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Rajib Schubert

Korea Advanced Institute of Science and Technology · 生化学・遺伝学・分子生物学

研究室紹介

Professor Rajib Schubert's research lab specializes in applying advanced biophysical techniques, particularly atomic force microscopy-based single-cell force spectroscopy, to study cell adhesion, mechanobiology, and molecular interactions at the single-cell level. The lab investigates how cell surface molecules—including teneurins, Flo11-type adhesins, and RGD-based polypeptides—mediate specific adhesion, guidance, and signaling in development, microbial communities, and disease. A central focus is understanding the mechanical and adhesive properties of cells in physiological and pathological contexts, such as vascular network formation and cancer therapy delivery. The lab also develops engineered biomolecules to tune cell-surface interactions for therapeutic and biotechnological applications.

single-cell force spectroscopycell adhesionmechano-biologyengineered polypeptidesbiomolecular interactions

Research Overview

Papers
23
Total Citations
685
Papers (5y)
11
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
11total
2019
2020
2021
2023
2026
Citations per year (5y)
103total
20192020202120232026

Selected Papers

15
1
Article|206 citations·2016
Nanomechanical mapping of first binding steps of a virus to animal cells
David Alsteens, Richard Newton, Rajib Schubert, David Martínez-Martín, Martin Delguste, Botond Roska, Daniel J. Müller
SJR Q1Nature Nanotechnology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Review|188 citations·2013
A practical guide to quantify cell adhesion using single-cell force spectroscopy
Jens Friedrichs, Kyle R. Legate, Rajib Schubert, Mitasha Bharadwaj, Carsten Werner, Daniel J. Müller, Martin Benoit
SJR Q1Methods
Atomic and Molecular Physics, and OpticsPhysics and Astronomy
3
Article|69 citations·2013
Deciphering Teneurin Domains That Facilitate Cellular Recognition, Cell–Cell Adhesion, and Neurite Outgrowth Using Atomic Force Microscopy-Based Single-Cell Force Spectroscopy
Jan Beckmann, Rajib Schubert, Ruth Chiquet‐Ehrismann, Daniel J. Müller
SJR Q1Nano LettersOA

Teneurins are evolutionarily conserved transmembrane receptors that function as axon guidance and target selection molecules in the developing nervous system. How teneurins recognize each other, whether they establish neuronal adhesion, and which teneurin specific interactions guide neurons remains to be determined. To reveal insight into these pertinent questions we combine atomic force microscopy-based single-cell force spectroscopy with genetic engineering and quantify the interactions teneur

Atomic and Molecular Physics, and OpticsPhysics and Astronomy
4
Article|45 citations·2017
Virus stamping for targeted single-cell infection in vitro and in vivo
Rajib Schubert, Stuart Trenholm, Kamill Bálint, Georg Kosche, Cameron S. Cowan, Manuel Mohr, Martin Munz, David Martínez-Martín, Gotthold Fläschner, Richard Newton, Jacek Król, Brigitte Gross Scherf
SJR Q1Nature Biotechnology
GeneticsBiochemistry, Genetics and Molecular Biology
5
Article|43 citations·2020
Kin discrimination in social yeast is mediated by cell surface receptors of the Flo11 adhesin family
Stefan Brückner, Rajib Schubert, Timo Kraushaar, Raimo Hartmann, Daniel Hoffmann, Eric Jelli, Knut Drescher, Daniel J. Müller, Lars‐Oliver Essen, Hans‐Ulrich Mösch
SJR Q1eLifeOA

Microorganisms have evolved specific cell surface molecules that enable discrimination between cells from the same and from a different kind. Here, we investigate the role of Flo11-type cell surface adhesins from social yeasts in kin discrimination. We measure the adhesion forces mediated by Flo11A-type domains using single-cell force spectroscopy, quantify Flo11A-based cell aggregation in populations and determine the Flo11A-dependent segregation of competing yeast strains in biofilms. We find

Molecular BiologyBiochemistry, Genetics and Molecular Biology
6
Article|35 citations·2014
Assay for characterizing the recovery of vertebrate cells for adhesion measurements by single‐cell force spectroscopy
Rajib Schubert, Nico Strohmeyer, Mitasha Bharadwaj, Subramanian P. Ramanathan, Michael Krieg, Jens Friedrichs, Clemens M. Franz, Daniel J. Müller
SJR Q1FEBS Letters

Single-cell force spectroscopy (SCFS) is becoming a widely used method to quantify the adhesion of a living cell to a substrate, another cell or tissue. The high sensitivity of SCFS permits determining the contributions of individual cell adhesion molecules (CAMs) to the adhesion force of an entire cell. However, to prepare adherent cells for SCFS, they must first be detached from tissue-culture flasks or plates. EDTA and trypsin are often applied for this purpose. Because cellular properties ca

Cell BiologyBiochemistry, Genetics and Molecular Biology
7
Article|29 citations·2021
The SHREAD gene therapy platform for paracrine delivery improves tumor localization and intratumoral effects of a clinical antibody
Sheena N. Smith, Rajib Schubert, Branko Simic, Dominik Brücher, Markus Schmid, Niels Kirk, Patrick C. Freitag, Viviana Gradinaru, Andreas Plückthun
SJR Q1Proceedings of the National Academy of SciencesOA

The goal of cancer-drug delivery is to achieve high levels of therapeutics within tumors with minimal systemic exposure that could cause toxicity. Producing biologics directly in situ where they diffuse and act locally is an attractive alternative to direct administration of recombinant therapeutics, as secretion by the tumor itself provides high local concentrations that act in a paracrine fashion continuously over an extended duration (paracrine delivery). We have engineered a SHielded, REtarg

GeneticsBiochemistry, Genetics and Molecular Biology
8
Article|21 citations·2016
The biomechanical properties of an epithelial tissue determine the location of its vasculature
Martin Kragl, Rajib Schubert, Haiko Karsjens, Silke Otter, Barbara Bartosinska, Kay Jeruschke, Jürgen Weiß, Chunguang Chen, David Alsteens, Oliver Kuß, Stephan Speier, Daniel Eberhard
SJR Q1Nature CommunicationsOA

An important question is how growing tissues establish a blood vessel network. Here we study vascular network formation in pancreatic islets, endocrine tissues derived from pancreatic epithelium. We find that depletion of integrin-linked kinase (ILK) in the pancreatic epithelial cells of mice results in glucose intolerance due to a loss of the intra-islet vasculature. In turn, blood vessels accumulate at the islet periphery. Neither alterations in endothelial cell proliferation, apoptosis, morph

SurgeryMedicine
9
Article|18 citations·2010
Strongly Binding Cell‐Adhesive Polypeptides of Programmable Valencies
Benjamin W. Lee, Rajib Schubert, Yuk Kee Cheung, Federico Zannier, Qian Wei, Daniele Sacchi, Samuel K. Sia
SJR Q1Angewandte Chemie International Edition

Longer and stronger: Engineered multivalent polypeptides were used to increase and tune the adhesion strength of cells to surfaces. Monodisperse polypeptides containing programmable valencies of a cell-adhesion sequence were synthesized (with up to 80 repeats of the RGD sequence; see schematic illustration). The multivalent cell-adhesion polypeptides provided strong resistance to cellular delamination under shear.

BiomaterialsMaterials Science
10
Article|13 citations·2019
Magnetically guided virus stamping for the targeted infection of single cells or groups of cells
Rajib Schubert, Sophie Herzog, Stuart Trenholm, Botond Roska, Daniel J. Müller
SJR Q1Nature ProtocolsOA
Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|13 citations·2023
Transcriptional Dysregulation and Impaired Neuronal Activity in FMR1 Knock-Out and Fragile X Patients’ iPSC-Derived Models
Gilles Maussion, Cecilia Rocha, Narges Abdian, Dimitri Yang, J Turk, Dulce Carrillo Valenzuela, Luisa Pimentel, Zhipeng You, Barbara Morquette, Michaël Nicouleau, Éric Deneault, Samuel G. Higgins
SJR Q1International Journal of Molecular SciencesOA

Fragile X syndrome (FXS) is caused by a repression of the FMR1 gene that codes the Fragile X mental retardation protein (FMRP), an RNA binding protein involved in processes that are crucial for proper brain development. To better understand the consequences of the absence of FMRP, we analyzed gene expression profiles and activities of cortical neural progenitor cells (NPCs) and neurons obtained from FXS patients’ induced pluripotent stem cells (IPSCs) and IPSC-derived cells from FMR1 knock-out e

GeneticsBiochemistry, Genetics and Molecular Biology
12
Article|4 citations·2023
CRISPR-clear imaging of melanin-rich B16-derived solid tumors
Rajib Schubert, Taegeun Bae, Branko Simic, Sheena N. Smith, Seong-Ho Park, Gabriela Nagy‐Davidescu, Viviana Gradinaru, Andreas Plückthun, Junho K. Hur
SJR Q1Communications BiologyOA

Tissue clearing combined with deep imaging has emerged as a powerful technology to expand classical histological techniques. Current techniques have been optimized for imaging sparsely pigmented organs such as the mammalian brain. In contrast, melanin-rich pigmented tissue, of great interest in the investigation of melanomas, remains challenging. To address this challenge, we have developed a CRISPR-based gene editing approach that is easily incorporated into existing tissue-clearing workflows s

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Preprint|1 citations·2023
Transcriptional dysregulation and impaired neuronal activity in FMR1 knock-out and Fragile X patients’ iPSC-derived models
Gilles Maussion, Cecilia Rocha, Narges Abdian, Dimitri Yang, J Turk, Dulce Carrillo Valenzuela, Luisa Pimentel, Zhipeng You, Barbara Morquette, Michaël Nicouleau, Éric Deneault, Samuel G. Higgins
bioRxiv (Cold Spring Harbor Laboratory)OA

Abstract The lack of fragile X mental retardation protein (FMRP) protein, due to a repression of the FMR1 gene, causes Fragile X syndrome (FXS), one of the most prevalent forms of syndromic autisms. The FMR1 gene codes for an RNA binding protein involved in the regulation of gene expression through RNA processing, control of local translation, and protein-protein interactions; processes that are crucial for proper brain development. Taking advantage of induced pluripotent stem cells (iPSCs) and

GeneticsBiochemistry, Genetics and Molecular Biology
14
Article|0 citations·2021
Magnetically Single-Cell Virus Stamping
Rajib Schubert
SJR Q4Methods in molecular biology
GeneticsBiochemistry, Genetics and Molecular Biology

Research Areas

GeneticsMolecular BiologyAtomic and Molecular Physics, and OpticsCell BiologyBiomaterialsSurgery

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