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Hong-Seok Son

Korea University · 農学・生物学

研究室紹介

Professor Hong-Seok Son's research lab specializes in microbial and metabolomic analysis, focusing on the interplay between gut microbiota, microbial metabolites, and host health. The lab investigates how dietary factors, fermentation processes, and microbial communities influence metabolic profiles in foods like wine, kimchi, and human body fluids such as saliva. Using advanced omics technologies—16S rRNA sequencing, NMR, GC-MS, and metabolomics—the lab explores the mechanisms linking microbiota to diseases such as obesity, neurodegenerative disorders, and halitosis.

gut microbiotametabolomicsfermented foodsmicrobiome-metabolite interactionhost-microbe interaction

Research Overview

Papers
83
Total Citations
1,138
Papers (5y)
43
Primary Field
農学・生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
43total
2021
2022
2023
2024
2025
Citations per year (5y)
504total
20212022202320242025

Selected Papers

15
1
Article|157 citations·2008
1H Nuclear Magnetic Resonance-Based Metabolomic Characterization of Wines by Grape Varieties and Production Areas
Hong-Seok Son, Ki Myong Kim, Frans van den Berg, Geum‐Sook Hwang, Won-Mok Park, Cherl‐Ho Lee, Young‐Shick Hong
SJR Q1Journal of Agricultural and Food Chemistry

(1)H NMR spectroscopy was used to investigate the metabolic differences in wines produced from different grape varieties and different regions. A significant separation among wines from Campbell Early, Cabernet Sauvignon, and Shiraz grapes was observed using principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA). The metabolites contributing to the separation were assigned to be 2,3-butanediol, lactate, acetate, proline, succinate, malate, glycerol, tartarate

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|107 citations·2021
Gut Microbiome and Metabolome Profiles Associated with High-Fat Diet in Mice
Jae-Kwon Jo, Seung-Ho Seo, Seong-Eun Park, Hyunwoo Kim, Eunju Kim, Jeong-Sang Kim, Ju‐Yeon Pyo, Kwang‐Moon Cho, Sun-Jae Kwon, Dae-Hun Park, Hong-Seok Son
SJR Q2MetabolitesOA

Obesity can be caused by microbes producing metabolites; it is thus important to determine the correlation between gut microbes and metabolites. This study aimed to identify gut microbiota-metabolomic signatures that change with a high-fat diet and understand the underlying mechanisms. To investigate the profiles of the gut microbiota and metabolites that changed after a 60% fat diet for 8 weeks, 16S rRNA gene amplicon sequencing and gas chromatography-mass spectrometry (GC-MS)-based metabolomic

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|91 citations·2018
Changes of microbial community and metabolite in kimchi inoculated with different microbial community starters
Seong-Eun Park, Seung-Ho Seo, Eun-Ju Kim, Sung‐Hoon Byun, Chang-Su Na, Hong-Seok Son
SJR Q1Food Chemistry
Food ScienceAgricultural and Biological Sciences
4
Review|65 citations·2023
Does kimchi deserve the status of a probiotic food?
Jeongmin Cha, Yeon Bee Kim, Seong-Eun Park, Se Hee Lee, Seong Woon Roh, Hong-Seok Son, Tae Woong Whon
SJR Q1Critical Reviews in Food Science and NutritionOA

Kimchi is a traditional fermented vegetable side dish in Korea and has become a global health food. Kimchi undergoes spontaneous fermentation, mainly by lactic acid bacteria (LAB) originating from its raw ingredients. Numerous LAB, including the genera <i>Leuconostoc</i>, <i>Weissella</i>, and <i>Lactobacillus</i>, participate in kimchi fermentation, reaching approximately 9-10 log colony forming units per gram or milliliter of food. The several health benefits of LAB (e.g., antioxidant and anti

Food ScienceAgricultural and Biological Sciences
5
Article|50 citations·2018
Effects of different fermentation temperatures on metabolites of Kimchi
Seong-Eun Park, Seung-Ho Seo, Eunju Kim, Chang-Su Na, Hong-Seok Son
SJR Q1Food Bioscience
Food ScienceAgricultural and Biological Sciences
6
Article|37 citations·2022
Long-term population dynamics of viable microbes in a closed ecosystem of fermented vegetables
Joon Yong Kim, Seong-Eun Park, Eun-Ju Kim, Seung-Ho Seo, Tae Woong Whon, Kwang‐Moon Cho, Sun Jae Kwon, Seong Woon Roh, Hong-Seok Son
SJR Q1Food Research International
Food ScienceAgricultural and Biological Sciences
7
Article|30 citations·2023
Comprehensive elucidation of the terroir of Korean kimchi through the study of recipes, metabolites, microbiota, and sensory characteristics
Do-Yeon Lee, Sung Hee Park, Seong-Eun Park, Eunju Kim, Hyun‐Woo Kim, Seung-Ho Seo, Kwang‐Moon Cho, Sun Jae Kwon, Tae Woong Whon, Sung Gi Min, Yun‐Jeong Choi, Seong Woon Roh
SJR Q1Food Research International
Food ScienceAgricultural and Biological Sciences
8
Article|27 citations·2021
Identification of Salivary Microorganisms and Metabolites Associated with Halitosis
Jae-Kwon Jo, Seung-Ho Seo, Seong-Eun Park, Hyun-Woo Kim, Eun-Ju Kim, Chang-Su Na, Kwang‐Moon Cho, Sun-Jae Kwon, Youngho Moon, Hong-Seok Son
SJR Q2MetabolitesOA

Halitosis is mainly caused by the action of oral microbes. The purpose of this study was to investigate the differences in salivary microbes and metabolites between subjects with and without halitosis. Of the 52 participants, 22 were classified into the halitosis group by the volatile sulfur compound analysis on breath samples. The 16S rRNA gene amplicon sequencing and metabolomics approaches were used to investigate the difference in microbes and metabolites in saliva of the control and halitos

PeriodonticsDentistry
9
Article|26 citations·2020
Initial storage of kimchi at room temperature alters its microbial and metabolite profiles
Eunju Kim, Seung-Ho Seo, Seong-Eun Park, Young-Woo Lim, Seong Woon Roh, Hong-Seok Son
SJR Q1LWT
Food ScienceAgricultural and Biological Sciences
10
Article|23 citations·2022
Effects of Donepezil Treatment on Brain Metabolites, Gut Microbiota, and Gut Metabolites in an Amyloid Beta-Induced Cognitive Impairment Mouse Pilot Model
Jae-Kwon Jo, Gihyun Lee, Cong Duc Nguyen, Seong-Eun Park, Eun-Ju Kim, Hyun‐Woo Kim, Seung-Ho Seo, Kwang‐Moon Cho, Sun Jae Kwon, Jae‐Hong Kim, Hong-Seok Son
SJR Q1MoleculesOA

Accumulated clinical and biomedical evidence indicates that the gut microbiota and their metabolites affect brain function and behavior in various central nervous system disorders. This study was performed to investigate the changes in brain metabolites and composition of the fecal microbial community following injection of amyloid β (Aβ) and donepezil treatment of Aβ-injected mice using metataxonomics and metabolomics. Aβ treatment caused cognitive dysfunction, while donepezil resulted in the s

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|22 citations·2023
Machine learning model for predicting age in healthy individuals using age-related gut microbes and urine metabolites
Seung-Ho Seo, Chang-Su Na, Seong-Eun Park, Eun-Ju Kim, W.-G. Kim, Chunkyun Park, Seungmi Oh, Yanghee You, Mee‐Hyun Lee, Kwang‐Moon Cho, Sun Jae Kwon, Tae Woong Whon
SJR Q1Gut MicrobesOA

Age-related gut microbes and urine metabolites were investigated in 568 healthy individuals using metataxonomics and metabolomics. The richness and evenness of the fecal microbiota significantly increased with age, and the abundance of 16 genera differed between the young and old groups. Additionally, 17 urine metabolites contributed to the differences between the young and old groups. Among the microbes that differed by age, Bacteroides and Prevotella 9 were confirmed to be correlated with some

Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|22 citations·2019
Metabolomic Approach for Discrimination of Cultivation Age and Ripening Stage in Ginseng Berry Using Gas Chromatography-Mass Spectrometry
Seong‐Eun Park, Seung-Ho Seo, Eun-Ju Kim, Dae-Hun Park, Kyung-Mok Park, Seung‐Sik Cho, Hong-Seok Son
SJR Q1MoleculesOA

The purpose of this study was to analyze metabolic differences of ginseng berries according to cultivation age and ripening stage using gas chromatography-mass spectrometry (GC-MS)-based metabolomics method. Ginseng berries were harvested every week during five different ripening stages of three-year-old and four-year-old ginseng. Using identified metabolites, a random forest machine learning approach was applied to obtain predictive models for the classification of cultivation age or ripening s

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|22 citations·2013
Optimal Extraction Conditions to Produce Rosemary Extracts with Higher Phenolic Content and Antioxidant Activity
Chang‐Yong Lee, Ki-Myeong Kim, Hong-Seok Son
SJR Q4Korean Journal of Food Science and TechnologyOA

본 연구에서는 로즈마리의 항산화 물질을 최대로 추출할 수 있는 최적의 추출 조건을 확립하였다. 열수 추출의 경우에는 <TEX>$90^{\circ}C$</TEX>, 30분 추출할 경우 항산화력(<TEX>$IC_{50}$</TEX> 값이 4.49 g DM/L)과 총 페놀함량(28.30 mg GAE/g DM)이 다른 온도와 시간보다 높은 수치를 나타내었다. 에탄올 추출의 경우에는 50%에탄올, <TEX>$70^{\circ}C$</TEX>, 10분의 경우가 항산화력(<TEX>$IC_{50}$</TEX> 값이 2.60 g DM/L), 총 페놀함량(40.28 mg GAE/g DM)이 다른 농도와 온도, 시간보다 높은 결과를 나타내었다 메탄올 추출 결과는 75% 메탄올, <TEX>$60^{\circ}C$</TEX>, 30분의 경우가 항산화력(<TEX>$IC_{50}$</TEX> 값이 2.31 g DM/L), 총 페놀함량(57.22 GAE/g DM)이 다른 농도와 온도, 시간보다 높은 수치를 나타

BiochemistryMedicine
14
Article|22 citations·2024
A comparative study of the physicochemical, microbial, and metabolic profiling of kimchi during long-term fermentation under varying salinity conditions
Do-Yeon Lee, Seong-Eun Park, Eun-Ju Kim, Hyun‐Woo Kim, Kwang‐Moon Cho, Sun Jae Kwon, Seong Woon Roh, Suryang Kwak, Tae Woong Whon, Hong-Seok Son
SJR Q1LWTOA

In fermented foods, including kimchi, salinity is a crucial factor that influences preservation and quality. We aimed to investigate the physicochemical characteristics, microbiota, and metabolites of kimchi fermented at varying salinities over 200 days. Kimchi cabbages were soaked in 3%, 10%, and 20% (w/v) saline solutions for 10 h to prepare low-, middle-, and high-salinity kimchi, respectively. Although the salinity level of kimchi had a significant impact on its appearance, microbial communi

Food ScienceAgricultural and Biological Sciences
15
Article|21 citations·2016
Metabolite profiling of fermented ginseng extracts by gas chromatography mass spectrometry
Seong‐Eun Park, Seung-Ho Seo, Kyoung In Lee, Chang-Su Na, Hong-Seok Son
SJR Q1Journal of Ginseng ResearchOA

These results suggest that a metabolomics approach based on GC-MS can be a useful tool to understand ginseng fermentation and evaluate the fermentative characteristics of starter cultures.

Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Food ScienceMolecular BiologyPharmacologyComplementary and alternative medicinePlant ScienceBiomedical Engineering

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