP5 are present in the sera of SS patients. Frozen sections of mouse submandibular salivary glands, CHO cells over-expressing a human AQP5-GFP fusion protein or GFP, and MDCK cells over-expressing AQP5 were used in the indirect immunofluorescence assay to detect anti-AQP5 autoantibodies in the sera from patient

PhysiologyMedicine
13
Article|48 citations·2015
Association of the invasion ability ofPorphyromonas gingivaliswith the severity of periodontitis
Keum Jin Baek, Suk Ji, Yong Cheol Kim, Youngnim Choi
SJR Q1VirulenceOA

Porphyromonas gingivalis is one of the well-characterized periodontal pathogens involved in periodontitis. The invasive and proteolytic activities of P. gingivalis clinical isolates have been shown to be associated with heterogenic virulence, as determined in a mouse abscess model. The aims of the present study were to identify a P. gingivalis strain with a low virulence among clinical isolates, based on its invasive ability and cytokine proteolytic activities, and to explore the preferential de

PeriodonticsDentistry
14
Article|45 citations·2017
Complex Intratissue Microbiota Forms Biofilms in Periodontal Lesions
Keumjin Baek, Suk Ji, Youngnim Choi
SJR Q1Journal of Dental ResearchOA

Periodontitis is caused by dysbiotic subgingival bacterial communities that may lead to increased bacterial invasion into gingival tissues. Although shifts in community structures associated with transition from health to periodontitis have been well characterized, the nature of bacteria present within the gingival tissue of periodontal lesions is not known. To characterize microbiota within tissues of periodontal lesions and compare them with plaque microbiota, gingival tissues and subgingival

PeriodonticsDentistry
15
Article|43 citations·2003
B cells activated in the presence of Th1 cytokines inhibit osteoclastogenesis
Youngnim Choi, Jeong Jae Kim
SJR Q1Experimental & Molecular MedicineOA

Host immune response has been considered as an important disease-modifying factor of periodontitis, however, which immune cell(s) or factor(s) are involved in the destruction of periodontium remains unclear. Previously, we reported that osteoclastogenesis is enhanced by activated B cells but suppressed by activated CD8+ T cells. We present new data that B cells activated in the presence of Th1 cytokines inhibit osteoclastogenesis. Purified murine B cells were activated with anti-IgD mAb, IL-4, a

Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

PeriodonticsMolecular BiologyPhysiologyImmunologyPulmonary and Respiratory MedicineMicrobiology

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