Skip to main content

Min‐Soo Kim

Yonsei University · 医学

研究室紹介

Professor Min-Soo Kim's research lab focuses on the systems-level understanding of microbial physiology and population dynamics under stress, particularly in response to antibiotics and nutrient limitation. The lab investigates stochastic behaviors in bacterial populations, including persistence, survival during starvation, and nutrient sequestration mechanisms, using advanced microfluidic and single-cell technologies. A central theme is the integration of quantitative microbiology with systems biology to uncover principles governing bacterial tolerance, extinction, and adaptation. The lab also explores the physiological and biophysical basis of antibiotic persistence and intracellular homeostasis, with implications for improving antimicrobial therapies and understanding microbial resilience.

antibiotic persistencebacterial population dynamicsstarvation survivalnutrient sequestrationmicrofluidic systems

Research Overview

Papers
461
Total Citations
6,123
Papers (5y)
94
Primary Field
医学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
94total
2022
2023
2024
2025
2026
Citations per year (5y)
663total
20222023202420252026

Selected Papers

15
1
Article|135 citations·2018
Antibiotic-induced population fluctuations and stochastic clearance of bacteria
Jessica Coates, Bo Ryoung Park, Le Dai, Emrah Şimşek, Waqas Chaudhry, Minsu Kim
SJR Q1eLifeOA

Effective antibiotic use that minimizes treatment failures remains a challenge. A better understanding of how bacterial populations respond to antibiotics is necessary. Previous studies of large bacterial populations established the deterministic framework of pharmacodynamics. Here, characterizing the dynamics of population extinction, we demonstrated the stochastic nature of eradicating bacteria with antibiotics. Antibiotics known to kill bacteria (bactericidal) induced population fluctuations.

GeneticsBiochemistry, Genetics and Molecular Biology
2
Article|113 citations·2014
Increase in Intracranial Pressure During Carbon Dioxide Pneumoperitoneum with Steep Trendelenburg Positioning Proven by Ultrasonographic Measurement of Optic Nerve Sheath Diameter
Min‐Soo Kim, Sun Joon Bai, Jeong Rim Lee, Young Deuk Choi, Yoon Jae Kim, Seung Ho Choi
SJR Q1Journal of EndourologyOA

In patients undergoing RALRP, the increase of 12.5% in ONSD during CO2 pneumoperitoneum with steep Trendelenburg positioning was observed and thus the increase of ICP corresponding to this change of ONSD could be predicted. In 15% of the enrolled patients, ONSD increased by values equivalent to an ICP above 20 mm Hg without a deterioration of rSO2 or any neurologic complications.

Pulmonary and Respiratory MedicineMedicine
3
Article|112 citations·2012
Comparison of propofol and fentanyl administered at the end of anaesthesia for prevention of emergence agitation after sevoflurane anaesthesia in children
Min‐Soo Kim, B.-E. Moon, Hyung Min Kim, Jeong Rim Lee
SJR Q1British Journal of AnaesthesiaOA
Anesthesiology and Pain MedicineMedicine
4
Article|95 citations·2018
Distinct mechanisms coordinate transcription and translation under carbon and nitrogen starvation in Escherichia coli
Sukanya Iyer, Le Dai, Bo Ryoung Park, Minsu Kim
SJR Q1Nature Microbiology
GeneticsBiochemistry, Genetics and Molecular Biology
5
Article|92 citations·2012
Need‐based activation of ammonium uptake in Escherichia coli
Minsu Kim, Zhongge Zhang, Hiroyuki Okano, Dalai Yan, Alexander Groisman, Terence Hwa
SJR Q1Molecular Systems BiologyOA

The efficient sequestration of nutrients is vital for the growth and survival of microorganisms. Some nutrients, such as CO2 and NH3, are readily diffusible across the cell membrane. The large membrane permeability of these nutrients obviates the need of transporters when the ambient level is high. When the ambient level is low, however, maintaining a high intracellular nutrient level against passive back diffusion is both challenging and costly. Here, we study the delicate management of ammoniu

GeneticsBiochemistry, Genetics and Molecular Biology
6
Article|89 citations·2024
Techno-economic analysis of anion exchange membrane electrolysis process for green hydrogen production under uncertainty
Minsu Kim, Donggyun Lee, Meng Qi, Junghwan Kim, Junghwan Kim
SJR Q1Energy Conversion and Management
Energy Engineering and Power TechnologyEnergy
7
Article|76 citations·2021
Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria
Le Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Piližota, Minsu Kim
SJR Q1mBioOA

Various toxic compounds disrupt bacterial physiology. While bacteria harbor defense mechanisms to mitigate the toxicity, these mechanisms are often coupled to the physiological state of the cells and become ineffective when the physiology is severely disrupted.

GeneticsBiochemistry, Genetics and Molecular Biology
8
Article|74 citations·2019
Power-law tail in lag time distribution underlies bacterial persistence
Emrah Şimşek, Minsu Kim
SJR Q1Proceedings of the National Academy of SciencesOA

Significance Persisters are antibiotic-tolerant cells that can evade antibiotic killing by maintaining long lag phase. They complicate antibiotic treatment, leading to treatment failure. Extensive studies in the field found that a myriad of molecular mechanisms leads to persisters. However, we still do not quantitatively understand, nor can we predict, the population dynamics of persistence, e.g., how the number of persisters changes over time. To address this issue, we characterized the lag tim

GeneticsBiochemistry, Genetics and Molecular Biology
9
Article|60 citations·2015
Survival Kinetics of Starving Bacteria Is Biphasic and Density-Dependent
Andy Phaiboun, Yiming Zhang, Boryung Park, Minsu Kim
SJR Q1PLoS Computational BiologyOA

In the lifecycle of microorganisms, prolonged starvation is prevalent and sustaining life during starvation periods is a vital task. In the literature, it is commonly assumed that survival kinetics of starving microbes follows exponential decay. This assumption, however, has not been rigorously tested. Currently, it is not clear under what circumstances this assumption is true. Also, it is not known when such survival kinetics deviates from exponential decay and if it deviates, what underlying m

GeneticsBiochemistry, Genetics and Molecular Biology
10
Article|47 citations·2018
The emergence of metabolic heterogeneity and diverse growth responses in isogenic bacterial cells
Emrah Şimşek, Minsu Kim
SJR Q1The ISME JournalOA

Microorganisms adapt to frequent environmental changes through population diversification. Previous studies demonstrated phenotypic diversity in a clonal population and its important effects on microbial ecology. However, the dynamic changes of phenotypic composition have rarely been characterized. Also, cellular variations and environmental factors responsible for phenotypic diversity remain poorly understood. Here, we studied phenotypic diversity driven by metabolic heterogeneity. We character

GeneticsBiochemistry, Genetics and Molecular Biology
11
Article|47 citations·1976
Murine Pulmonary Alveolar Macrophages: Rates of Bacterial Ingestion, Inactivation, and Destruction
Min‐Soo Kim, Elliot Goldstein, Jerry P. Lewis, W Lippert, David M. Warshauer
SJR Q1The Journal of Infectious Diseases

The component processes of phagocytosis (ingestion, inactivation, and destruction of bacteria) were studied in mice by histological and microbiological techniques after aerosol infection with Staphylococcus aureus. Rates of bacterial ingestion and inactivation were (respectively): 0 hr, 37.7% and 0; 1 hr, 64.5% and 45.8%; 2 hr, 75.9% and 67.9%; 4 hr, 82.4% and 84.1%; and 8 hr, 90.7% and 94.8%. Bacterial destruction began 2-4 hr after aerosol infection and affected 80% of the bacteria by 8 hr. Co

Pulmonary and Respiratory MedicineMedicine
12
Article|40 citations·2018
Intravenously Administered Lidocaine and Magnesium During Thyroid Surgery in Female Patients for Better Quality of Recovery After Anesthesia
Myoung Hwa Kim, Min‐Soo Kim, Jae Hoon Lee, Sang Tae Kim, Jeong Rim Lee
SJR Q1Anesthesia & AnalgesiaOA

BACKGROUND: Although systemic lidocaine and magnesium have been widely studied as perioperative analgesic adjuvants, they have been rarely evaluated with respect to recovery quality under the same conditions. We compared the quality of recovery 40 (QoR-40) scores of female patients who received intravenous lidocaine, magnesium, and saline during thyroidectomy to investigate their effects on comprehensive recovery from anesthesia. METHODS: In this prospective, double-blind trial, 135 female patie

SurgeryMedicine
13
Article|39 citations·2015
Activin-A and Bmp4 Levels Modulate Cell Type Specification during CHIR-Induced Cardiomyogenesis
Minsu Kim, Audrey Horst, Steven Blinka, Karl Stamm, Donna K. Mahnke, James Schuman, Rebekah L. Gundry, Aoy Tomita‐Mitchell, John Lough
SJR Q1PLoS ONEOA

The use of human pluripotent cell progeny for cardiac disease modeling, drug testing and therapeutics requires the ability to efficiently induce pluripotent cells into the cardiomyogenic lineage. Although direct activation of the Activin-A and/or Bmp pathways with growth factors yields context-dependent success, recent studies have shown that induction of Wnt signaling using low molecular weight molecules such as CHIR, which in turn induces the Activin-A and Bmp pathways, is widely effective. To

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|38 citations·2015
A randomized comparison of the i‐gel™ with the self‐pressurized air‐Q™ intubating laryngeal airway in children
Min‐Soo Kim, Jae Hoon Lee, Jae Hoon Lee, Sang Won Han, Young Jae Im, Hyo Jong Kang, Jeong‐Rim Lee, Jeong‐Rim Lee
SJR Q2Pediatric AnesthesiaOA

BACKGROUND: Supraglottic airway devices with noninflatable cuff have advantages in omitting the cuff pressure monitoring and reducing potential pharyngolaryngeal complications. Typical devices without cuff inflation available in children are the i-gel and the self-pressurized air-Q intubating laryngeal airway (air-Q SP). To date, there is no comparative study between these devices in pediatric patients. AIM: The purpose of this randomized study was to compare the i-gel(™) and the self-pressurize

Anesthesiology and Pain MedicineMedicine
15
Article|33 citations·2016
Absolute quantitative measurement of transcriptional kinetic parametersin vivo
Sukanya Iyer, Bo Ryoung Park, Minsu Kim
SJR Q1Nucleic Acids ResearchOA

mRNA expression involves transcription initiation, elongation and degradation. In cells, these dynamic processes are highly regulated. However, experimental characterization of the dynamic processes in vivo is difficult due to the paucity of methods capable of direct measurements. We present a highly sensitive and versatile method enabling direct characterization of the dynamic processes. Our method is based on single-molecule fluorescence in situ hybridization (smFISH) and quantitative analyses

BiophysicsBiochemistry, Genetics and Molecular Biology

Research Areas

SurgeryMolecular BiologyAnesthesiology and Pain MedicinePulmonary and Respiratory MedicineGeneticsEpidemiology

Min‐Soo Kimの研究をNubintでさらに深く

この研究室の論文をアプリで開き、AIと共に読み、要約し、引用しましょう。