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Yumi Kim

Korea Advanced Institute of Science and Technology · 免疫学・微生物学

研究室紹介

Professor Yumi Kim's research lab focuses on host-pathogen interactions, particularly the innate immune response to viral infections such as SARS-CoV-2, with an emphasis on interferon evasion mechanisms. The lab also investigates cellular signaling pathways involving G protein-coupled receptors (GPCRs) and arrestins, as well as the molecular mechanics of mitotic kinesins like CENP-E in chromosome segregation. Additionally, the lab explores antigen presentation in B cells and the regulation of circadian rhythms in plants, highlighting a broad interest in cellular and molecular mechanisms underlying immunity, intracellular trafficking, and biological timing.

viral immune evasioninterferon responseGPCR signalingmitotic kinesinsantigen presentation

Research Overview

Papers
138
Total Citations
5,536
Papers (5y)
42
Primary Field
免疫学・微生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
42total
2021
2022
2023
2024
2025
Citations per year (5y)
602total
20212022202320242025

Selected Papers

15
1
Article|673 citations·2008
UNC93B1 delivers nucleotide-sensing toll-like receptors to endolysosomes
You‐Me Kim, Melanie M. Brinkmann, Marie-Ève Paquet, Hidde L. Ploegh
SJR Q1Nature
ImmunologyImmunology and Microbiology
2
Review|304 citations·2021
Type I and III interferon responses in SARS-CoV-2 infection
You‐Me Kim, Eui‐Cheol Shin
SJR Q1Experimental & Molecular MedicineOA

Coronavirus disease 2019 (COVID-19), the current pandemic disease, is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Type I and III interferons (IFNs) are innate cytokines that are important in the first-line defense against viruses. Similar to many other viruses, SARS-CoV-2 has evolved mechanisms for evading the antiviral effects of type I and III IFNs at multiple levels, including the induction of IFN expression and cellular responses to IFNs. In this review,

Infectious DiseasesMedicine
3
Article|199 citations·2002
Differential Roles of Arrestin-2 Interaction with Clathrin and Adaptor Protein 2 in G Protein-coupled Receptor Trafficking
You‐Me Kim, Jeffrey Benovic
SJR Q1Journal of Biological ChemistryOA

The non-visual arrestins, arrestin-2 and arrestin-3, play a critical role in regulating the signaling and trafficking of many G protein-coupled receptors (GPCRs). Molecular insight into the role of arrestins in GPCR trafficking has suggested that arrestin interaction with clathrin, beta(2)-adaptin (the beta-subunit of the adaptor protein AP2), and phosphoinositides contributes to this process. In the present study, we have attempted to better define the molecular basis and functional role of arr

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|127 citations·2006
Monovalent ligation of the B cell receptor induces receptor activation but fails to promote antigen presentation
You‐Me Kim, Jennifer Pan, Gregory A. Korbel, Victor Peperzak, Marianne Boes, Hidde L. Ploegh
SJR Q1Proceedings of the National Academy of Sciences

We explored the role of antigen valency in B cell receptor (BCR) activation and rearrangement of intracellular MHC class II compartments as factors that contribute to the efficacy of antigen presentation. Using primary B cells that express a hen egg lysozyme (HEL)-specific BCR, we found that oligomeric HEL more efficiently promoted both BCR activation and internalization than did monovalent HEL, although monovalent HEL, unlike monovalent Fab fragments of anti-Ig, readily triggered the BCR. Nonet

ImmunologyImmunology and Microbiology
5
Article|111 citations·2017
Gut-Specific Delivery of T-Helper 17 Cells Reduces Obesity and Insulin Resistance in Mice
Chun-Pyo Hong, Areum Park, Bo‐Gie Yang, Chang‐Ho Yun, Min-Jung Kwak, Gil-Woo Lee, Jung Hwan Kim, Min Seong Jang, Eunjung Lee, Eun-Ji Jeun, Gihoon You, Kwang Soon Kim
SJR Q1Gastroenterology
EpidemiologyMedicine
6
Article|86 citations·2016
SH2 Domains Serve as Lipid-Binding Modules for pTyr-Signaling Proteins
Mi-Jeong Park, Ren Sheng, Antonina Silkov, Da-Jung Jung, Zhigang Wang, Yao Xin, Hyun‐Jin Kim, Pallavi Thiagarajan‐Rosenkranz, Seo-Hyeon Song, Youngdae Yoon, Won‐Hee Nam, Ilshin Kim
SJR Q1Molecular CellOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|67 citations·2013
Immunopathogenesis of Allergic Asthma: More Than the Th2 Hypothesis
You‐Me Kim, You-Sun Kim, Seong Gyu Jeon, Yoon‐Keun Kim
SJR Q1Allergy Asthma and Immunology ResearchOA

Asthma is a chronic obstructive airway disease that involves inflammation of the respiratory tract. Biological contaminants in indoor air can induce innate and adaptive immune responses and inflammation, resulting in asthma pathology. Epidemiologic surveys indicate that the prevalence of asthma is higher in developed countries than in developing countries. The prevalence of asthma in Korea has increased during the last several decades. This increase may be related to changes in housing styles, w

PhysiologyMedicine
8
Article|59 citations·2002
Regulation of Arrestin-3 Phosphorylation by Casein Kinase II
You‐Me Kim, Larry S. Barak, Marc G. Caron, Jeffrey Benovic
SJR Q1Journal of Biological ChemistryOA

Arrestins play an important role in regulating the function of G protein-coupled receptors including receptor desensitization, internalization, down-regulation, and signaling via nonreceptor tyrosine kinases and mitogen-activated protein kinases. Previous studies have revealed that arrestins themselves are also subject to regulation. In the present study, we focused on identifying potential mechanisms involved in regulating the function of arrestin-3. Using metabolic labeling, phosphoamino acid

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
letter|58 citations·2018
HMGB1: LPS Delivery Vehicle for Caspase-11-Mediated Pyroptosis
Ho Min Kim, You‐Me Kim
SJR Q1ImmunityOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|47 citations·2016
Lipids Regulate Lck Protein Activity through Their Interactions with the Lck Src Homology 2 Domain
Ren Sheng, Da-Jung Jung, Antonina Silkov, Hyun‐Jin Kim, Indira Singaram, Zhigang Wang, Yao Xin, Eui Kim, Mi-Jeong Park, Pallavi Thiagarajan‐Rosenkranz, Sean T. Smrt, Barry Honig
SJR Q1Journal of Biological ChemistryOA

Lymphocyte-specific protein-tyrosine kinase (Lck) plays an essential role in T cell receptor (TCR) signaling and T cell development, but its activation mechanism is not fully understood. To explore the possibility that plasma membrane (PM) lipids control TCR signaling activities of Lck, we measured the membrane binding properties of its regulatory Src homology 2 (SH2) and Src homology 3 domains. The Lck SH2 domain binds anionic PM lipids with high affinity but with low specificity. Electrostatic

ImmunologyImmunology and Microbiology
11
Article|47 citations·2015
TLR9 regulates adipose tissue inflammation and obesity-related metabolic disorders
Chun‐Pyo Hong, Chang‐Ho Yun, Gil-Woo Lee, Areum Park, You‐Me Kim, Myoung Ho Jang
SJR Q1ObesityOA

TLR9 signaling is involved in regulating adipose tissue inflammation and controlling obesity and the metabolic syndrome.

EpidemiologyMedicine
12
Article|36 citations·2023
Immaturity of immune cells around the dural venous sinuses contributes to viral meningoencephalitis in neonates
Young Chan Kim, Young Chan Kim, Ji Hoon Ahn, Hokyung Jin, Myung Jin Yang, Seon Pyo Hong, Jin‐Hui Yoon, Sang-Hoon Kim, Tirhas Niguse Gebre, Hyuek Jong Lee, You‐Me Kim, You‐Me Kim
SJR Q1Science ImmunologyOA

High neonatal susceptibility to meningitis has been attributed to the anatomical barriers that act to protect the central nervous system (CNS) from infection being immature and not fully developed. However, the mechanisms by which pathogens breach CNS barriers are poorly understood. Using the Armstrong strain of lymphocytic choriomeningitis virus (LCMV) to study virus propagation into the CNS during systemic infection, we demonstrate that mortality in neonatal, but not adult, mice is high after

MicrobiologyImmunology and Microbiology
13
Article|35 citations·2013
Acidic Amino Acid Residues in the Juxtamembrane Region of the Nucleotide-Sensing TLRs Are Important for UNC93B1 Binding and Signaling
Ji‐Hee Kim, Jiwon Huh, Misun Hwang, Eun-Hye Kwon, Da-Jung Jung, Melanie M. Brinkmann, Myoung Ho Jang, Hidde L. Ploegh, You‐Me Kim
SJR Q1The Journal of Immunology

TLRs are divided into two groups based on their subcellular localization patterns. TLR1, 2, 4, 5, and 6 are expressed on the cell surface, whereas the nucleotide-sensing TLRs, such as TLR3, 7, 8, and 9 stay mainly inside cells. The polytopic membrane protein UNC93B1 physically interacts with the nucleotide-sensing TLRs and delivers them from the endoplasmic reticulum to endolysosomes, where the TLRs recognize their ligands and initiate signaling. In cells with nonfunctional UNC93B1, the nucleic

ImmunologyImmunology and Microbiology
14
Article|31 citations·1995
Brazilin Stimulates the Glucose Transport in 3T3-L1 Cells
You‐Me Kim, Sang Geon Kim, Lee‐Yong Khil, Chang‐Kiu Moon
SJR Q2Planta Medica

Brazilin (7,11b-dihydrobenz[b]indeno-[1,2-d]pyran-3,6a,9,10(6H)- tetrol) was found to have hypoglycemic action and increase glucose metabolism in experimental diabetic animals. In order to investigate the mechanism of hypoglycemic action of brazilin, the effects of brazilin on glucose transport, insulin receptor autophosphorylation, and protein kinase C(PKC) activity in 3T3-L1 cells were studied. Brazilin increased basal glucose transport in 3T3-L1 fibroblasts and adipocytes. However, insulin-st

PharmacologyMedicine
15
Article|22 citations·2018
Two-photon microscopy of Paneth cells in the small intestine of live mice
Won Hyuk Jang, Areum Park, Taejun Wang, Chan Johng Kim, Hoonchul Chang, Bo‐Gie Yang, Myoung Joon Kim, Seung‐Jae Myung, Sin‐Hyeog Im, Myoung Ho Jang, You‐Me Kim, Ki Hean Kim
SJR Q1Scientific ReportsOA

Paneth cells are one of the principal epithelial cell types in the small intestine, located at the base of intestinal crypts. Paneth cells play key roles in intestinal host-microbe homeostasis via granule secretion, and their dysfunction is implicated in pathogenesis of several diseases including Crohn's disease. Despite their physiological importance, study of Paneth cells has been hampered by the limited accessibility and lack of labeling methods. In this study, we developed a simple in vivo i

ImmunologyImmunology and Microbiology

Research Areas

ImmunologyMolecular BiologySociology and Political ScienceEpidemiologyPhysiologyBiomedical Engineering

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