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Jong Kim

Pohang University of Science and Technology · 情報科学

研究室紹介

Professor Jong Kim's research lab specializes in computational biology and bioinformatics, focusing on single-cell genomics, statistical modeling of high-throughput 'omics' data, and systems biology approaches to understand gene regulation and disease mechanisms. The lab develops advanced statistical and machine learning methods to disentangle biological signals from technical noise in single-cell RNA sequencing, with applications in allele-specific expression, transcriptional dynamics, and non-coding RNA discovery. Additionally, the lab applies data-driven modeling to real-world systems, such as intelligent video surveillance and information systems in hospitality, demonstrating a strong interdisciplinary approach. Their work bridges computational methodology with biological and technological applications.

single-cell genomicsstatistical modelingnon-coding RNAssystems biologycomputational biology

Research Overview

Papers
122
Total Citations
1,656
Papers (5y)
11
Primary Field
情報科学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
11total
2020
2021
2022
2024
2025
Citations per year (5y)
85total
20202021202220242025

Selected Papers

15
1
Article|316 citations·2007
Power Aware Scheduling of Bag-of-Tasks Applications with Deadline Constraints on DVS-enabled Clusters
Kyong Hoon Kim, Rajkumar Buyya, Jong Kim

Power-aware scheduling problem has been a recent issue in cluster systems not only for operational cost due to electricity cost, but also for system reliability. As recent commodity processors support multiple operating points under various supply voltage levels, Dynamic Voltage Scaling (DVS) scheduling algorithms can reduce power consumption by controlling appropriate voltage levels. In this paper, we provide power-aware scheduling algorithms for bag-of-tasks applications with deadline constrai

Hardware and ArchitectureComputer Science
2
Article|179 citations·2012
WarningBird: Detecting Suspicious URLs in Twitter Stream.
Sang-Ho Lee, Jong Kim
Network and Distributed System Security Symposium

Twitter can suffer from malicious tweets containing suspicious URLs for spam, phishing, and malware distribution. Previous Twitter spam detection schemes have used account features such as the ratio of tweets containing URLs and the account creation date, or relation features in the Twitter graph. Malicious users, however, can easily fabricate account features. Moreover, extracting relation features from the Twitter graph is time and resource consuming. Previous suspicious URL detection schemes

Information SystemsComputer Science
3
Article|117 citations·1994
Hypercube communication delay with wormhole routing
Jong Kim, Chita R. Das
SJR Q1IEEE Transactions on Computers

We present an analytical model for the performance evaluation of hypercube computers. This analysis is aimed at modeling a deadlock-free wormhole routing scheme prevalent on second generation hypercube systems. Probability of blocking and average message delay are the two performance measures discussed. We start with the communication traffic to find the probability of blocking. The traffic analysis can capture any message destination distribution. Next, we find the average message delay that co

Computer Networks and CommunicationsComputer Science
4
Article|53 citations·2021
AI and Text-Mining Applications for Analyzing Contractor’s Risk in Invitation to Bid (ITB) and Contracts for Engineering Procurement and Construction (EPC) Projects
Su Seok Choi, So Young Choi, Jong Kim, Eul‐Bum Lee
SJR Q1EnergiesOA

Contractors responsible for the whole execution of engineering, procurement, and construction (EPC) projects are exposed to multiple risks due to various unbalanced contracting methods such as lump-sum turn-key and low-bid selection. Although systematic risk management approaches are required to prevent unexpected damage to the EPC contractors in practice, there were no comprehensive digital toolboxes for identifying and managing risk provisions for ITB and contract documents. This study describ

Management Science and Operations ResearchDecision Sciences
5
Article|51 citations·2015
CrowdTarget
Jonghyuk Song, Sang-Ho Lee, Jong Kim

Malicious crowdsourcing, also known as crowdturfing, has become an important security problem. However, detecting accounts performing crowdturfing tasks is challenging because human workers manage the crowdturfing accounts such that their characteristics are similar with the characteristics of normal accounts. In this paper, we propose a novel crowdturfing detection method, called CrowdTarget, that aims to detect target objects of crowdturfing tasks (e.g., post, page, and URL) not accounts perfo

Information SystemsComputer Science
6
Article|48 citations·2017
FACT
Sanghak Lee, Jiwon Choi, Jihun Kim, Beumjin Cho, Sangho Lee, Hanjun Kim, Jong Kim

Improvement in the security and availability is important for the success of the Internet of Things (IoT). Given that recent IoT devices are likely to have multiple functionalities and support third-party applications, this goal becomes challenging to achieve. Through an in-depth investigation of existing IoT frameworks, we focused on two inherent security flaws in their design caused by their device-centric approaches: (1) coarse-grained access control and (2) lack of resource isolation. Becaus

Signal ProcessingComputer Science
7
Article|44 citations·2002
A real-time communication method for wormhole switching networks
Byungjae Kim, Jong Kim, Sungje Hong, Sunggu Lee

In this paper we propose a real-time communication scheme that can be used in general point-to-point real-time multicomputer systems with wormhole switching. Real-time communication should satisfy the two requirements of predictability and priority handling. Since traditional wormhole switching does not support priority handling which is essential in real-time computing, flit-level preemption is adopted in our wormhole switching. Also, we develop an algorithm to determine the message transmissio

Computer Networks and CommunicationsComputer Science
8
Article|39 citations·2008
Reducing IPTV channel zapping time based on viewer’s surfing behavior and preference
Yuna Kim, Jae-Keun Park, Hongjun Choi, Sang-Ho Lee, Hee-Jin Park, Jong Kim, Z.H. Lee, Kwangil Ko

This paper presents a method of prejoining the expected next TV channels for reducing IPTV channel zapping time with a consideration of the channel surfing behavior and the particular preference of each viewer. In this method, a home gateway of multicast protocol proxy for set-top boxes (STB) prejoins the expected and preferred channels based on aggregated data from STBs. The experimental results show that the method improves the prediction accuracy of prejoin channels with little network bandwi

Computer Vision and Pattern RecognitionComputer Science
9
Article|31 citations·1989
A Processor Allocation Scheme for Hypercube Computers.
Jong Kim, Chita R. Das, Woei Lin
Proceedings of the International Conference on Parallel Processing
Computer Networks and CommunicationsComputer Science
10
book|13 citations·1994
A top-down processor allocation scheme for hypercube computers
Jong Kim, Chita R. Das, Woei Lin
IEEE Computer Society Press eBooks

An efficient processor allocation policy is presented for hypercube computers. The allocation policy is called free list since it maintains a list of free subcubes available in the system. An incoming request of dimension k (2/sup k/ nodes) is allocated by finding a free subcube of dimension k or by decomposing an available subcube of dimension greater than k. This free list policy uses a top-down allocation rule in contrast to the bottom-up approach used by the previous bit-map allocation algor

Hardware and ArchitectureComputer Science
11
Article|12 citations·2002
Performance evaluation of dependable real-time communication with elastic QoS
Jong Kim, Kang G. Shin

When a client requests a real-time connection that requires an excessive amount of resources and/or a very high level of QoS, the network service provider may have to reject the request, and only a small number of connections could be accepted. On the other hand, if the client requests only the minimum level of QoS, he may receive only a bare-bones service even when there are plenty of resources available. One way of utilizing resources efficiently is to specify flexible (elastic) QoS requiremen

Hardware and ArchitectureComputer Science
12
Article|10 citations·2022
Fuzzing with automatically controlled interleavings to detect concurrency bugs
Youngjoo Ko, Bin Zhu, Jong Kim
SJR Q1Journal of Systems and Software
SoftwareComputer Science
13
Article|8 citations·2017
A class of generalized operator equilibrium problems
Jong Kim, Abdul Raouf
SJR Q2FilomatOA

In this paper, we consider a class of generalized operator equilibrium problems and derive a Minty type lemma for this class of problems. Further, we establish some existence theorems for the generalized operator equilibrium problems. The theorems presented in this paper generalize and unify many well-known results in the literature.

Computational Theory and MathematicsComputer Science
14
Article|4 citations·1991
On subcube dependability in a hypercube
Jong Kim, Chita R. Das

In this paper, we present an analytical model for computing the dependability of hypercube systems. The model, referred to as task-based dependability (TBD), is developed under the assumption that a task needs at least an m-cube (m < n) in an n-cube for its execution. Two probabilistic terms are required for computing this dependability. The first is the probability of any x nodes working out of 2n nodes. The second term is a conditional probability that at least a connected m-cube exists amo

Computer Networks and CommunicationsComputer Science
15
book|4 citations·1995
Modeling wormhole routing in a hypercube
Jong Kim, Chita R. Das
IEEE Computer Society Press eBooks

An analytical model for the performance evaluation of asynchronous hypercubes is presented. This analysis is aimed at modeling a deadlock-free wormhole routing scheme prevalent on second-generation hypercube systems. Probability of blocking and average message delay are discussed. The communication traffic to find the probability of blocking is the starting point. The traffic analysis can capture any message destination distribution. The average message delay that consists of two parts is found.

Computer Networks and CommunicationsComputer Science

Research Areas

Computer Networks and CommunicationsInformation SystemsHardware and ArchitectureSignal ProcessingElectrical and Electronic EngineeringArtificial Intelligence

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