Yun Jung Choi
Yonsei University · Medicine
About the Lab
Professor Yun Jung Choi's research lab focuses on interdisciplinary biomedical and materials science research, spanning computational biology, systems biology, and advanced materials for energy applications. The lab develops machine learning and bioinformatics approaches to predict disease outcomes and identify differentially regulated genes in complex biological systems, particularly in infectious diseases and neurodevelopmental disorders. It also investigates functional materials such as covalent organic frameworks (COFs) for efficient hydrogen storage, with a focus on ion-doping strategies to enhance adsorption properties. The integration of computational modeling with experimental validation defines the lab’s unique approach to solving challenges in precision medicine and sustainable energy.
Research Overview
Research Output Trend
Figures are computed from collected data and may differ slightly.
Selected Papers
15The rapid spread of COVID-19 has resulted in the shortage of medical resources, which necessitates accurate prognosis prediction to triage patients effectively. This study used the nationwide cohort of South Korea to develop a machine learning model to predict prognosis based on sociodemographic and medical information. Of 10,237 COVID-19 patients, 228 (2.2%) died, 7772 (75.9%) recovered, and 2237 (21.9%) were still in isolation or being treated at the last follow-up (April 16, 2020). The Cox pr
MOTIVATION: The power of a microarray experiment derives from the identification of genes differentially regulated across biological conditions. To date, differential regulation is most often taken to mean differential expression, and a number of useful methods for identifying differentially expressed (DE) genes or gene sets are available. However, such methods are not able to identify many relevant classes of differentially regulated genes. One important example concerns differentially co-expre
MARPE can be used as an effective tool for correcting maxillomandibular transverse discrepancy, showing stable outcomes 1 year after expansion.
The molecular basis of programmed cell death (PCD) of neurons during early metamorphic development of the central nervous system (CNS) in Drosophila melanogaster are largely unknown, in part owing to the lack of appropriate model systems. Here, we provide evidence showing that a group of neurons (vCrz) that express neuropeptide Corazonin (Crz) gene in the ventral nerve cord of the larval CNS undergo programmed death within 6 hours of the onset of metamorphosis. The death was prevented by targete
Toll-like receptors (TLRs) associate with adaptor molecules (MyD88, Mal/TIRAP, TRAM, and TRIF) to mediate signaling of host-microbial interaction. For instance, TLR4 utilizes the combination of both Mal/TIRAP-MyD88 (MyD88-dependent pathway) and TRAM-TRIF (MyD88-independent pathway). However, TLR5, the specific receptor for flagellin, is known to utilize only MyD88 to elicit inflammatory responses, and an involvement of other adaptor molecules has not been suggested in TLR5-dependent signaling. H
The most stable H2 adsorption on pure covalent organic frameworks (COFs) occurs near O atoms, but its binding energy (∼0.05eV) is not sufficient to satisfy the minimum value (0.24eV) required for practical applications. Meanwhile, Li and Mg ion-decorated COFs have hydrogen adsorption energies of 0.28 and 0.30eV, respectively, and their saturated hydrogen storage capacities exceed the DOE target (6.5wt%). Also the effect of some counterions on hydrogen storage has been explored. Moreover, doped i
We report that the novel covalent organic frameworks (COFs) are capable of reversibly providing an extremely high uptake capacity of carbon dioxide at room temperature. These COFs are designed via the combination of ab initio calculations and force-field calculations. For this goal, we explore the adsorption sites of carbon dioxide on COFs, their porosity, as well as carbon dioxide adsorption isotherms. We identify the binding sites and energies of CO2 on COFs using ab initio calculations and ob
OBJECTIVE: To test the hypothesis that periodontal changes are similar between proclined and minimal-changed mandibular incisor position groups during presurgical orthodontic treatment for Class III orthognathic surgery. MATERIALS AND METHODS: The following measurements were performed before and after presurgical orthodontic treatment of 75 patients (proclination group, 39 subjects; minimal-change group, 36 subjects): clinical crown length, sulcus and bone probing depths, and width of attached g
Spin–orbit density functional theory method implemented in the NWCHEM program package has been employed with the shape-consistent relativistic effective core potentials to calculate spectroscopic constants (bond lengths, frequencies, and dissociation energies) and estimate spin–orbit effects for 6th(Tl–At)- and 7th(113–117)-row element monohydrides. Results calculated with local density approximation and gradient-corrected approximation of the exchange-correlation functional are usually similar
TMJ morphology differed across diverse skeletal cephalometric patterns. The fossa length and height were affected by the interactions of the vertical and sagittal skeletal patterns.
Proteolytic modification of pattern recognition receptors and their signaling adaptor molecules has recently emerged as an essential cellular event to regulate immune and inflammatory responses. Here we show that the TIR domain containing adaptor-inducing interferon-beta (TRIF), an adaptor molecule mediating TLR3 signaling and MyD88-independent signaling of TLR4, plays an inhibitory role in TLR5-elicited responses by inducing proteolytic degradation of TLR5. TRIF overexpression in human embryoni
Defective IL-10 allele is a risk factor for intestinal inflammation. Indeed, IL-10(-/-) mice are predisposed to spontaneous colitis in the presence of intestinal microbiota, indicating that microbial factors contribute to developing intestinal inflammation. By recognizing flagellin, TLR5 plays a quintessential role in microbial recognition in intestinal epithelial cells. Here, we treated flagellin (1.0 μg/mouse/d) in mouse colon and found that it elicited colonic inflammation in IL-10(-/-) mice,
BACKGROUND: The lack of anti-fibrotic agents targeting intestinal fibrosis is a large unmet need in inflammatory bowel diseases, including Crohn's disease and ulcerative colitis. Previous studies have found that perinatal tissue (umbilical cord, UC; placenta, PL)-derived mesenchymal stem cells (MSCs) reduce fibrosis in several organs. However, their effects on human intestinal fibrosis are poorly understood. This study investigated the anti-fibrogenic properties and mechanisms of MSCs derived fr
Research Areas
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