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Wooseong Kim

Ewha Womans University · 生化学・遺伝学・分子生物学

研究室紹介

Professor Wooseong Kim's research lab focuses on understanding the impact of spaceflight on microbial behavior, particularly biofilm formation and persister cell physiology, with an emphasis on developing novel antimicrobial strategies for multidrug-resistant and tolerant bacterial pathogens. The lab integrates microbiology, synthetic biology, and computational modeling—particularly all-atom molecular dynamics simulations—to investigate membrane-targeting antimicrobials and their selectivity for bacterial over mammalian cells. A key research direction involves identifying and characterizing small molecules that can effectively kill persistent bacterial states, such as MRSA persisters, using high-throughput screening and mechanistic studies. The ultimate goal is to discover new therapeutic agents that overcome the limitations of conventional antibiotics in treating chronic and drug-resistant infections.

antimicrobial agentspersister cellsmembrane disruptionmicrogravityMRSA

Research Overview

Papers
110
Total Citations
3,697
Papers (5y)
27
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
27total
2022
2023
2024
2025
2026
Citations per year (5y)
287total
20222023202420252026

Selected Papers

15
1
Article|408 citations·2018
A new class of synthetic retinoid antibiotics effective against bacterial persisters
Wooseong Kim, Wenpeng Zhu, Gabriel L. Hendricks, Daria Van Tyne, A. Duncan Steele, Colleen E. Keohane, Nico Fricke, Annie L. Conery, Steven S. Shen, Wen Pan, Kiho Lee, Rajmohan Rajamuthiah
SJR Q1Nature
Public Health, Environmental and Occupational HealthMedicine
2
Article|209 citations·2013
Spaceflight Promotes Biofilm Formation by Pseudomonas aeruginosa
Wooseong Kim, Farah K. Tengra, Zachary D. Young, Jasmine Shong, Nicholas Marchand, Hon Kit Chan, Ravindra C. Pangule, Macarena Parra, Jonathan S. Dordick, Joel L. Plawsky, Cynthia H. Collins
SJR Q1PLoS ONEOA

Understanding the effects of spaceflight on microbial communities is crucial for the success of long-term, manned space missions. Surface-associated bacterial communities, known as biofilms, were abundant on the Mir space station and continue to be a challenge on the International Space Station. The health and safety hazards linked to the development of biofilms are of particular concern due to the suppression of immune function observed during spaceflight. While planktonic cultures of microbes

PhysiologyMedicine
3
Article|208 citations·2019
A selective membrane-targeting repurposed antibiotic with activity against persistent methicillin-resistant Staphylococcus aureus
Wooseong Kim, Guijin Zou, Taylor P. A. Hari, Ingrid K. Wilt, Wenpeng Zhu, Nicolas Galle, Hammad A. Faizi, Gabriel L. Hendricks, Katerina Tori, Wen Pan, Xiaowen Huang, A. Duncan Steele
SJR Q1Proceedings of the National Academy of SciencesOA

(MRSA) persister cells, which correlates with its ability to disrupt the integrity of Gram-positive bacterial membranes. Critically, bithionol exhibits significant selectivity for bacterial compared with mammalian cell membranes. All-atom molecular dynamics (MD) simulations demonstrate that the selectivity of bithionol for bacterial membranes correlates with its ability to penetrate and embed in bacterial-mimic lipid bilayers, but not in cholesterol-rich mammalian-mimic lipid bilayers. In additi

Infectious DiseasesMedicine
4
Article|81 citations·2013
Effect of spaceflight on Pseudomonas aeruginosa final cell density is modulated by nutrient and oxygen availability
Wooseong Kim, Farah K. Tengra, Jasmine Shong, Nicholas Marchand, Hon Kit Chan, Zachary D. Young, Ravindra C. Pangule, Macarena Parra, Jonathan S. Dordick, Joel L. Plawsky, Cynthia H. Collins
SJR Q1BMC MicrobiologyOA

BACKGROUND: Abundant populations of bacteria have been observed on Mir and the International Space Station. While some experiments have shown that bacteria cultured during spaceflight exhibit a range of potentially troublesome characteristics, including increases in growth, antibiotic resistance and virulence, other studies have shown minimal differences when cells were cultured during spaceflight or on Earth. Although the final cell density of bacteria grown during spaceflight has been reported

PhysiologyMedicine
5
Article|73 citations·2015
Identification of an Antimicrobial Agent Effective against Methicillin-Resistant Staphylococcus aureus Persisters Using a Fluorescence-Based Screening Strategy
Wooseong Kim, Annie L. Conery, Rajmohan Rajamuthiah, Beth Burgwyn Fuchs, Frederick M. Ausubel, Eleftherios Mylonakis
SJR Q1PLoS ONEOA

Persisters are a subpopulation of normal bacterial cells that show tolerance to conventional antibiotics. Persister cells are responsible for recalcitrant chronic infections and new antibiotics effective against persisters would be a major development in the treatment of these infections. Using the reporter dye SYTOX Green that only stains cells with permeabilized membranes, we developed a fluorescence-based screening assay in a 384-well format for identifying compounds that can kill methicillin

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|53 citations·2020
The Neutrally Charged Diarylurea Compound PQ401 Kills Antibiotic-Resistant and Antibiotic-Tolerant Staphylococcus aureus
Wooseong Kim, Guijin Zou, Wen Pan, Nico Fricke, Hammad A. Faizi, Soo Min Kim, Rajamohammed Khader, Silei Li, Kiho Lee, Iliana Escorba, Petia M. Vlahovska, Huajian Gao
SJR Q1mBioOA

Membrane-damaging antimicrobial agents have great potential to treat multidrug-resistant or multidrug-tolerant bacteria against which conventional antibiotics are not effective. However, their therapeutic applications are often hampered due to their low selectivity to bacterial over mammalian membranes or their potential for cross-resistance to a broad spectrum of cationic membrane-active antimicrobial agents. We discovered that the diarylurea derivative compound PQ401 has antimicrobial potency

MicrobiologyImmunology and Microbiology
7
Article|48 citations·2020
New Antimicrobial Bioactivity against Multidrug-Resistant Gram-Positive Bacteria of Kinase Inhibitor IMD0354
Iliana E. Escobar, Alexis White, Wooseong Kim, Eleftherios Mylonakis
SJR Q1AntibioticsOA

Multidrug-resistant pathogens pose a serious threat to human health. For decades, the antibiotic vancomycin has been a potent option when treating Gram-positive multidrug-resistant infections. Nonetheless, in recent decades, we have begun to see an increase in vancomycin-resistant bacteria. Here, we show that the nuclear factor-kappa B (NF-κB) inhibitor N-[3,5-Bis(trifluoromethyl)phenyl]-5-chloro-2-hydroxybenzamide (IMD0354) was identified as a positive hit through a Caenorhabditis elegans–methi

PharmacologyMedicine
8
Article|47 citations·2016
Nh125 Kills Methicillin-Resistant Staphylococcus Aureus Persisters by Lipid Bilayer Disruption
Wooseong Kim, Nico Fricke, Annie L. Conery, Beth Burgwyn Fuchs, Rajmohan Rajamuthiah, Elamparithi Jayamani, Petia M. Vlahovska, Frederick M. Ausubel, Eleftherios Mylonakis
SJR Q3Future Medicinal Chemistry

NH125 kills MRSA persisters by interacting with and disrupting membranes in a detergent-like manner.

Infectious DiseasesMedicine
9
Review|44 citations·2018
Strategies against Methicillin-ResistantStaphylococcus AureusPersisters
Wooseong Kim, Gabriel L. Hendricks, Katerina Tori, Beth Burgwyn Fuchs, Eleftherios Mylonakis
SJR Q3Future Medicinal Chemistry

Chronic Staphylococcus aureus infections are complicated by frequent relapses not only from the development of drug resistance to conventional antibiotics, but also through the formation of persister bacterial cells. Bacterial persisters are in a transient, metabolically inactive state, making conventional antibiotics that target essential cellular growth processes ineffective, resulting in high clinical failure rates of antibiotic chemotherapy. The development of new antibiotics against persist

Infectious DiseasesMedicine
10
Review|42 citations·2017
An update on the use ofC. elegansfor preclinical drug discovery: screening and identifying anti-infective drugs
Wooseong Kim, Gabriel L. Hendricks, Kiho Lee, Eleftherios Mylonakis
SJR Q1Expert Opinion on Drug Discovery

The emergence of antibiotic-resistant and -tolerant bacteria is a major threat to human health. Although efforts for drug discovery are ongoing, conventional bacteria-centered screening strategies have thus far failed to yield new classes of effective antibiotics. Therefore, new paradigms for discovering novel antibiotics are of critical importance. Caenorhabditis elegans, a model organism used for in vivo, offers a promising solution for identification of anti-infective compounds. Areas covered

AgingBiochemistry, Genetics and Molecular Biology
11
Article|40 citations·2018
Discovery and Optimization of nTZDpa as an Antibiotic Effective Against Bacterial Persisters
Wooseong Kim, A. Duncan Steele, Wenpeng Zhu, Erika E. Csatary, Nico Fricke, Madeline M. Dekarske, Elamparithi Jayamani, Wen Pan, Bumsup Kwon, Isabelle Sinitsa, Jake L. Rosen, Annie L. Conery
SJR Q1ACS Infectious Diseases

Conventional antibiotics are not effective in treating infections caused by drug-resistant or persistent nongrowing bacteria, creating a dire need for the development of new antibiotics. We report that the small molecule nTZDpa, previously characterized as a nonthiazolidinedione peroxisome proliferator-activated receptor gamma partial agonist, kills both growing and persistent Staphylococcus aureus cells by lipid bilayer disruption. S. aureus exhibited no detectable development of resistance to

Infectious DiseasesMedicine
12
Article|30 citations·2019
Sofalcone, a gastroprotective drug, covalently binds to KEAP1 to activate Nrf2 resulting in anti-colitic activity
Wooseong Kim, Hanju Lee, Soo‐Jin Kim, Sanghyun Joo, Seongkeun Jeong, Jin‐Wook Yoo, Yunjin Jung
SJR Q1European Journal of Pharmacology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|21 citations·2016
5-Aminosalicylic Acid Azo-Linked to Procainamide Acts as an Anticolitic Mutual Prodrug via Additive Inhibition of Nuclear Factor kappaB
Wooseong Kim, Joon Nam, Sunyoung Lee, Seongkeun Jeong, Yunjin Jung
SJR Q1Molecular Pharmaceutics

To improve the anticolitic efficacy of 5-aminosalicylic acid (5-ASA), a colon-specific mutual prodrug of 5-ASA was designed. 5-ASA was coupled to procainamide (PA), a local anesthetic, via an azo bond to prepare 5-(4-{[2-(diethylamino)ethyl]carbamoyl}phenylazo)salicylic acid (5-ASA-azo-PA). 5-ASA-azo-PA was cleaved to 5-ASA and PA up to about 76% at 10 h in the cecal contents while remaining stable in the small intestinal contents. Oral gavage of 5-ASA-azo-PA and sulfasalazine, a colon-specific

GeneticsBiochemistry, Genetics and Molecular Biology
14
Article|17 citations·2019
Colon-Targeted Delivery Facilitates the Therapeutic Switching of Sofalcone, a Gastroprotective Agent, to an Anticolitic Drug via Nrf2 Activation
Wooseong Kim, Soo‐Jin Kim, Sanghyun Ju, Hanju Lee, Seongkeun Jeong, Jin‐Wook Yoo, In‐Soo Yoon, Yunjin Jung
SJR Q1Molecular Pharmaceutics

We investigated if the therapeutic switching of sofalcone (SFC), a gastroprotective agent, to an anticolitic agent is feasible using colon-targeted drug delivery. SFC can activate the anti-inflammatory nuclear factor (erythroid-derived 2)-like 2 (Nrf2)-hemeoxygenase-1 (HO-1) pathway in human colon epithelial cells and murine macrophages. For the efficient treatment of colitis, SFC was coupled with acidic amino acids to yield SFC-aspartic acid (SFC-AA) and SFC-glutamic acid, and their colon targe

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|16 citations·2015
Colonic delivery of celecoxib is a potential pharmaceutical strategy for repositioning the selective COX-2 inhibitor as an anti-colitic agent
Wooseong Kim, Yonghyun Lee, Seongkeun Jeong, Joon Nam, Sunyoung Lee, Yunjin Jung
SJR Q1Archives of Pharmacal Research
PharmacologyMedicine

Research Areas

Molecular BiologyInfectious DiseasesPharmacologyMicrobiologyCancer ResearchGenetics

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