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Jong-Hee Kim

Pohang University of Science and Technology · 農学・生物学

研究室紹介

Professor Jong-Hee Kim's research lab focuses on the molecular mechanisms underlying plant stress responses, with a central emphasis on the ubiquitin-proteasome system (UPS) and its regulatory E3 ubiquitin ligases. The lab investigates how E3 ligases, including RING and U-box types, modulate key stress signaling pathways—particularly those involving abscisic acid (ABA) and brassinosteroid (BR) hormones—thereby influencing plant development and resilience under abiotic and biotic stresses. Key studies in model plants like Arabidopsis and staple crops such as rice and barley have revealed novel regulatory nodes, such as OsPUB24 and AtAIRP2, that control protein stability and stress adaptation. The lab integrates molecular genetics, biochemistry, and cell biology to uncover conserved and crop-specific mechanisms of stress tolerance.

ubiquitin-proteasome systemE3 ubiquitin ligasesabiotic stressplant hormone signalingstress tolerance

Research Overview

Papers
32
Total Citations
1,019
Papers (5y)
14
Primary Field
農学・生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
14total
2022
2023
2024
2025
2026
Citations per year (5y)
317total
20222023202420252026

Selected Papers

15
1
Article|220 citations·2022
Increasing the resilience of plant immunity to a warming climate
Jong Hum Kim, Christian Danve M. Castroverde, Shuai Huang, Chao Li, Richard Hilleary, Adam Seroka, Reza Sohrabi, Diana Medina-Yerena, Bethany Huot, Jie Wang, Kinya Nomura, Sharon K. Marr
SJR Q1NatureOA

Abstract Extreme weather conditions associated with climate change affect many aspects of plant and animal life, including the response to infectious diseases. Production of salicylic acid (SA), a central plant defence hormone 1–3 , is particularly vulnerable to suppression by short periods of hot weather above the normal plant growth temperature range via an unknown mechanism 4–7 . Here we show that suppression of SA production in Arabidopsis thaliana at 28 °C is independent of PHYTOCHROME B 8,

Plant ScienceAgricultural and Biological Sciences
2
Article|157 citations·2013
The Arabidopsis RING E3 Ubiquitin Ligase AtAIRP3/LOG2 Participates in Positive Regulation of High-Salt and Drought Stress Responses
Jong Hum Kim, Woo Taek Kim
SJR Q1PLANT PHYSIOLOGYOA

Really Interesting New Gene (RING) E3 ubiquitin ligases have been implicated in cellular responses to the stress hormone abscisic acid (ABA) as well as to environmental stresses in higher plants. Here, an ABA-insensitive RING protein3 (atairp3) loss-of-function mutant line in Arabidopsis (Arabidopsis thaliana) was isolated due to its hyposensitivity to ABA during its germination stage as compared with wild-type plants. AtAIRP3 contains a single C3HC4-type RING motif, a putative myristoylation si

Plant ScienceAgricultural and Biological Sciences
3
Article|93 citations·2019
Classification of barley U-box E3 ligases and their expression patterns in response to drought and pathogen stresses
Moon Young Ryu, Seok Keun Cho, Yourae Hong, Jin-Ho Kim, Jong Hum Kim, Gu Min Kim, Yan‐Jun Chen, Eva Knoch, Birger Lindberg Møller, Woo Taek Kim, Michael F. Lyngkjær, Seong Wook Yang
SJR Q1BMC GenomicsOA

BACKGROUND: Controlled turnover of proteins as mediated by the ubiquitin proteasome system (UPS) is an important element in plant defense against environmental and pathogen stresses. E3 ligases play a central role in subjecting proteins to hydrolysis by the UPS. Recently, it has been demonstrated that a specific class of E3 ligases termed the U-box ligases are directly associated with the defense mechanisms against abiotic and biotic stresses in several plants. However, no studies on U-box E3 li

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|66 citations·2019
OsBZR1 turnover mediated by OsSK22‐regulated U‐box E3 ligase OsPUB24 in rice BR response
Hye Jo Min, Li Cui, Tae Rin Oh, Jong Hum Kim, Tae‐Wuk Kim, Woo Taek Kim
SJR Q1The Plant JournalOA

Oryza sativa BRASSINAZOLE RESISTANT 1 (OsBZR1) is the closest rice homolog of the Arabidopsis BZR1 and bri1-EMS-SUPPRESSOR 1 (BES1)/BZR2 transcription factors. OsBZR1 plays a central role in the rice brassinosteroid signaling pathway. Despite its functional importance, the control mechanism by which the cellular stability of OsBZR1 is regulated has not yet been fully elucidated. Here, we report that a rice U-box E3 ubiquitin (Ub) ligase OsPUB24 acts as a negative regulator in the BR signaling pa

Plant ScienceAgricultural and Biological Sciences
5
Review|65 citations·2021
Crops of the future: building a climate-resilient plant immune system
Jong Hum Kim, Richard Hilleary, Adam Seroka, Sheng Yang He
SJR Q1Current Opinion in Plant BiologyOA
Plant ScienceAgricultural and Biological Sciences
6
Article|65 citations·2017
AtAIRP2 E3 Ligase Affects ABA and High-Salinity Responses by Stimulating Its ATP1/SDIRIP1 Substrate Turnover
Tae Rin Oh, Jong Hum Kim, Seok Keun Cho, Moon Young Ryu, Seong Wook Yang, Woo Taek Kim
SJR Q1PLANT PHYSIOLOGYOA

AtAIRP2 is a cytosolic RING-type E3 ubiquitin ligase that positively regulates an abscisic acid (ABA) response in Arabidopsis (Arabidopsis thaliana). Yeast two-hybrid screening using AtAIRP2 as bait identified ATP1 (AtAIRP2 Target Protein1) as a substrate of AtAIRP2. ATP1 was found to be identical to SDIRIP1, which was reported recently to be a negative factor in ABA signaling and a target protein of the RING E3 ligase SDIR1. Accordingly, ATP1 was renamed ATP1/SDIRIP1. A specific interaction bet

Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Review|61 citations·2017
RING E3 ligases: key regulatory elements are involved in abiotic stress responses in plants
Seok Keun Cho, Moon Young Ryu, Jong Hum Kim, Jeong Soo Hong, Tae Rin Oh, Woo Taek Kim, Seong Wook Yang
SJR Q1BMB ReportsOA

Plants are constantly exposed to a variety of abiotic stresses, such as drought, heat, cold, flood, and salinity. To survive under such unfavorable conditions, plants have evolutionarily developed their own resistant-mechanisms. For several decades, many studies have clarified specific stress response pathways of plants through various molecular and genetic studies. In particular, it was recently discovered that ubiquitin proteasome system (UPS), a regulatory mechanism for protein turn over, is

Molecular BiologyBiochemistry, Genetics and Molecular Biology
8
Article|60 citations·2020
Arabidopsis RING E3 ubiquitin ligase JUL1 participates in ABA‐mediated microtubule depolymerization, stomatal closure, and tolerance response to drought stress
Seong Gwan Yu, Jong Hum Kim, Na Hyun Cho, Tae Rin Oh, Woo Taek Kim
SJR Q1The Plant JournalOA

SUMMARY Ubiquitination is a critical post‐translational protein modification that has been implicated in diverse cellular processes, including abiotic stress responses, in plants. In the present study, we identified and characterized a T‐DNA insertion mutant in the At5g10650 locus. Compared to wild‐type Arabidopsis plants, at5g10650 progeny were hyposensitive to ABA at the germination stage. At5g10650 possessed a single C‐terminal C3HC4‐type Really Interesting New Gene (RING) motif, which was es

Molecular BiologyBiochemistry, Genetics and Molecular Biology
9
Article|50 citations·2018
Arabidopsis group XIV ubiquitin-conjugating enzymes AtUBC32, AtUBC33, and AtUBC34 play negative roles in drought stress response
Min Yong Ahn, Tae Rin Oh, Dong Hye Seo, Jong Hum Kim, Na Hyun Cho, Woo Taek Kim
SJR Q1Journal of Plant Physiology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
10
Article|33 citations·2023
Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana
Junbin Chen, Lei Li, Jong Hum Kim, Benjamin Neuhäuser, Mingyu Wang, Michael Thelen, Richard Hilleary, Yuan Chi, Luyang Wei, Kavita Venkataramani, Moisés Expósito‐Alonso, Chang Liu
SJR Q1Molecular CellOA
Plant ScienceAgricultural and Biological Sciences
11
Review|33 citations·2023
Molecular regulation of the salicylic acid hormone pathway in plants under changing environmental conditions
Christina A. M. Rossi, Eric J. R. Marchetta, Jong Hum Kim, Christian Danve M. Castroverde
SJR Q1Trends in Biochemical SciencesOA
Plant ScienceAgricultural and Biological Sciences
12
Article|20 citations·2017
MPSR1 is a cytoplasmic PQC E3 ligase for eliminating emergent misfolded proteins in Arabidopsis thaliana
Jong Hum Kim, Seok Keun Cho, Tae Rin Oh, Moon Young Ryu, Seong Wook Yang, Woo Taek Kim
SJR Q1Proceedings of the National Academy of SciencesOA

Ubiquitin E3 ligases are crucial for eliminating misfolded proteins before they form cytotoxic aggregates that threaten cell fitness and survival. However, it remains unclear how emerging misfolded proteins in the cytoplasm can be selectively recognized and eliminated by E3 ligases in plants. We found that Misfolded Protein Sensing RING E3 ligase 1 (MPSR1) is an indispensable E3 ligase required for plant survival after protein-damaging stress. Under no stress, MPSR1 is prone to rapid degradation

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|15 citations·2020
AtKPNB1, an Arabidopsis importin-β protein, is downstream of the RING E3 ubiquitin ligase AtAIRP1 in the ABA-mediated drought stress response
Tae Rin Oh, Seong Gwan Yu, Hee Woong Yang, Jong Hum Kim, Woo Taek Kim
SJR Q1Planta
Molecular BiologyBiochemistry, Genetics and Molecular Biology
14
Article|12 citations·2019
Inverse Correlation Between MPSR1 E3 Ubiquitin Ligase and HSP90.1 Balances Cytoplasmic Protein Quality Control
Jong Hum Kim, Tae Rin Oh, Seok Keun Cho, Seong Wook Yang, Woo Taek Kim
SJR Q1PLANT PHYSIOLOGYOA

MISFOLDED PROTEIN SENSING RING1 (MPSR1) is a chaperone-independent E3 ubiquitin ligase that participates in protein quality control by eliminating misfolded proteins in Arabidopsis (<i>Arabidopsis thaliana</i>). Here, we report that in the early stages of proteotoxic stress, cellular levels of MPSR1 increased immediately, whereas levels of HEAT SHOCK PROTEIN90.1 (AtHSP90.1) were unaltered despite massively upregulated transcription. At this stage, the gene-silencing pathway mediated by microRNA

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
Review|12 citations·2020
Diversity, Function and Regulation of Cell Surface and Intracellular Immune Receptors in Solanaceae
Jong Hum Kim, Christian Danve M. Castroverde
SJR Q1PlantsOA

The first layer of the plant immune system comprises plasma membrane-localized receptor proteins and intracellular receptors of the nucleotide-binding leucine-rich repeat protein superfamily. Together, these immune receptors act as a network of surveillance machines in recognizing extracellular and intracellular pathogen invasion-derived molecules, ranging from conserved structural epitopes to virulence-promoting effectors. Successful pathogen recognition leads to physiological and molecular cha

Plant ScienceAgricultural and Biological Sciences

Research Areas

Plant ScienceMolecular BiologyMaterials ChemistryMarketingCell BiologyCancer Research

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