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Soomin Lee

Korea Advanced Institute of Science and Technology · 情報科学

研究室紹介

Professor Soomin Lee's research lab specializes in the intersection of machine learning, computational biology, and advanced imaging technologies, with a focus on solving complex problems in drug discovery, tumor biology, and 3D fabrication. The lab develops deep learning and graph-based models to predict molecular solubility and protein-ligand interactions, particularly for challenging targets like GPCRs. It also pioneers innovative spatial omics and fashion landmark detection techniques to decode biological and visual complexity. Additionally, the lab explores novel fabrication methods, such as 3D transformation of pen-drawn 2D patterns via capillary forces, blending materials science with AI-driven design.

deep learningmolecular modelingspatial omics3D fabricationcomputer vision

Research Overview

Papers
131
Total Citations
1,447
Papers (5y)
90
Primary Field
情報科学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
90total
2022
2023
2024
2025
2026
Citations per year (5y)
551total
20222023202420252026

Selected Papers

15
1
Article|81 citations·2022
Novel Solubility Prediction Models: Molecular Fingerprints and Physicochemical Features vs Graph Convolutional Neural Networks
Sumin Lee, Myeonghun Lee, Ki-Won Gyak, Sung Dug Kim, Mi‐Jeong Kim, Kyoungmin Min
SJR Q1ACS OmegaOA

Predicting both accurate and reliable solubility values has long been a crucial but challenging task. In this work, surrogated model-based methods were developed to accurately predict the solubility of two molecules (solute and solvent) through machine learning and deep learning. The current study employed two methods: (1) converting molecules into molecular fingerprints and adding optimal physicochemical properties as descriptors and (2) using graph convolutional network (GCN) models to convert

Computational Theory and MathematicsComputer Science
2
Article|43 citations·2022
Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction
Sumin Lee, Seeun Kim, Gyu Rie Lee, Sohee Kwon, Hyeonuk Woo, Chaok Seok, Hahnbeom Park
SJR Q1Computational and Structural Biotechnology JournalOA

While deep learning (DL) has brought a revolution in the protein structure prediction field, still an important question remains how the revolution can be transferred to advances in structure-based drug discovery. Because the lessons from the recent GPCR dock challenge were inconclusive primarily due to the size of the dataset, in this work we further elaborated on 70 diverse GPCR complexes bound to either small molecules or peptides to investigate the best-practice modeling and docking strategi

Computational Theory and MathematicsComputer Science
3
Review|39 citations·2024
Mapping cancer biology in space: applications and perspectives on spatial omics for oncology
Sumin Lee, Gyeongjun Kim, JinYoung Lee, Amos Chungwon Lee, Sunghoon Kwon
SJR Q1Molecular CancerOA

Technologies to decipher cellular biology, such as bulk sequencing technologies and single-cell sequencing technologies, have greatly assisted novel findings in tumor biology. Recent findings in tumor biology suggest that tumors construct architectures that influence the underlying cancerous mechanisms. Increasing research has reported novel techniques to map the tissue in a spatial context or targeted sampling-based characterization and has introduced such technologies to solve oncology regardi

Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|37 citations·2019
A Global-Local Embedding Module for Fashion Landmark Detection
Sumin Lee, Sungchan Oh, Chanho Jung, Changick Kim

Detecting fashion landmarks is a fundamental technique for visual clothing analysis. Due to the large variation and non-rigid deformation of clothes, localizing fashion landmarks suffers from large spatial variances across poses, scales, and styles. Therefore, understanding contextual knowledge of clothes is required for accurate landmark detection. To that end, in this paper, we propose a fashion landmark detection network with a global-local embedding module. The global-local embedding module

Computer Vision and Pattern RecognitionComputer Science
5
Article|36 citations·2021
Direct 2D-to-3D transformation of pen drawings
Seo Woo Song, Sumin Lee, Jun Kyu Choe, Na‐Hyang Kim, Jun‐Won Kang, Amos Chungwon Lee, Yeongjae Choi, Ahyoun Choi, Yunjin Jeong, Wooseok Lee, Ju‐Young Kim, Sunghoon Kwon
SJR Q1Science AdvancesOA

Pen drawing is a method that allows simple, inexpensive, and intuitive two-dimensional (2D) fabrication. To integrate such advantages of pen drawing in fabricating 3D objects, we developed a 3D fabrication technology that can directly transform pen-drawn 2D precursors into 3D geometries. 2D-to-3D transformation of pen drawings is facilitated by surface tension-driven capillary peeling and floating of dried ink film when the drawing is dipped into an aqueous monomer solution. Selective control of

Automotive EngineeringEngineering
6
Article|25 citations·2018
Catalytic upgrading pyrolysis of pine sawdust for bio-oil with metal oxides
Sumin Lee, Min-Gu Lee, Jinwon Park
SJR Q2Journal of Material Cycles and Waste Management
Biomedical EngineeringEngineering
7
Article|18 citations·2020
CNN Acceleration With Hardware-Efficient Dataflow for Super-Resolution
Sumin Lee, Sunghwan Joo, Hong Keun Ahn, Seong‐Ook Jung
SJR Q1IEEE AccessOA

The convolutional neural network (CNN)-based super-resolution (SR) has shown outstanding performance in the field of computer vision. The implementation of inference hardware for CNN-based SR has suffered from the intensive computation with severely unbalanced computation load among layers. Various light-weighted SR networks have been researched with little performance degradation. However, the hardware-efficient dataflow is also required to efficiently accelerate inference hardware within limit

Computer Vision and Pattern RecognitionComputer Science
8
Article|13 citations·2023
Modality Mixer for Multi-modal Action Recognition
Sumin Lee, Sangmin Woo, Yeonju Park, Muhammad Adi Nugroho, Changick Kim
2023 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)

In multi-modal action recognition, it is important to consider not only the complementary nature of different modalities but also global action content. In this paper, we propose a novel network, named Modality Mixer (M-Mixer) network, to leverage complementary information across modalities and temporal context of an action for multi-modal action recognition. We also introduce a simple yet effective recurrent unit, called Multi-modal Contextualization Unit (MCU), which is a core component of M-M

Computer Vision and Pattern RecognitionComputer Science
9
Article|11 citations·2016
The Guideline of Diagnosis and Treatment of Attention-Deficit Hyperactivity Disorder: Developed by ADHD Translational Research Center
Sumin Lee, Jae-Won Choi, Kyoung-Min Kim, Jun Won Kim, Soo-Yeon Kim, Tae-Woong Kang, Johanna Inhyang Kim, Young Sik Lee, Bongseog Kim, Doug Hyun Han, Jae Hoon Cheong, Soyoung Irene Lee
SJR Q2Journal of korean Academy of Child and Adolescent PsychiatryOA

Sumin Lee, Jae-Won Choi, Kyoung-Min Kim, Jun Won Kim, Sooyeon Kim, Taewoong Kang, Johanna Inhyang Kim, Young Sik Lee, Bongseog Kim, Doug Hyun Han, Jae Hoon Cheong, Soyoung Irene Lee, Gi Jung Hyun, and Bung-Nyun Kim. J Korean Acad Child Adolesc Psychiatry 2016;27:236-66. https://doi.org/10.5765/jkacap.2016.27.4.236

Psychiatry and Mental healthMedicine
10
Article|10 citations·2006
Microscopic analysis of ester hydrolysis reaction catalyzed by Candida rugosa lipase
Sumin Lee, Sangpill Hwang, Kangtaek Lee, Ik‐Sung Ahn
SJR Q1Colloids and Surfaces B Biointerfaces
Molecular BiologyBiochemistry, Genetics and Molecular Biology
11
Article|8 citations·2022
SIF-NPU: A 28nm 3.48 TOPS/W 0.25 TOPS/mm2 CNN Accelerator with Spatially Independent Fusion for Real-Time UHD Super-Resolution
Sumin Lee, Ki-Beom Lee, Sunghwan Joo, Hong Keun Ahn, Junghyup Lee, Dohyung Kim, Bumsub Ham, Seong‐Ook Jung
ESSCIRC 2022- IEEE 48th European Solid State Circuits Conference (ESSCIRC)

This paper proposes a convolutional neural network (CNN)-based super-resolution accelerator for up-scaling to ultra-HD (UHD) resolution in real-time in edge devices. A novel error-compensated bit quantization is adopted to reduce bit depth in the SR task. Spatially independent layer fusion is exploited to satisfy high throughput requirements at UHD resolution by increasing parallelism. Burst operation with write mask in the dual-port SRAM increases the process element utilization by allowing the

Computer Vision and Pattern RecognitionComputer Science
12
Article|8 citations·2024
Effects of Gas‐Diffusion Layers and Water Management on the Carbon Corrosion of a Catalyst Layer in Proton‐Exchange Membrane Fuel Cells
Sumin Lee, Changki Kim, Eunjik Lee, Yoon-Young Choi, Sung Yong Jung, Young-Jun Sohn, Hwanyeong Oh
SJR Q1International Journal of Energy ResearchOA

Carbon corrosion in a catalyst layer (CL) deteriorates the performance and durability of proton‐exchange membrane fuel cells (PEMFCs), which are closely related to water management within these cells. This study investigates the characteristics of water behavior of two gas diffusion layers (GDLs) and compares their influence on degrees of degradation in the CL. First, the properties of the GDLs, including their thickness, pore size distribution, gas permeability, electrical resistance, contact a

Electrical and Electronic EngineeringEngineering
13
Article|7 citations·2022
Precise Torque-output Estimation of a Reaction-force-sensing Series Elastic Actuator for Human-robot Interaction
Sanguk Choi, Sumin Lee, Kyoungchul Kong
IFAC-PapersOnLineOA

A series elastic actuator (SEA) is mainly used in human-robot interaction applications. Especially, a reaction-force-sensing SEA (RFSEA), where the spring is located between the ground and the actuator, has been developed as a practical implementation of the SEAs, as their form-factors are superior to the conventional SEAs. However, the RFSEA has limitations on its torque control performance. The output torque of an RFSEA is estimated as the spring torque, assuming the load is fixed. However, si

Biomedical EngineeringEngineering
14
Article|6 citations·2022
Learning to Discriminate Information for Online Action Detection: Analysis and Application
Sumin Lee, Hyunjun Eun, Jinyoung Moon, Seokeon Choi, Yoonhyung Kim, Chanho Jung, Changick Kim
SJR Q1IEEE Transactions on Pattern Analysis and Machine Intelligence

Online action detection, which aims to identify an ongoing action from a streaming video, is an important subject in real-world applications. For this task, previous methods use recurrent neural networks for modeling temporal relations in an input sequence. However, these methods overlook the fact that the input image sequence includes not only the action of interest but background and irrelevant actions. This would induce recurrent units to accumulate unnecessary information for encoding featur

Computer Vision and Pattern RecognitionComputer Science
15
Article|4 citations·2022
I-LIFT (image-based laser-induced forward transfer) platform for manipulating encoded microparticles
Sumin Lee, Wooseok Lee, Amos Chungwon Lee, Juhong Nam, JinYoung Lee, Hamin Kim, Yunjin Jeong, Huiran Yeom, Namphil Kim, Seo Woo Song, Sunghoon Kwon
SJR Q2BiomicrofluidicsOA

Encoded microparticles have great potential in small-volume multiplexed assays. It is important to link the micro-level assays to the macro-level by indexing and manipulating the microparticles to enhance their versatility. There are technologies to actively manipulate the encoded microparticles, but none is capable of directly manipulating the encoded microparticles with homogeneous physical properties. Here, we report the image-based laser-induced forward transfer system for active manipulatio

Biomedical EngineeringEngineering

Research Areas

Computer Vision and Pattern RecognitionBiomedical EngineeringMolecular BiologyElectrical and Electronic EngineeringArtificial IntelligenceComputational Theory and Mathematics

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