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Youngjae Kim

Sungkyunkwan University · 医学

研究室紹介

Professor Youngjae Kim's research lab focuses on translational biomedical research with a strong emphasis on molecular mechanisms underlying infectious diseases, gastrointestinal inflammation, and medical imaging. The lab investigates host-microbe interactions, particularly the role of specific bacteria like *Streptococcus mutans* and *S. sobrinus* in early childhood caries, while also exploring nuclear receptors such as ESRRA in regulating intestinal homeostasis and autophagy. Additionally, the lab applies advanced imaging technologies, including deep learning and quantitative CT analysis, to improve diagnostic accuracy in spine and lung nodule segmentation. The integration of molecular biology, immunology, and computational imaging defines the lab’s multidisciplinary approach to precision medicine.

bacterial pathogenesisintestinal inflammationmedical imagingdeep learningimmune checkpoint molecules

Research Overview

Papers
411
Total Citations
6,619
Papers (5y)
124
Primary Field
医学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
124total
2022
2023
2024
2025
2026
Citations per year (5y)
1,185total
20222023202420252026

Selected Papers

15
1
Article|95 citations·2008
Quantitative real‐time polymerase chain reaction for Streptococcus mutans and Streptococcus sobrinus in dental plaque samples and its association with early childhood caries
EUN‐JUNG CHOI, SUNG‐HOON LEE, Young Jae Kim
SJR Q1International Journal of Paediatric Dentistry

BACKGROUND: Streptococcus mutans and Streptococcus sobrinus are closely associated with the development of early childhood caries (ECC). Recently, quantitative real-time polymerase chain reaction (qRT-PCR) has been used for rapid and accurate quantification of these bacterial species. AIM: This study aims to detect quantitatively the levels of S. mutans and S. sobrinus in plaque samples by qRT-PCR, and to assess their association with the prevalence of ECC in Korean preschool children. DESIGN: O

PeriodonticsDentistry
2
Article|78 citations·2020
ESRRA (estrogen related receptor alpha) is a critical regulator of intestinal homeostasis through activation of autophagic flux via gut microbiota
Sup Kim, June‐Young Lee, Seul Gi Shin, Jin Kyung Kim, Prashanta Silwal, Young Jae Kim, Na‐Ri Shin, Pil Soo Kim, Minho Won, Sang‐Hee Lee, Soo Yeon Kim, Miwa Sasai
SJR Q1AutophagyOA

The orphan nuclear receptor ESRRA (estrogen related receptor alpha) is critical in mitochondrial biogenesis and macroautophagy/autophagy function; however, the roles of ESRRA in intestinal function remain uncharacterized. Herein we identified that ESRRA acts as a key regulator of intestinal homeostasis by amelioration of colonic inflammation through activation of autophagic flux and control of host gut microbiota. Esrra-deficient mice presented with increased susceptibility to dextran sodium sul

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|64 citations·2009
Posterior root tear of the medial meniscus in multiple knee ligament injuries
Young Jae Kim, Jin Goo Kim, Seok Hwan Chang, Jae Chan Shim, Sang Bum Kim, Mi Young Lee
SJR Q2The Knee
SurgeryMedicine
4
Article|62 citations·2012
Diagnostic performance of MRI and EUS in the differentiation of benign from malignant pancreatic cyst and cyst communication with the main duct
Jung Hoon Kim, Hyo Won Eun, Hyun‐Jeong Park, Seong Sook Hong, Young Jae Kim
SJR Q1European Journal of Radiology
OncologyMedicine
5
Article|62 citations·2012
Body Fat Assessment Method Using CT Images with Separation Mask Algorithm
Young Jae Kim, Seung-Hyun Lee, Taeyun Kim, Jeong Yun Park, Seung Hong Choi, Kwang Gi Kim
SJR Q2Journal of Digital ImagingOA
PhysiologyMedicine
6
Article|62 citations·2022
Arginine-mediated gut microbiome remodeling promotes host pulmonary immune defense against nontuberculous mycobacterial infection
Young Jae Kim, June‐Young Lee, Jae Jin Lee, Sang Min Jeon, Prashanta Silwal, In Soo Kim, Hyeon Ji Kim, Cho Rong Park, Chaeuk Chung, Jeong Eun Han, Jee-Won Choi, Euon Jung Tak
SJR Q1Gut MicrobesOA

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EpidemiologyMedicine
7
Article|58 citations·2020
Web-Based Spine Segmentation Using Deep Learning in Computed Tomography Images
Young Jae Kim, Bilegt Ganbold, Kwang Gi Kim
SJR Q2Healthcare Informatics ResearchOA

The proposed web-based deep learning approach can be very practical and accurate for spine segmentation as a diagnostic method.

Biomedical EngineeringEngineering
8
Article|54 citations·2019
The Effect of CT Scan Parameters on the Measurement of CT Radiomic Features: A Lung Nodule Phantom Study
Young Jae Kim, Hyun Ju Lee, Kwang Gi Kim, Seung-Hyun Lee
Computational and Mathematical Methods in MedicineOA

The purpose of this study was to explore the effects of CT slice thickness, reconstruction algorithm, and radiation dose on quantification of CT features to characterize lung nodules using a chest phantom. Spherical lung nodule phantoms of known densities (−630 and + 100 HU) were inserted into an anthropomorphic thorax phantom. CT scan was performed ten times with relocations. CT data were reconstructed using 12 different imaging settings; three different slice thicknesses of 1.25, 2.5, and 5.0

Radiology, Nuclear Medicine and ImagingMedicine
9
Article|53 citations·2020
Correlation Between Tumor-Associated Macrophage and Immune Checkpoint Molecule Expression and Its Prognostic Significance in Cutaneous Melanoma
Young Jae Kim, Chong Hyun Won, Mi Woo Lee, Jee Ho Choi, Sung Eun Chang, Woo Jin Lee
SJR Q1Journal of Clinical MedicineOA

The association between tumor-associated macrophages (TAMs) and the expression of immune checkpoint molecules has not been well described in cutaneous melanoma. We evaluated the correlations between the expression of markers of TAMs, cluster of differentiation 163 (CD163), and immune checkpoint molecules, programmed cell death protein-1 (PD-1), and lymphocyte activating gene-3 (LAG-3). We also determined their relationships with the clinicopathological features and disease outcomes in melanoma.

OncologyMedicine
10
Article|50 citations·2012
Facile fabrication of Pickering emulsion polymerized polystyrene/laponite composite nanoparticles and their electrorheology
Young Jae Kim, Ying Dan Liu, Hyoung Jin Choi, Soo‐Jin Park
SJR Q1Journal of Colloid and Interface Science
Civil and Structural EngineeringEngineering
11
Article|47 citations·2007
A phase II trial of S-1 and cisplatin in patients with metastatic or relapsed biliary tract cancer
Young Jae Kim, Seock‐Ah Im, H.G. Kim, Sung Yong Oh, Kyung-Woo Lee, In Sil Choi, Do‐Youn Oh, Sang Hoon Lee, Jin Hyoung Kim, D.W. Kim, Taewoo Kim, Seung Woo Kim
SJR Q1Annals of Oncology
SurgeryMedicine
12
Article|44 citations·2021
Prediction Models for Obstructive Sleep Apnea in Korean Adults Using Machine Learning Techniques
Young Jae Kim, Ji Soo Jeon, Seo‐Eun Cho, Kwang Gi Kim, Seung‐Gul Kang
SJR Q2DiagnosticsOA

This study aimed to investigate the applicability of machine learning to predict obstructive sleep apnea (OSA) among individuals with suspected OSA in South Korea. A total of 92 clinical variables for OSA were collected from 279 South Koreans (OSA, n = 213; no OSA, n = 66), from which seven major clinical indices were selected. The data were randomly divided into training data (OSA, n = 149; no OSA, n = 46) and test data (OSA, n = 64; no OSA, n = 20). Using the seven clinical indices, the OSA pr

PhysiologyMedicine
13
Article|42 citations·2020
Prospective, comparative evaluation of a deep neural network and dermoscopy in the diagnosis of onychomycosis
Young Jae Kim, Seung Seog Han, Hee Joo Yang, Sung Eun Chang
SJR Q1PLoS ONEOA

As a standalone method, the algorithm analyzed photographs taken by non-physician and showed comparable accuracy for the diagnosis of onychomycosis to that made by experienced dermatologists and by dermoscopic examination. Large sample size and world-wide, multicentered studies should be investigated to prove the performance of the algorithm.

EpidemiologyMedicine
14
Article|40 citations·2021
New polyp image classification technique using transfer learning of network-in-network structure in endoscopic images
Young Jae Kim, Jang Pyo Bae, Jun‐Won Chung, Dong Kyun Park, Kwang Gi Kim, Yoon Jae Kim
SJR Q1Scientific ReportsOA

While colorectal cancer is known to occur in the gastrointestinal tract. It is the third most common form of cancer of 27 major types of cancer in South Korea and worldwide. Colorectal polyps are known to increase the potential of developing colorectal cancer. Detected polyps need to be resected to reduce the risk of developing cancer. This research improved the performance of polyp classification through the fine-tuning of Network-in-Network (NIN) after applying a pre-trained model of the Image

Computer Vision and Pattern RecognitionComputer Science
15
Article|39 citations·2021
A deep learning algorithm for automated measurement of vertebral body compression from X-ray images
Jae Won Seo, Sang-Heon Lim, Jin Gyo Jeong, Young Jae Kim, Kwang Gi Kim, Ji Young Jeon
SJR Q1Scientific ReportsOA

The vertebral compression is a significant factor for determining the prognosis of osteoporotic vertebral compression fractures and is generally measured manually by specialists. The consequent misdiagnosis or delayed diagnosis can be fatal for patients. In this study, we trained and evaluated the performance of a vertebral body segmentation model and a vertebral compression measurement model based on convolutional neural networks. For vertebral body segmentation, we used a recurrent residual U-

Biomedical EngineeringEngineering

Research Areas

SurgeryRadiology, Nuclear Medicine and ImagingEpidemiologyOncologyPulmonary and Respiratory MedicineBiomedical Engineering

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