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Vanessa Lim

Seoul National University · 生化学・遺伝学・分子生物学

研究室紹介

Professor Vanessa Lim’s research lab specializes in the intersection of molecular stereochemistry and rhetorical theory, exploring the physical principles underlying protein folding and the role of water shells in molecular recognition. The lab also investigates the rhetorical structures in early modern literature, particularly Shakespeare’s use of commonplaces and classical rhetorical traditions in plays like *Hamlet*. Through stereochemical modeling and textual analysis, the lab bridges biophysical mechanisms with humanistic inquiry, emphasizing the selectivity of molecular interactions and the intellectual culture of the Renaissance. Current work examines how structural constraints in biomolecules and rhetorical devices in literature both shape complex systems through underlying rules of organization and recognition.

protein foldingmolecular recognitionrhetorical theorycommonplacesstereochemical modeling

Research Overview

Papers
32
Total Citations
1,345
Papers (5y)
11
Primary Field
生化学・遺伝学・分子生物学

Research Output Trend

Figures are computed from collected data and may differ slightly.

Publications per year (5y)
11total
2019
2020
2021
2023
2024
Citations per year (5y)
3total
20192020202120232024

Selected Papers

15
1
Article|466 citations·1974
Algorithms for prediction of α-helical and β-structural regions in globular proteins
Vanessa Lim
SJR Q1Journal of Molecular Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
Article|352 citations·1974
Structural principles of the globular organization of protein chains. A stereochemical theory of globular protein secondary structure
Vanessa Lim
SJR Q1Journal of Molecular Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
3
Article|174 citations·1974
Comparison of predicted and experimentally determined secondary structure of adenyl kinase
Georg E. Schulz, C. D. Barry, Joel Friedman, Peter Y. Chou, Gerald D. Fasman, Alexei V. Finkelstein, Vanessa Lim, Oleg B. Ptitsyn, Elvin A. Kabat, T T Wu, Michael Levitt, Barry Robson
SJR Q1Nature
Molecular BiologyBiochemistry, Genetics and Molecular Biology
4
Article|86 citations·1986
Stereochemical analysis of ribosomal transpeptidation conformation of nascent peptide
Vanessa Lim, Alexander S. Spirin
SJR Q1Journal of Molecular Biology
Molecular BiologyBiochemistry, Genetics and Molecular Biology
5
Article|64 citations·1978
Polypeptide chain folding through a highly helical intermediate as a general principle of globular protein structure formation
Vanessa Lim
SJR Q1FEBS LettersOA
Materials ChemistryMaterials Science
6
Article|25 citations·1978
Tertiary structure for palindromic regions of DNA
Vanessa Lim, A.L. Mazanov
SJR Q1FEBS Letters
Molecular BiologyBiochemistry, Genetics and Molecular Biology
7
Article|21 citations·1981
A novel structural model for collagen: Water—carbonyl helix
Vanessa Lim
SJR Q1FEBS LettersOA
BiomaterialsMaterials Science
8
Article|15 citations·1977
The folding pathway for globins
Vanessa Lim, А. В. Ефимов
SJR Q1FEBS Letters
Cell BiologyBiochemistry, Genetics and Molecular Biology
9
Article|14 citations·1978
[Stereochemical theory of the 3-dimensional structure of globular proteins. I. Highly helical intermediate structures].
Vanessa Lim, A L Mazanov, А. В. Ефимов
PubMed

The authors analyze the physical prerequisites on which the proposed stereochemical theory of the three-dimensional structure of globular proteins is based. The theory represents a stereochemical modelling of the mechanism of protein self-organization suggested earlier by one of the authors. According to this mechanism, a highly helical intermediate structure(s) is formed at first and then it passes into the native one. In the highly-helical intermediate structure the arrangement of the polypept

GeneticsBiochemistry, Genetics and Molecular Biology
10
Article|13 citations·1976
The folding of protein chains. Prediction of tobacco mosaic virus protein tertiary structure
Vanessa Lim, А. В. Ефимов
SJR Q1FEBS LettersOA
EcologyEnvironmental Science
11
Article|8 citations·1981
A novel structural model for silk fibroin: αLαRβ‐structure
Vanessa Lim, Sergey V. Steinberg
SJR Q1FEBS LettersOA
BiomaterialsMaterials Science
12
Article|7 citations·2006
Kinetic, energetic, and stereochemical factors determining the molecular recognition of proteins and nucleic acids
Vanessa Lim, V. G. Kljashtorny
SJR Q3Molecular Biology

It is shown within the framework of stereochemical modeling that disruption of water shells of proteins and nucleic acids is confronted by significant kinetic barriers caused by the breaking of hydrogen bonds. The structure of the water shells is dictated by the surface of proteins and nucleic acids, therefore the kinetic barriers due to disruption of the water shell are strongly distinct from each other on different parts of the shell. This, in turn, means that the probability of participation

Molecular BiologyBiochemistry, Genetics and Molecular Biology
13
Article|2 citations·2019
‘To be or not to be’: Hamlet’s Humanistic Quaestio
Vanessa Lim
SJR Q3The Review of English Studies

Abstract Hamlet’s ‘To be or not to be’ speech has long been the subject of intense scholarly attention. By situating the speech against the backdrop of classical and Renaissance rhetorical theory, this essay demonstrates that there is still much more to be said about it. The speech ostensibly examines a quaestio infinita or a thesis, and follows the rhetorical rule that the right way to do so is by the invocation of commonplaces. This reading of Hamlet’s speech is not only consistent with Shakes

MuseologyArts and Humanities
14
Article|1 citations·1986
Disallowed conformations of the tetrahedral intermediate
Vanessa Lim
SJR Q1Journal of Molecular Biology
Organic ChemistryChemistry
15
Article|0 citations·1989
[Stereochemical analysis of the selectivity of codon-anticodon interactions].
Vanessa Lim, Maria Garber
PubMed
Molecular BiologyBiochemistry, Genetics and Molecular Biology

Research Areas

Molecular BiologyLiterature and Literary TheoryBiomaterialsMuseologyHistoryMaterials Chemistry

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