Skip to main content

Byung Sik Kim

Ewha Womans University · 生化学・遺伝学・分子生物学

研究室紹介

Professor Byung Sik Kim's research lab focuses on the molecular pathogenesis of Vibrio species, particularly *Vibrio vulnificus* and *Vibrio parahaemolyticus*, with an emphasis on virulence factors, toxin systems like MARTX, and host-pathogen interactions. The lab investigates quorum sensing regulation and identifies novel inhibitors to control pathogenic Vibrio in aquaculture and food safety contexts. A key direction involves developing sustainable biocontrol strategies, such as lytic bacteriophages, to combat antibiotic-resistant strains in seafood production. The lab integrates molecular microbiology, structural biology, and host infection models to understand and intervene in Vibrio-related diseases.

Vibrio pathogenesisbacteriophagequorum sensingMARTX toxinvirulence factors

Research Overview

Papers
47
Total Citations
1,150
Papers (5y)
19
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
19total
2022
2023
2024
2025
2026
Citations per year (5y)
190total
20222023202420252026

Selected Papers

15
1
Article|159 citations·2007
Identification and characterization of the Vibrio vulnificus rtxA essential for cytotoxicity in vitro and virulence in mice.
Jeong Hyun Lee, Myung Won Kim, Byoung Sik Kim, Seung Min Kim, Byung Cheon Lee, Tae Sung Kim, Sang Ho Choi
PubMed

A mutant exhibiting decreased cytotoxic activity toward INT-407 intestinal epithelial cells and carrying a mutation in the rtx gene cluster that consists of rtxCA and rtxBDE operons was screened from a library of V. vulnificus mutants. The functions of the rtxA gene, assessed by constructing an isogenic mutant and evaluating its phenotypic changes, demonstrated that RtxA is essential for the virulence of V. vulnificus in mice as well as in tissue cultures.

EndocrinologyBiochemistry, Genetics and Molecular Biology
2
Article|57 citations·2015
Distinct Roles of the Repeat-Containing Regions and Effector Domains of the Vibrio vulnificus Multifunctional-Autoprocessing Repeats-in-Toxin (MARTX) Toxin
Byoung Sik Kim, Hannah E. Gavin, K.J.F. Satchell
SJR Q1mBioOA

UNLABELLED: Vibrio vulnificus is a seafood-borne pathogen that destroys the intestinal epithelium, leading to rapid bacterial dissemination and death. The most important virulence factor is the multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin comprised of effector domains in the center region flanked by long repeat-containing regions which are well conserved among MARTX toxins and predicted to translocate effector domains. Here, we examined the role of the repeat-containing regions

EndocrinologyBiochemistry, Genetics and Molecular Biology
3
Article|56 citations·2018
QStatin, a Selective Inhibitor of Quorum Sensing in Vibrio Species
Byoung Sik Kim, Song Yee Jang, Ye‐Ji Bang, Jungwon Hwang, Youngwon Koo, Kyung Ku Jang, Dongyeol Lim, Myung Hee Kim, Sang Ho Choi
SJR Q1mBioOA

ABSTRACT Pathogenic Vibrio species cause diseases in diverse marine animals reared in aquaculture. Since their pathogenesis, persistence, and survival in marine environments are regulated by quorum sensing (QS), QS interference has attracted attention as a means to control these bacteria in aquatic settings. A few QS inhibitors of Vibrio species have been reported, but detailed molecular mechanisms are lacking. Here, we identified a novel, potent, and selective Vibrio QS inhibitor, named QStatin

EndocrinologyBiochemistry, Genetics and Molecular Biology
4
Article|53 citations·2017
Identification and characterization of Vibrio vulnificus plpA encoding a phospholipase A2 essential for pathogenesis
Kyung Ku Jang, Zee-Won Lee, Bityeoul Kim, Young Hyun Jung, Ho Jae Han, Myung Hee Kim, Byoung Sik Kim, Sang Ho Choi
SJR Q1Journal of Biological ChemistryOA

The marine bacterium <i>Vibrio vulnificus</i> causes food-borne diseases, which may lead to life-threatening septicemia in some individuals. Therefore, identifying virulence factors in <i>V. vulnificus</i> is of high priority. We performed a transcriptome analysis on <i>V. vulnificus</i> after infection of human intestinal HT29-methotrexate cells and found induction of <i>plpA</i>, encoding a putative phospholipase, <i>Vv</i>PlpA. Bioinformatics, biochemical, and genetic analyses demonstrated th

EndocrinologyBiochemistry, Genetics and Molecular Biology
5
Article|51 citations·2021
Tackling Vibrio parahaemolyticus in ready-to-eat raw fish flesh slices using lytic phage VPT02 isolated from market oyster
Hwa Jeong You, Jung Hyen Lee, Minjin Oh, Sin Young Hong, Doyeon Kim, Jieun Noh, Minsik Kim, Byoung Sik Kim
SJR Q1Food Research InternationalOA

The opportunistic pathogen V. parahaemolyticus is a major causative agent for seafood-borne illness worldwide. It also causes severe vibriosis in aquaculture animals, affecting seafood production with huge economic loss. These issues are getting worse due to the current global warming in oceans, spread of antibiotic resistance, and changes in consumer preference toward ready-to-eat (RTE) food items including seafood. To answer the urgent need for sustainable biocontrol agents against V. parahaem

EndocrinologyBiochemistry, Genetics and Molecular Biology
6
Article|43 citations·2011
Cooperative Regulation of the Vibrio vulnificus nan Gene Cluster by NanR Protein, cAMP Receptor Protein, and N-Acetylmannosamine 6-Phosphate
Byoung Sik Kim, Jungwon Hwang, Myung Hee Kim, Sang Ho Choi
SJR Q1Journal of Biological ChemistryOA

The nan cluster of Vibrio vulnificus, a food-borne pathogen, consists of two divergently transcribed operons, nanT(PSL)AR and nanEK nagA, required for transport and catabolism of N-acetylneuraminic acid (Neu5Ac). A mutation of nanR abolished the extensive lag phase observed for the bacteria growing on Neu5Ac and increased transcription of nanT(P) and nanE, suggesting that NanR is a transcriptional repressor of both nan operons. Intracellular accumulation of Neu5Ac was dependent on the carbon sou

EndocrinologyBiochemistry, Genetics and Molecular Biology
7
Review|39 citations·2018
The Modes of Action of MARTX Toxin Effector Domains
Byoung Sik Kim
SJR Q1ToxinsOA

Many Gram-negative bacterial pathogens directly deliver numerous effector proteins from the bacterium to the host cell, thereby altering the target cell physiology. The already well-characterized effector delivery systems are type III, type IV, and type VI secretion systems. Multifunctional autoprocessing repeats-in-toxin (MARTX) toxins are another effector delivery platform employed by some genera of Gram-negative bacteria. These single polypeptide exotoxins possess up to five effector domains

ImmunologyImmunology and Microbiology
8
Article|29 citations·2022
Phage biocontrol of zoonotic food-borne pathogen Vibrio parahaemolyticus for seafood safety
Jung Hyen Lee, Minjin Oh, Byoung Sik Kim
SJR Q1Food Control
EcologyEnvironmental Science
9
Article|18 citations·2016
MARTX effector cross kingdom activation by Golgi-associated ADP-ribosylation factors
Byoung Sik Kim, K.J.F. Satchell
SJR Q1Cellular MicrobiologyOA

Vibrio vulnificus infects humans and causes lethal septicemia. The primary virulence factor is a multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin consisting of conserved repeats-containing regions and various effector domains. Recent genomic analyses for the newly emerged V. vulnificus biotype 3 strain revealed that its MARTX toxin has two previously unknown effector domains. Herein, we characterized one of these domains, Domain X (DmXVv ). A structure-based homology search revealed

EndocrinologyBiochemistry, Genetics and Molecular Biology
10
Article|18 citations·2017
Variable Virulence of Biotype 3 Vibrio vulnificus due to MARTX Toxin Effector Domain Composition
Byoung Sik Kim, Hannah E. Gavin, K.J.F. Satchell
SJR Q1mSphereOA

Vibrio vulnificus is a serious infection linked to climate change. The virulence capacity of these bacteria can vary by gene exchange, resulting in new variants of the primary virulence toxin. In this study, we tested whether the emergence of an epidemic strain of V. vulnificus with a novel toxin variant correlated with a change in virulence. We found that restoring the biotype 3 toxin variant to the putative progenitor-type toxin resulted in dramatically increased virulence, revealing that the

EndocrinologyBiochemistry, Genetics and Molecular Biology
11
Review|15 citations·2020
Spatiotemporal Regulation of Vibrio Exotoxins by HlyU and Other Transcriptional Regulators
Byoung Sik Kim
SJR Q1ToxinsOA

After invading a host, bacterial pathogens secrete diverse protein toxins to disrupt host defense systems. To ensure successful infection, however, pathogens must precisely regulate the expression of those exotoxins because uncontrolled toxin production squanders energy. Furthermore, inappropriate toxin secretion can trigger host immune responses that are detrimental to the invading pathogens. Therefore, bacterial pathogens use diverse transcriptional regulators to accurately regulate multiple e

EndocrinologyBiochemistry, Genetics and Molecular Biology
12
Review|14 citations·2023
Vibrio-infecting bacteriophages and their potential to control biofilm
Ana Cevallos-Urena, Jeong Yeon Kim, Byoung Sik Kim
SJR Q2Food Science and BiotechnologyOA
EcologyEnvironmental Science
13
Review|14 citations·2023
Bacterial Sialic Acid Catabolism at the Host–Microbe Interface
Jaeeun Kim, Byoung Sik Kim
SJR Q2The Journal of Microbiology

Sialic acids consist of nine-carbon keto sugars that are commonly found at the terminal end of mucins. This positional feature of sialic acids contributes to host cell interactions but is also exploited by some pathogenic bacteria in evasion of host immune system. Moreover, many commensals and pathogens use sialic acids as an alternative energy source to survive within the mucus-covered host environments, such as the intestine, vagina, and oral cavity. Among the various biological events mediate

Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|13 citations·2020
MARTX Toxin-Stimulated Interplay between Human Cells and Vibrio vulnificus
Byoung Sik Kim, Jong-Hwan Kim, Sang-Hyeon Choi, Shinhye Park, Eunyoung Lee, Serry Koh, Choong‐Min Ryu, Seon‐Young Kim, Myung Hee Kim
SJR Q1mSphereOA

V. vulnificus is an opportunistic human pathogen that can cause life-threatening sepsis in immunocompromised patients via seafood poisoning or wound infection. Among the toxic substances produced by this pathogen, the MARTX toxin greatly contributes to disease progression by promoting the dysfunction and death of host cells, which allows the bacteria to disseminate and colonize the host. In response to this, host cells mount a counterattack against the invaders by upregulating various defense ge

EndocrinologyBiochemistry, Genetics and Molecular Biology
15
Article|13 citations·2023
Bacteriophages PECP14, PECP20, and their endolysins as effective biocontrol agents for Escherichia coli O157:H7 and other foodborne pathogens
Minjin Oh, Ana Cevallos-Urena, Byoung Sik Kim
SJR Q1International Journal of Food Microbiology
EcologyEnvironmental Science

Research Areas

EndocrinologyEcologyMolecular BiologyNutrition and DieteticsImmunologyPublic Health, Environmental and Occupational Health

Byung Sik Kimの研究をNubintでさらに深く

この研究室の論文をアプリで開き、AIと共に読み、要約し、引用しましょう。