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Dae Won Kim

Yonsei University · 生化学・遺伝学・分子生物学

研究室紹介

Professor Dae Won Kim's research lab focuses on the molecular mechanisms underlying developmental biology, particularly in skeletal and neural systems. The lab investigates transcriptional regulation, signaling pathways such as BMP, Ihh, and NF-κB, and their roles in cell fate determination, chondrocyte differentiation, and developmental plasticity. A central theme is the interplay between transcription factors like Nkx3.2 and co-regulators (e.g., HDAC1, NEMO) in controlling cell survival, differentiation, and disease-relevant processes. The lab also explores behavioral and psychological aspects of clinical training, particularly in counseling and early termination in therapeutic relationships.

transcriptional regulationchondrocyte differentiationsignaling pathwaysdevelopmental plasticityNkx3.2

Research Overview

Papers
46
Total Citations
822
Papers (5y)
10
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
10total
2021
2022
2023
2024
2025
Citations per year (5y)
39total
20212022202320242025

Selected Papers

15
1
Article|111 citations·2006
Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway
Yoko Kuroki, Atsushi Toyoda, Hideki Noguchi, Todd D. Taylor, Takehiko Itoh, Dae‐Soo Kim, Dae‐Won Kim, Sang-Haeng Choi, Il-Chul Kim, Han Ho Choi, Yong‐Sung Kim, Yoko Satta
SJR Q1Nature Genetics
GeneticsBiochemistry, Genetics and Molecular Biology
2
Article|105 citations·2003
Smad-Dependent Recruitment of a Histone Deacetylase/Sin3A Complex Modulates the Bone Morphogenetic Protein-Dependent Transcriptional Repressor Activity of Nkx3.2
Dae‐Won Kim, Andrew B. Lassar
SJR Q2Molecular and Cellular BiologyOA

We have previously shown that Nkx3.2, a transcriptional repressor that is expressed in the sclerotome and developing cartilage, can activate the chondrocyte differentiation program in somitic mesoderm in a bone morphogenetic protein (BMP)-dependent manner. In this work, we elucidate how BMP signaling modulates the transcriptional repressor activity of Nkx3.2. We have found that Nkx3.2 forms a complex, in vivo, with histone deacetylase 1 (HDAC1) and Smad1 and -4 in a BMP-dependent manner. The hom

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|101 citations·2008
Acetylation of Sirt2 by p300 attenuates its deacetylase activity
Younho Han, Yun-Hye Jin, Yeon-Jin Kim, Bok-Yun Kang, Hyun-Jin Choi, Dae‐Won Kim, Chang‐Yeol Yeo, Kwang-Youl Lee
SJR Q2Biochemical and Biophysical Research Communications
Geriatrics and GerontologyMedicine
4
Article|100 citations·2008
Sirt2 interacts with 14-3-3 β/γ and down-regulates the activity of p53
Yun-Hye Jin, Yeon-Jin Kim, Dae‐Won Kim, Kwang‐Hyun Baek, Bok Yun Kang, Chang‐Yeol Yeo, Kwang-Youl Lee
SJR Q2Biochemical and Biophysical Research Communications
Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|61 citations·2010
ASB9 interacts with ubiquitous mitochondrial creatine kinase and inhibits mitochondrial function
Sang‐Hoon Kwon, Dongbum Kim, Jae Won Rhee, Jeong A Park, Dae‐Won Kim, Doo-Sik Kim, Younghee Lee, Hyung‐Joo Kwon
SJR Q1BMC BiologyOA

ASB9 interacts with the creatine kinase system and negatively regulates cell growth. The differential expression and function of ASB9 and ASB9DeltaSOCS may be a key factor in the growth of human cell lines and primary cells.

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|48 citations·2007
Constitutive RelA activation mediated by Nkx3.2 controls chondrocyte viability
Minsun Park, Yeryoung Yong, Seung-Won Choi, Jae Hwan Kim, Jong Eun Lee, Dae‐Won Kim
SJR Q1Nature Cell BiologyOA
Cancer ResearchBiochemistry, Genetics and Molecular Biology
7
Article|33 citations·2008
Immunostimulation and anti-DNA antibody production by backbone modified CpG-DNA
Dongbum Kim, Jae Won Rhee, Sanghoon Kwon, Wern-Joo Sohn, Younghee Lee, Dae‐Won Kim, Doo‐Sik Kim, Hyung‐Joo Kwon
SJR Q2Biochemical and Biophysical Research Communications
ImmunologyImmunology and Microbiology
8
Article|30 citations·2013
초심 상담수련생과 내담자가 겪는 조기종결 경험에 대한 개념도 연구
김영주, 장재현, 김대원, 이지원

본 연구에서는 조기종결을 경험한 초심 상담수련생과 내담자들이 왜 상담이 조기에 종결되었는가에 대해 지각하는 차별적 특징을 개념도(concept mapping) 방법으로 알아보았다. 이를 위해 수련생 7명과 내담자 9명을 대상으로 조기종결 경험에 관한 면접을 실시한 후 핵심문장을 추출하여 다차원척도법과 군집분석을 실시하였다. 연구결과 상담수련생이 지각한 조기종결 이유는 ‘상담자-내담자 요인’과 ‘독립성-상호관계성’의 두 개 차원으로 나누어 졌으며, ‘상담역량부족’, ‘내담자의 저항’, ‘상담자․내담자 간 부조화’, ‘상담자의 방어적 반응’ 등 총 네 개의 군집으로 나타났다. 반면 내담자의 조기종결 이유는 ‘상담자-내담자 요인’과 ‘상담과정-상담효과성 기대’의 두 가지 차원으로 구분되었으며, 두 개의 차원 상에 위치한 네 개의 군집은 ‘초기문제 해소 및 상황변화’, ‘상담자의 공감부족’, ‘상담자의 전문성에 대한 불신’, ‘자기공개에 대한 불편감’ 등 이었다. 본 연구는 조기종결의 이유

9
Article|27 citations·2012
Indian Hedgehog signalling triggers Nkx3.2 protein degradation during chondrocyte maturation
Seung-Won Choi, Da-Un Jeong, Jeong‐Ah Kim, Bo‐Young Lee, Kyu Sang Joeng, Fanxin Long, Dae‐Won Kim
SJR Q1Biochemical JournalOA

The Ihh (Indian Hedgehog) pathway plays an essential role in facilitating chondrocyte hypertrophy and bone formation during skeletal development. Nkx3.2 (NK3 homeobox 2) is initially induced in chondrocyte precursor cells, maintained in early-stage chondrocytes and down-regulated in terminal-stage chondrocytes. Consistent with these expression patterns, Nkx3.2 has been shown to enhance chondrocyte differentiation and cell survival, while inhibiting chondrocyte hypertrophy and apoptosis. Thus, in

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|18 citations·2016
A post-translational modification cascade employing HDAC9-PIASy-RNF4 axis regulates chondrocyte hypertrophy by modulating Nkx3.2 protein stability
Hye-Jeong Choi, Seongran Kwon, Dae‐Won Kim
SJR Q2Cellular Signalling
Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|15 citations·2017
Nkx3.2 induces oxygen concentration-independent and lysosome-dependent degradation of HIF-1α to modulate hypoxic responses in chondrocytes
Suhjean Im, Dae‐Won Kim
SJR Q2Cellular Signalling
Cancer ResearchBiochemistry, Genetics and Molecular Biology
12
Article|15 citations·2021
CREB mediates the C. elegans dauer polyphenism through direct and cell-autonomous regulation of TGF-β expression
JiSoo Park, Hye-Kyoung Oh, Do‐Young Kim, YongJin Cheon, Yeon-Ji Park, Hyeonjeong Hwang, Scott J. Neal, Abdul Rouf, Rebecca A. Butcher, Piali Sengupta, Dae‐Won Kim, Kyuhyung Kim
SJR Q1PLoS GeneticsOA

Animals can adapt to dynamic environmental conditions by modulating their developmental programs. Understanding the genetic architecture and molecular mechanisms underlying developmental plasticity in response to changing environments is an important and emerging area of research. Here, we show a novel role of cAMP response element binding protein (CREB)-encoding crh-1 gene in developmental polyphenism of C. elegans. Under conditions that promote normal development in wild-type animals, crh-1 mu

AgingBiochemistry, Genetics and Molecular Biology
13
Article|15 citations·2011
Exogenous Signal-Independent Nuclear IκB Kinase Activation Triggered by Nkx3.2 Enables Constitutive Nuclear Degradation of IκB-α in Chondrocytes
Yeryoung Yong, Seung-Won Choi, Hye-Jeong Choi, Hyung Wook Nam, Jeong‐Ah Kim, Da-Un Jeong, Don Young Kim, Yu Sam Kim, Dae‐Won Kim, Dae-Won Kim, Dae-Won Kim
SJR Q2Molecular and Cellular Biology

NF-κB is a multifunctional transcription factor involved in diverse biological processes. It has been well documented that NF-κB can be activated in response to various stimuli. While signal-inducible NF-κB activation mechanisms have been extensively characterized, exogenous signal-independent intrinsic NF-κB activation processes remain poorly understood. Here we show that IκB kinase β (IKKβ) can be intrinsically activated in the nucleus by a homeobox protein termed Nkx3.2 in the absence of exog

Cancer ResearchBiochemistry, Genetics and Molecular Biology
14
Article|14 citations·2010
Two Cases of Transfusion-related Acute Lung Injury Triggered by HLA and Anti-HLA Antibody Reaction
Ji Hyun Lee, Eun‐Suk Kang, Dae‐Won Kim
SJR Q2Journal of Korean Medical ScienceOA

Transfusion-related acute lung injury (TRALI) is a serious adverse transfusion reaction that is presented as acute hypoxemia and non-cardiogenic pulmonary edema, which develops during or within 6 hr of transfusion. Major pathogenesis of TRALI is known to be related with anti-HLA class I, anti-HLA class II, or anti-HNA in donor's plasma. However, anti-HLA or anti-HNA in recipient against transfused donor's leukocyte antigens also cause TRALI in minor pathogenesis and which comprises about 10% of

BiochemistryMedicine
15
Article|14 citations·2016
Cartilage-Specific and Cre-Dependent Nkx3.2 Overexpression In Vivo Causes Skeletal Dwarfism by Delaying Cartilage Hypertrophy
Da-Un Jeong, Je‐Yong Choi, Dae‐Won Kim
SJR Q1Journal of Cellular Physiology

Nkx3.2, the vertebrate homologue of Drosophila bagpipe, has been implicated as playing a role in chondrogenic differentiation. In brief, Nkx3.2 is initially expressed in chondrocyte precursor cells and later during cartilage maturation, its expression is diminished in hypertrophic chondrocytes. In addition to Nkx3.2 expression analyses, previous studies using ex vivo chick embryo cultures and in vitro cell cultures have suggested that Nkx3.2 can suppress chondrocyte hypertrophy. However, it has

RheumatologyMedicine

Research Areas

Molecular BiologyGeneticsCancer ResearchImmunologyAgingRheumatology

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