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Jaeseong Lee

Korea Advanced Institute of Science and Technology · 生化学・遺伝学・分子生物学

研究室紹介

Professor Jaeseong Lee's research lab specializes in advanced genetic engineering and synthetic biology approaches to optimize Chinese hamster ovary (CHO) and human cell lines for the efficient production of therapeutic proteins. The lab focuses on targeted genome editing using CRISPR/Cas9 technology to achieve precise, stable, and high-level transgene expression at genomic safe harbors, while also exploring cellular stress responses such as apoptosis and autophagy to enhance cell line performance. Key research directions include improving homology-directed repair efficiency, developing marker-free genome editing strategies, and engineering isogenic cell lines with consistent glycosylation and productivity profiles. The lab aims to establish robust platforms for industrial biomanufacturing by integrating molecular tools with systems-level understanding of cell physiology.

CRISPR/Cas9targeted integrationCHO cell engineeringgenome editingtherapeutic protein production

Research Overview

Papers
103
Total Citations
2,448
Papers (5y)
19
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
19total
2022
2023
2024
2025
2026
Citations per year (5y)
109total
20222023202420252026

Selected Papers

15
1
Article|202 citations·2015
Site-specific integration in CHO cells mediated by CRISPR/Cas9 and homology-directed DNA repair pathway
Jae Seong Lee, Thomas Beuchert Kallehauge, Lasse Ebdrup Pedersen, Helene Faustrup Kildegaard
SJR Q1Scientific ReportsOA

Chinese hamster ovary (CHO) cells are the most widely used mammalian hosts for production of therapeutic proteins. However, development of recombinant CHO cell lines has been hampered by unstable and variable transgene expression caused by random integration. Here we demonstrate efficient targeted gene integration into site-specific loci in CHO cells using CRISPR/Cas9 genome editing system and compatible donor plasmid harboring a gene of interest (GOI) and short homology arms. This strategy has

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Review|116 citations·2015
CRISPR/Cas9‐mediated genome engineering of CHO cell factories: Application and perspectives
Jae Seong Lee, Lise Marie Grav, Nathan E. Lewis, Helene Faustrup Kildegaard
SJR Q2Biotechnology Journal

Chinese hamster ovary (CHO) cells are the most widely used production host for therapeutic proteins. With the recent emergence of CHO genome sequences, CHO cell line engineering has taken on a new aspect through targeted genome editing. The bacterial clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (Cas9) system enables rapid, easy and efficient engineering of mammalian genomes. It has a wide range of applications from modification of individual genes

Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Review|71 citations·2019
Mitigating Clonal Variation in Recombinant Mammalian Cell Lines
Jae Seong Lee, Helene Faustrup Kildegaard, Nathan E. Lewis, Gyun Min Lee
SJR Q1Trends in biotechnology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|65 citations·2016
Accelerated homology‐directed targeted integration of transgenes in Chinese hamster ovary cells via CRISPR/Cas9 and fluorescent enrichment
Jae Seong Lee, Lise Marie Grav, Lasse Ebdrup Pedersen, Gyun Min Lee, Helene Faustrup Kildegaard
SJR Q2Biotechnology and Bioengineering

Targeted gene integration into site-specific loci can be achieved in Chinese hamster ovary (CHO) cells via CRISPR/Cas9 genome editing technology and the homology-directed repair (HDR) pathway. The low efficiency of HDR often requires antibiotic selection, which limits targeted integration of multiple genes at multiple sites. To improve HDR-mediated targeted integration, while avoiding the use of selection markers, chemical treatment for increased HDR, and fluorescent enrichment of genome-edited

Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|58 citations·2020
Comprehensive Analysis of Genomic Safe Harbors as Target Sites for Stable Expression of the Heterologous Gene in HEK293 Cells
Seunghyeon Shin, Su Hyun Kim, Sung Wook Shin, Lise Marie Grav, Lasse Ebdrup Pedersen, Jae Seong Lee, Gyun Min Lee
SJR Q1ACS Synthetic Biology

Human cell lines are being increasingly used as host cells to produce therapeutic glycoproteins, due to their human glycosylation machinery. In an attempt to develop a platform for generating isogenic human cell lines producing therapeutic proteins based on targeted integration, three well-known human genomic safe harbors (GSHs)-AAVS1, CCR5, and human ROSA26 loci-were evaluated with respect to the transgene expression level and stability in human embryonic kidney (HEK293) cells. Among the three

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|53 citations·2013
Anti‐cell death engineering of CHO cells: Co‐overexpression of Bcl‐2 for apoptosis inhibition, Beclin‐1 for autophagy induction
Jae Seong Lee, Tae Kwang Ha, Jin Hyoung Park, Gyun Min Lee
SJR Q2Biotechnology and BioengineeringOA

Genetic engineering approaches to inhibit cell death in Chinese hamster ovary (CHO) cell cultures have been limited primarily to anti-apoptosis engineering. Recently, autophagy has received attention as a new anti-cell death engineering target in addition to apoptosis. In order to achieve a more efficient protection of cells from the stressful culture conditions, the simultaneous targeting of anti-apoptosis and pro-autophagy in CHO cells (DG44) was attempted by co-overexpressing an anti-apoptoti

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Review|47 citations·2011
Monitoring of autophagy in Chinese hamster ovary cells using flow cytometry
Jae Seong Lee, Gyun Min Lee
SJR Q1Methods
Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|45 citations·2011
Effect of sodium butyrate on autophagy and apoptosis in Chinese hamster ovary cells
Jae Seong Lee, Gyun Min Lee
SJR Q2Biotechnology Progress

Sodium butyrate (NaBu), which is widely used in recombinant Chinese hamster ovary cell (rCHO) cultures for high-level expression of therapeutic proteins, is known to induce apoptosis in a dose-dependent manner. Lately, the significance of autophagy has increased in the field of CHO cell culture due to the fact that autophagy is related to the programmed cell death mechanism. To determine the effect of NaBu on autophagy as well as apoptosis of rCHO cells, rCHO cells producing erythropoietin were

EpidemiologyMedicine
9
Article|45 citations·2018
Revealing Key Determinants of Clonal Variation in Transgene Expression in Recombinant CHO Cells Using Targeted Genome Editing
Jae Seong Lee, Jin Hyoung Park, Tae Kwang Ha, Mojtaba Samoudi, Nathan E. Lewis, Bernhard Ø. Palsson, Helene Faustrup Kildegaard, Gyun Min Lee
SJR Q1ACS Synthetic Biology

Generation of recombinant Chinese hamster ovary (rCHO) cell lines is critical for the production of therapeutic proteins. However, the high degree of phenotypic heterogeneity among generated clones, referred to as clonal variation, makes the rCHO cell line development process inefficient and unpredictable. Here, we investigated the major genomic causes of clonal variation. We found the following: (1) consistent with previous studies, a strong variation in rCHO clones in response to hypothermia (

Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|42 citations·2012
Rapamycin treatment inhibits CHO cell death in a serum‐free suspension culture by autophagy induction
Jae Seong Lee, Gyun Min Lee
SJR Q2Biotechnology and Bioengineering

Rapamycin, a specific mTOR inhibitor, has been used as a chemical activator in autophagy research both in vitro and in vivo. Recently, autophagy has received attention as an anti-cell death engineering target in addition to apoptosis in the Chinese hamster ovary (CHO) cell engineering field. Here, the effect of rapamycin and the subsequent autophagy induction is investigated on two CHO cell lines, DG44 host and an antibody-producing recombinant CHO (rCHO), in a serum-free suspension culture. In

Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Review|31 citations·2012
Current state and perspectives on erythropoietin production
Jae Seong Lee, Tae Kwang Ha, Seung Joo Lee, Gyun Min Lee
SJR Q1Applied Microbiology and Biotechnology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
12
Article|29 citations·2020
CHO Cell Line Development and Engineering via Site-specific Integration: Challenges and Opportunities
Sung Wook Shin, Jae Seong Lee
SJR Q2Biotechnology and Bioprocess Engineering
Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|26 citations·2022
Endogenous BiP reporter system for simultaneous identification of ER stress and antibody production in Chinese hamster ovary cells
Minji Kyeong, Jae Seong Lee
SJR Q1Metabolic Engineering
Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|24 citations·2021
Streamlined Human Cell-Based Recombinase-Mediated Cassette Exchange Platform Enables Multigene Expression for the Production of Therapeutic Proteins
Seunghyeon Shin, Su Hyun Kim, Jae Seong Lee, Gyun Min Lee
SJR Q1ACS Synthetic Biology

A platform, based on targeted integration of transgenes using recombinase-mediated cassette exchange (RMCE) coupled with CRISPR/Cas9, is increasingly being used for the development of mammalian cell lines that produce therapeutic proteins, because of reduced clonal variation and predictable transgene expression. However, low efficiency of the RMCE process has hampered its application in multicopy or multisite integration of transgenes. To improve RMCE efficiency, nuclear transport of RMCE compon

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Article|23 citations·2012
Differential induction of autophagy in caspase-3/7 down-regulating and Bcl-2 overexpressing recombinant CHO cells subjected to sodium butyrate treatment
Jae Seong Lee, Yeon Jung Kim, Che Lin Kim, Gyun Min Lee
SJR Q2Journal of Biotechnology
EpidemiologyMedicine

Research Areas

Molecular BiologyPharmacologyEpidemiologySurgeryBiomedical EngineeringCardiology and Cardiovascular Medicine

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